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2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-73/+0
Also, use .rmd extension instead of .Rmd for vignettes.
2019-01-31Restore NAMESPACEJohannes Ranke1-5/+6
which was accidentally overwritten by pkgdown -> roxygen
2018-01-14Load mkin quietly in vignettesJohannes Ranke1-1/+1
Static documentation articles rebuilt by pkgdown::build_articles()
2017-11-16Use html_vignette for FOCUS_D vignette, fix addressv0.9.46.3Johannes Ranke1-3/+1
Static documentation articles rebuilt by pkgdown::build_articles()
2016-11-17Remove trailing whitespace, clean headersJohannes Ranke1-3/+3
Also ignore test.R in the top level directory, as it is not meant to be public
2016-11-17Use plot_sep in FOCUS D vignetteJohannes Ranke1-4/+5
2016-10-22Update way to specify encoding, improve FOCUS_L TOCJohannes Ranke1-6/+6
2016-06-28Attempts to reduce vignette sizeJohannes Ranke1-2/+3
Reducing the size of some figures and switching of retina figures in the preamble only gives a small decrease in vignette size, but may be enough to get the size of the doc directory below 5 MB to avoid the NOTE in the corresponding check (which I did not get locally, nor on winbuilder using r-devel.
2015-06-23Small documenation changesJohannes Ranke1-3/+2
2015-06-22Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵Johannes Ranke1-3/+3
r-forge
2015-06-22Version bump, correct benchmark in vignette/compiled_modelsJohannes Ranke1-7/+14
Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed.
2015-06-20Low-level generation of compiled modelsJohannes Ranke1-1/+1
As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled.
2015-06-05Add a simple vignette with an evaluation of FOCUS DJohannes Ranke1-0/+66

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