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diff --git a/docs/IORE.solution.html b/docs/IORE.solution.html new file mode 100644 index 00000000..df94ef72 --- /dev/null +++ b/docs/IORE.solution.html @@ -0,0 +1,150 @@ +<!DOCTYPE html> +<html lang="en"> + <head> + <meta charset="utf-8"> +<title>IORE.solution. mkin 0.9.44.9000</title> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> +<meta name="author" content=""> + +<link href="css/bootstrap.css" rel="stylesheet"> +<link href="css/bootstrap-responsive.css" rel="stylesheet"> +<link href="css/highlight.css" rel="stylesheet"> +<link href="css/staticdocs.css" rel="stylesheet"> + +<!--[if lt IE 9]> + <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> +<![endif]--> + +<script type="text/x-mathjax-config"> + MathJax.Hub.Config({ + tex2jax: { + inlineMath: [ ['$','$'], ["\\(","\\)"] ], + processEscapes: true + } + }); +</script> +<script type="text/javascript" + src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> +</script> + </head> + + <body> + <div class="navbar"> + <div class="navbar-inner"> + <div class="container"> + <a class="brand" href="index.html">mkin 0.9.44.9000</a> + <div class="nav"> + <ul class="nav"> + <li><a href="index.html">Home</a></li> + <li><a href="reference.html">Reference</a></li> + </ul> + </div> + </div> + </div> +</div> + + + <div class="container"> + <header> + + </header> + + <h1> Indeterminate order rate equation kinetics </h1> + +<div class="row"> + <div class="span8"> + <h2>Usage</h2> + <pre><span class="functioncall"><a href='IORE.solution.html'>IORE.solution</a></span><span class="keyword">(</span><span class="symbol">t</span><span class="keyword">,</span> <span class="symbol">parent.0</span><span class="keyword">,</span> <span class="symbol">k__iore</span><span class="keyword">,</span> <span class="symbol">N</span><span class="keyword">)</span></pre> + + <h2>Arguments</h2> + <dl> + <dt>t</dt> + <dd> Time. </dd> + <dt>parent.0</dt> + <dd> Starting value for the response variable at time zero. </dd> + <dt>k__iore</dt> + <dd> Rate constant. Note that this depends on the concentration units used. </dd> + <dt>N</dt> + <dd> Exponent describing the nonlinearity of the rate equation </dd> + </dl> + + <div class="Description"> + <h2>Description</h2> + + <p>Function describing exponential decline from a defined starting value, with + a concentration dependent rate constant.</p> + + </div> + + <div class="Note"> + <h2>Note</h2> + + <p>The solution of the IORE kinetic model reduces to the + <code><a href='SFO.solution.html'>SFO.solution</a></code> if N = 1. + The parameters of the IORE model can be transformed to equivalent parameters + of the FOMC mode - see the NAFTA guidance for details.</p> + + </div> + + <div class="Value"> + <h2>Value</h2> + + <p><dl> + The value of the response variable at time <code>t</code>. +</dl></p> + + </div> + + <div class="References"> + <h2>References</h2> + + <p>NAFTA Technical Working Group on Pesticides (not dated) Guidance for + Evaluating and Calculating Degradation Kinetics in Environmental + Media</p> + + </div> + + <h2 id="examples">Examples</h2> + <pre class="examples"><div class='input'> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span><span class="keyword">(</span><span class="keyword">function</span><span class="keyword">(</span><span class="formalargs">x</span><span class="keyword">)</span> <span class="functioncall"><a href='IORE.solution.html'>IORE.solution</a></span><span class="keyword">(</span><span class="symbol">x</span><span class="keyword">,</span> <span class="number">100</span><span class="keyword">,</span> <span class="number">0.2</span><span class="keyword">,</span> <span class="number">1.3</span><span class="keyword">)</span><span class="keyword">,</span> <span class="number">0</span><span class="keyword">,</span> <span class="number">2</span><span class="keyword">,</span> + <span class="argument">ylim</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/c'>c</a></span><span class="keyword">(</span><span class="number">0</span><span class="keyword">,</span> <span class="number">100</span><span class="keyword">)</span><span class="keyword">)</span></div> +<p><img src='IORE.solution-2.png' alt='' width='540' height='400' /></p> +<div class='input'> <span class="symbol">fit.fomc</span> <span class="assignement"><-</span> <span class="functioncall"><a href='mkinfit.html'>mkinfit</a></span><span class="keyword">(</span><span class="string">"FOMC"</span><span