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-rw-r--r--docs/dev/articles/prebuilt/2022_cyan_pathway.html76
1 files changed, 38 insertions, 38 deletions
diff --git a/docs/dev/articles/prebuilt/2022_cyan_pathway.html b/docs/dev/articles/prebuilt/2022_cyan_pathway.html
index 1095dd28..875f5ac9 100644
--- a/docs/dev/articles/prebuilt/2022_cyan_pathway.html
+++ b/docs/dev/articles/prebuilt/2022_cyan_pathway.html
@@ -136,7 +136,7 @@ residue data on cyantraniliprole</h1>
Ranke</h4>
<h4 data-toc-skip class="date">Last change on 6 January
-2023, last compiled on 17 Februar 2023</h4>
+2023, last compiled on 16 April 2023</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2022_cyan_pathway.rmd" class="external-link"><code>vignettes/prebuilt/2022_cyan_pathway.rmd</code></a></small>
<div class="hidden name"><code>2022_cyan_pathway.rmd</code></div>
@@ -2206,7 +2206,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:07:38 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - k_cyan * cyan
@@ -2334,7 +2334,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:08:17 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - k_cyan * cyan
@@ -2464,7 +2464,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:09:12 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan
@@ -2609,7 +2609,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:09:18 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan
@@ -2747,7 +2747,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:10:30 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -2893,7 +2893,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:16:28 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -3039,7 +3039,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:10:49 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -3204,7 +3204,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:17:00 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -3369,7 +3369,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:11:04 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - ifelse(time &lt;= tb, k1, k2) * cyan
@@ -3511,7 +3511,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:11:24 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - ifelse(time &lt;= tb, k1, k2) * cyan
@@ -3659,7 +3659,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:34:28 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan
@@ -3823,7 +3823,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:37:36 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan
@@ -3969,7 +3969,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:38:34 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -4160,7 +4160,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:45:32 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -4351,7 +4351,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:38:37 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -4547,7 +4547,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:46:02 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:20 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -4748,7 +4748,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 11:18:41 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:21 2023
Equations:
d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan
@@ -4891,7 +4891,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 11:16:32 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:21 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -5057,7 +5057,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 11:22:28 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:21 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -5223,7 +5223,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 11:17:37 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:21 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -5394,7 +5394,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 11:21:01 2023
-Date of summary: Fri Feb 17 22:24:33 2023
+Date of summary: Sun Apr 16 08:35:21 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -5561,9 +5561,9 @@ JSE76 26.89 89.33 NA NA NA
<div class="section level3">
<h3 id="session-info">Session info<a class="anchor" aria-label="anchor" href="#session-info"></a>
</h3>
-<pre><code>R version 4.2.2 Patched (2022-11-10 r83330)
+<pre><code>R version 4.2.3 (2023-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
-Running under: Debian GNU/Linux bookworm/sid
+Running under: Debian GNU/Linux 12 (bookworm)
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-serial/libblas.so.3
@@ -5582,23 +5582,23 @@ attached base packages:
[8] base
other attached packages:
-[1] saemix_3.2 npde_3.3 knitr_1.41 mkin_1.2.3
+[1] saemix_3.2 npde_3.3 knitr_1.42 mkin_1.2.3
loaded via a namespace (and not attached):
- [1] pillar_1.8.1 bslib_0.4.2 compiler_4.2.2 jquerylib_0.1.4
- [5] tools_4.2.2 mclust_6.0.0 digest_0.6.31 tibble_3.1.8
- [9] jsonlite_1.8.4 evaluate_0.19 memoise_2.0.1 lifecycle_1.0.3
-[13] nlme_3.1-162 gtable_0.3.1 lattice_0.20-45 pkgconfig_2.0.3
-[17] rlang_1.0.6 DBI_1.1.3 cli_3.5.0 yaml_2.3.6
-[21] pkgdown_2.0.7 xfun_0.35 fastmap_1.1.0 gridExtra_2.3
-[25] dplyr_1.0.10 stringr_1.5.0 generics_0.1.3 desc_1.4.2
-[29] fs_1.5.2 vctrs_0.5.1 sass_0.4.4 systemfonts_1.0.4
-[33] tidyselect_1.2.0 rprojroot_2.0.3 lmtest_0.9-40 grid_4.2.2
+ [1] pillar_1.9.0 bslib_0.4.2 compiler_4.2.3 jquerylib_0.1.4
+ [5] tools_4.2.3 mclust_6.0.0 digest_0.6.31 tibble_3.2.1
+ [9] jsonlite_1.8.4 evaluate_0.20 memoise_2.0.1 lifecycle_1.0.3
+[13] nlme_3.1-162 gtable_0.3.3 lattice_0.21-8 pkgconfig_2.0.3
+[17] rlang_1.1.0 DBI_1.1.3 cli_3.6.1 yaml_2.3.7
+[21] pkgdown_2.0.7 xfun_0.38 fastmap_1.1.1 gridExtra_2.3
+[25] dplyr_1.1.1 stringr_1.5.0 generics_0.1.3 desc_1.4.2
+[29] fs_1.6.1 vctrs_0.6.1 sass_0.4.5 systemfonts_1.0.4
+[33] tidyselect_1.2.0 rprojroot_2.0.3 lmtest_0.9-40 grid_4.2.3
[37] inline_0.3.19 glue_1.6.2 R6_2.5.1 textshaping_0.3.6
-[41] fansi_1.0.3 rmarkdown_2.19 purrr_1.0.0 ggplot2_3.4.0
-[45] magrittr_2.0.3 scales_1.2.1 htmltools_0.5.4 assertthat_0.2.1
-[49] colorspace_2.0-3 ragg_1.2.4 utf8_1.2.2 stringi_1.7.8
-[53] munsell_0.5.0 cachem_1.0.6 zoo_1.8-11 </code></pre>
+[41] fansi_1.0.4 rmarkdown_2.21 purrr_1.0.1 ggplot2_3.4.2
+[45] magrittr_2.0.3 scales_1.2.1 htmltools_0.5.5 colorspace_2.1-0
+[49] ragg_1.2.5 utf8_1.2.3 stringi_1.7.12 munsell_0.5.0
+[53] cachem_1.0.7 zoo_1.8-12 </code></pre>
</div>
<div class="section level3">
<h3 id="hardware-info">Hardware info<a class="anchor" aria-label="anchor" href="#hardware-info"></a>

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