diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2022-11-15 08:01:52 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2022-11-15 08:01:52 +0100 |
| commit | 679cf716192cdfd91dfd232578cbd4e30d7eac12 (patch) | |
| tree | 24dce01d75cd0dce7d2605ec600e0bcc49cf6ef5 /log | |
| parent | 2b16f6cc5aae9a57362db2add0e3263c65afc7e2 (diff) | |
Import saemix for easier profiling, update online docs
Diffstat (limited to 'log')
| -rw-r--r-- | log/test.log | 16 |
1 files changed, 8 insertions, 8 deletions
diff --git a/log/test.log b/log/test.log index f20a7f18..7005ac37 100644 --- a/log/test.log +++ b/log/test.log @@ -5,7 +5,7 @@ ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 1 12 | Dimethenamid data from 2018 [32.1s] +✔ | 1 12 | Dimethenamid data from 2018 [32.4s] ──────────────────────────────────────────────────────────────────────────────── Skip ('test_dmta.R:98'): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system @@ -14,9 +14,9 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] -✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s] +✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s] ✔ | 1 | Fitting the logistic model [0.2s] -✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [24.0s] +✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [24.2s] ✔ | 1 12 | Nonlinear mixed-effects models [0.3s] ──────────────────────────────────────────────────────────────────────────────── Skip ('test_mixed.R:74'): saemix results are reproducible for biphasic fits @@ -26,13 +26,13 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 10 | Special cases of mkinfit calls [0.5s] ✔ | 3 | mkinfit features [0.7s] ✔ | 8 | mkinmod model generation and printing [0.2s] -✔ | 3 | Model predictions with mkinpredict [0.4s] -✔ | 7 | Multistart method for saem.mmkin models [36.7s] +✔ | 3 | Model predictions with mkinpredict [0.3s] +✔ | 7 | Multistart method for saem.mmkin models [36.9s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.3s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s] +✔ | 9 | Nonlinear mixed-effects models with nlme [8.6s] ✔ | 16 | Plotting [9.8s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 1 36 | saemix parent models [66.4s] +✔ | 1 36 | saemix parent models [66.3s] ──────────────────────────────────────────────────────────────────────────────── Skip ('test_saemix_parent.R:143'): We can also use mkin solution methods for saem Reason: This still takes almost 2.5 minutes although we do not solve ODEs @@ -47,7 +47,7 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 211.1 s +Duration: 211.7 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) |