class="keyword">,</span> <span class="symbol">FOCUS_2006_C</span><span class="keyword">,</span> <span class="argument">quiet</span> <span class="argument">=</span> <span class="number">TRUE</span><span class="keyword">)</span> + <span class="symbol">fit.iore</span> <span class="assignement"><-</span> <span class="functioncall"><a href='mkinfit.html'>mkinfit</a></span><span class="keyword">(</span><span class="string">"IORE"</span><span class="keyword">,</span> <span class="symbol">FOCUS_2006_C</span><span class="keyword">,</span> <span class="argument">quiet</span> <span class="argument">=</span> <span class="number">TRUE</span><span class="keyword">)</span> + <span class="symbol">fit.iore.deS</span> <span class="assignement"><-</span> <span class="functioncall"><a href='mkinfit.html'>mkinfit</a></span><span class="keyword">(</span><span class="string">"IORE"</span><span class="keyword">,</span> <span class="symbol">FOCUS_2006_C</span><span class="keyword">,</span> <span class="argument">solution_type</span> <span class="argument">=</span> <span class="string">"deSolve"</span><span class="keyword">,</span> <span class="argument">quiet</span> <span class="argument">=</span> <span class="number">TRUE</span><span class="keyword">)</span> + + <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/print'>print</a></span><span class="keyword">(</span><span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/data.frame'>data.frame</a></span><span class="keyword">(</span><span class="functioncall"><a href='http://www.rdocumentation.org/packages/stats/topics/coef'>coef</a></span><span class="keyword">(</span><span class="symbol">fit.fomc</span><span class="keyword">)</span><span class="keyword">,</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/stats/topics/coef'>coef</a></span><span class="keyword">(</span><span class="symbol">fit.iore</span><span class="keyword">)</span><span class="keyword">,</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/stats/topics/coef'>coef</a></span><span class="keyword">(</span><span class="symbol">fit.iore.deS</span><span class="keyword">)</span><span class="keyword">,</span> + <span class="argument">row.names</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/paste'>paste</a></span><span class="keyword">(</span><span class="string">"model par"</span><span class="keyword">,</span> <span class="number">1</span><span class="keyword">:</span><span class="number">3</span><span class="keyword">)</span><span class="keyword">)</span><span class="keyword">)</span></div> +<div class='output'> coef.fit.fomc. coef.fit.iore. coef.fit.iore.deS. +model par 1 85.87489063 85.874891 85.874890 +model par 2 0.05192238 -4.826631 -4.826631 +model par 3 0.65096665 1.949403 1.949403 +</div> +<div class='input'> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/print'>print</a></span><span class="keyword">(</span><span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/cbind'>rbind</a></span><span class="keyword">(</span><span class="argument">fomc</span> <span class="argument">=</span> <span class="functioncall"><a href='endpoints.html'>endpoints</a></span><span class="keyword">(</span><span class="symbol">fit.fomc</span><span class="keyword">)</span><span class="keyword">$</span><span class="symbol">distimes</span><span class="keyword">,</span> <span class="argument">iore</span> <span class="argument">=</span> <span class="functioncall"><a href='endpoints.html'>endpoints</a></span><span class="keyword">(</span><span class="symbol">fit.iore</span><span class="keyword">)</span><span class="keyword">$</span><span class="symbol">distimes</span><span class="keyword">,</span> + <span class="argument">iore.deS</span> <span class="argument">=</span> <span class="functioncall"><a href='endpoints.html'>endpoints</a></span><span class="keyword">(</span><span class="symbol">fit.iore</span><span class="keyword">)</span><span class="keyword">$</span><span class="symbol">distimes</span><span class="keyword">)</span><span class="keyword">)</span></div> +<div class='output'> DT50 DT90 DT50back +fomc 1.785233 15.1479 4.559973 +iore 1.785233 15.1479 4.559973 +iore.deS 1.785233 15.1479 4.559973 +</div></pre> + </div> + <div class="span4 sidebar"> + <!-- <ul> + <li>IORE.solution</li> + </ul> + <ul> + <li> manip </li> + </ul> --> + + + + + </div> +</div> + + <footer> + <p class="pull-right"><a href="#">Back to top</a></p> +<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. 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