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<title>mkinsub. mkin 0.9.44</title>
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  Johannes Ranke
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      <h1>
  Function to set up a kinetic submodel for one state variable
</h1>

<div class="row">
  <div class="span8">
    <h2>Usage</h2>
    <pre><div>mkinsub(submodel, to&nbsp;=&nbsp;NULL, sink&nbsp;=&nbsp;TRUE, full_name&nbsp;=&nbsp;NA)</div></pre>
    
    <h2>Arguments</h2>
    <dl>
      <dt>submodel</dt>
      <dd>
    Character vector of length one to specify the submodel type. See 
    <code><a href='mkinmod.html'>mkinmod</a></code> for the list of allowed submodel names.
  </dd>
      <dt>to</dt>
      <dd>
    Vector of the names of the state variable to which a transformation 
    shall be included in the model.
  </dd>
      <dt>sink</dt>
      <dd>
    Should a pathway to sink be included in the model in addition to the 
    pathways to other state variables?
  </dd>
      <dt>full_name</dt>
      <dd>
    An optional name to be used e.g. for plotting fits performed with the model.
    You can use non-ASCII characters here, but then your R code will not be
    portable, <em>i.e.</em> may produce unintended plot results on other
    operating systems or system configurations.
  </dd>
    </dl>
    
    <div class="Description">
      <h2>Description</h2>

      <p>This is a convenience function to set up the lists used as arguments for 
  <code><a href='mkinmod.html'>mkinmod</a></code>.</p>
  
    </div>

    <div class="Value">
      <h2>Value</h2>

      <p><dl>
  A list for use with <code><a href='mkinmod.html'>mkinmod</a></code>.
</dl></p>
  
    </div>
    
    <h2 id="examples">Examples</h2>
    <pre class="examples"><div class='input'># One parent compound, one metabolite, both single first order.
SFO_SFO &lt;- mkinmod(
  parent = list(type = &quot;SFO&quot;, to = &quot;m1&quot;),
  m1 = list(type = &quot;SFO&quot;))
</div>
<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong>
<div class='input'>
# The same model using mkinsub
SFO_SFO.2 &lt;- mkinmod(
  parent = mkinsub(&quot;SFO&quot;, &quot;m1&quot;),
  m1 = mkinsub(&quot;SFO&quot;))
</div>
<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong>
<div class='input'>
# Now supplying full names
SFO_SFO.2 &lt;- mkinmod(
  parent = mkinsub(&quot;SFO&quot;, &quot;m1&quot;, full_name = &quot;Test compound&quot;),
  m1 = mkinsub(&quot;SFO&quot;, full_name = &quot;Metabolite M1&quot;))
</div>
<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong></pre>
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    <h2>Author</h2>
    
  Johannes Ranke

    
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