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authorJohannes Ranke <jranke@uni-bremen.de>2022-11-01 12:39:28 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-11-01 12:39:28 +0100
commita787e5266628f859fd70454c5419721efa494887 (patch)
tree06a88bd5f1f7cbd6d94db81399ffe77d92080991 /log
parent38eca0da138332bacb47ce0e3a8cc48f257bd0c8 (diff)
Fix plotting saem fits with covariates
Diffstat (limited to 'log')
-rw-r--r--log/check.log2
-rw-r--r--log/test.log18
2 files changed, 10 insertions, 10 deletions
diff --git a/log/check.log b/log/check.log
index 4092108e..44830443 100644
--- a/log/check.log
+++ b/log/check.log
@@ -59,7 +59,7 @@ The Date field is over a month old.
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
-* checking examples ... [15s/15s] OK
+* checking examples ... [16s/16s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... SKIPPED
* checking for unstated dependencies in vignettes ... OK
diff --git a/log/test.log b/log/test.log
index ab7402b9..611b66b6 100644
--- a/log/test.log
+++ b/log/test.log
@@ -5,7 +5,7 @@
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [31.2s]
+✔ | 1 12 | Dimethenamid data from 2018 [31.9s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
@@ -16,7 +16,7 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 8 | Batch fitting and diagnosing hierarchical kinetic models [14.2s]
+✔ | 8 | Batch fitting and diagnosing hierarchical kinetic models [14.5s]
✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits
@@ -26,28 +26,28 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 10 | Special cases of mkinfit calls [0.4s]
✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
-✔ | 3 | Model predictions with mkinpredict [0.3s]
-✔ | 7 | Multistart method for saem.mmkin models [35.3s]
+✔ | 3 | Model predictions with mkinpredict [0.4s]
+✔ | 7 | Multistart method for saem.mmkin models [36.2s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.4s]
✔ | 9 | Nonlinear mixed-effects models with nlme [8.8s]
-✔ | 16 | Plotting [9.9s]
+✔ | 16 | Plotting [10.0s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 37 | saemix parent models [70.3s]
+✔ | 1 37 | saemix parent models [71.4s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_saemix_parent.R:153:3): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
────────────────────────────────────────────────────────────────────────────────
-✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
+✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s]
✔ | 11 | Processing of residue series
✔ | 7 | Fitting the SFORB model [3.7s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
-✔ | 9 | Hypothesis tests [8.0s]
+✔ | 9 | Hypothesis tests [8.1s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 203.2 s
+Duration: 206.7 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)

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