Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2023-05-19 | Prepare release of v1.2.4v1.2.4 | Johannes Ranke | 1 | -1607/+319 | |
- Update DESCRIPTION - Update Makefile to document how to use R-patched - Remove markup from two URLs to avoid CRAN NOTE - Switch two vignettes from html_document to html_vignette to save space in the docs directory, also avoiding a CRAN NOTE - Complete rebuild of pkgdown docs for release | |||||
2023-02-17 | Update benchmark results for 7950X | Johannes Ranke | 1 | -1/+1 | |
2023-02-13 | Merge branch 'main' into custom_lsoda_call | Johannes Ranke | 1 | -67/+245 | |
2023-01-09 | Prebuilt PDF vignettes, summary_listing | Johannes Ranke | 1 | -66/+244 | |
2022-11-16 | We get about 25% performance gain | Johannes Ranke | 1 | -1/+1 | |
with the custom lsoda call, avoiding repeated getNativeSymbolInfo calls. It's just that we should not be calling foreign functions from different packages, because the may change without notice. Using getNativeSymbolInfo for "call_lsoda" avoids the CRAN note, and a similar call could probably be used for "unlock_solver", avoiding the NOTE in checks for cran, but we should not do this in a CRAN package. | |||||
2022-07-12 | Rerun benchmarks on desktop computer | Johannes Ranke | 1 | -2/+10 | |
2022-03-02 | Make tests more platform independent, update docs | Johannes Ranke | 1 | -3/+3 | |
2022-02-09 | Adapt saemix interface to saemix 3.0 on CRAN | Johannes Ranke | 1 | -3/+3 | |
2021-09-16 | Adapt and improve the dimethenamid vignette | Johannes Ranke | 1 | -1/+1 | |
Adapt to the corrected data and unify control parameters for saemix and nlmixr with saem. Update docs | |||||
2021-09-16 | Merge branch 'master' into nlmixr | Johannes Ranke | 1 | -6/+3 | |
2021-07-23 | Rerun tests, use current vdiffr on travis | Johannes Ranke | 1 | -48/+40 | |
2021-02-15 | Improve README, introductory vignette and some other docsv1.0.3 | Johannes Ranke | 1 | -63/+45 | |
Also bump version to 1.0.3. | |||||
2020-11-27 | Improved way to have persistent DLLs for mkinmod | Johannes Ranke | 1 | -2/+2 | |
Depends on inline >= 0.16.2 (including the bug fixes from eddelbuettel/inline#18), which provides 'moveDLL' to store the DLL for a compiled function in a safe place in case the argument 'dll_dir' is specified in the call to 'mkinmod'. Huge thanks to Dirk @eddelbuettel for his review and support for the work on the inline package. | |||||
2020-11-24 | Support storing mkinmod compiled code as CFunc objects | Johannes Ranke | 1 | -4/+43 | |
With automatic reloading in mkinfit and mkinpredict in case the DLL is not loaded and the original DLL path has been cleaned up. Depends on jranke/inline@974bdea04fcedfafaab231e6f359c88270b56cb9 See inline#13 | |||||
2020-10-15 | Reintroduce saemix helper functions | Johannes Ranke | 1 | -8/+17 | |
2020-10-08 | Fix issues for release | Johannes Ranke | 1 | -6/+6 | |
2020-05-26 | Use all cores per default, confint tolerance | Johannes Ranke | 1 | -2/+2 | |
Also, use more intelligent starting values for the variance of the random effects for saemix. While this does not appear to speed up the convergence, it shows where this variance is greatly reduced by using mixed-effects models as opposed to the separate independent fits. | |||||
2020-05-12 | Improve documentation, now using a spell checker | Johannes Ranke | 1 | -4/+4 | |
2020-05-11 | Avoid merge() and data.frame() in cost function | Johannes Ranke | 1 | -51/+61 | |
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette. | |||||
2019-07-05 | Static documentation rebuilt by pkgdown | Johannes Ranke | 1 | -2/+2 | |
2019-07-04 | Update README and introductory vignette | Johannes Ranke | 1 | -17/+26 | |
2019-05-02 | Remove reference to archived kinfit package | Johannes Ranke | 1 | -34/+1413 | |
from vignettes/mkin.Rmd Static documentation rebuilt by pkgdown | |||||
2018-01-14 | Load mkin quietly in vignettes | Johannes Ranke | 1 | -3/+3 | |
Static documentation articles rebuilt by pkgdown::build_articles() | |||||
2017-11-16 | Use html_vignette for FOCUS_D vignette, fix addressv0.9.46.3 | Johannes Ranke | 1 | -12/+7 | |
Static documentation articles rebuilt by pkgdown::build_articles() | |||||
2017-07-21 | Fix another URL, vignette builder, rebuild | Johannes Ranke | 1 | -1/+2 | |
2017-07-21 | Recompile to get link in reference right | Johannes Ranke | 1 | -9/+13 | |
2016-11-18 | Change main vignette title | Johannes Ranke | 1 | -10/+11 | |
2016-11-17 | Rebuild | Johannes Ranke | 1 | -5/+5 | |
2016-11-17 | Add comments to R code in mkin vignette | Johannes Ranke | 1 | -13/+23 | |
2016-10-22 | Update way to specify encoding, improve FOCUS_L TOC | Johannes Ranke | 1 | -22/+42 | |
2016-09-28 | Add drat target and rebuild for drat | Johannes Ranke | 1 | -0/+355 | |
2016-09-10 | Static documentation rebuilt with current staticdocs | Johannes Ranke | 1 | -349/+0 | |
Using hadley/staticdocs commit #8c1069d from 8 days ago | |||||
2016-09-10 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 1 | -6/+8 | |
2016-06-28 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 1 | -8/+2 | |
2016-06-28 | Attempts to reduce vignette size | Johannes Ranke | 1 | -3/+9 | |
Reducing the size of some figures and switching of retina figures in the preamble only gives a small decrease in vignette size, but may be enough to get the size of the doc directory below 5 MB to avoid the NOTE in the corresponding check (which I did not get locally, nor on winbuilder using r-devel. | |||||
2016-06-28 | Avoid multicore fits in vignettes for passing CRAN checks | Johannes Ranke | 1 | -4/+3 | |
Also a small fix to the FOCUS Z vignette, and an update of the static documentation generated by staticdocs. | |||||
2016-06-27 | Complete mkin vignette, update FOCUS L vignette | Johannes Ranke | 1 | -13/+60 | |
The mkin vignette now describes how confidence intervals and the t-test are calculated. The FOCUS L vignette is updated with the new floating toc provided by the current rmarkdown package, and also uses current, improved mkin functionality. | |||||
2016-06-24 | Convert main vignette to Rmd/html, add_err(), fixes | Johannes Ranke | 1 | -0/+301 | |