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authorJohannes Ranke <jranke@uni-bremen.de>2023-11-12 21:40:01 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2023-11-12 21:40:01 +0100
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- <h1>Subset of EFSA crop washoff default values</h1>
- <div class="hidden name"><code>EFSA_washoff_2017.Rd</code></div>
+ </div>
+</nav><div class="container template-reference-topic">
+<div class="row">
+ <main id="main" class="col-md-9"><div class="page-header">
+ <img src="" class="logo" alt=""><h1>Subset of EFSA crop washoff default values</h1>
+ <small class="dont-index">Source: <a href="https://github.com/jranke/pfm/blob/HEAD/R/EFSA_washoff_2017.R" class="external-link"><code>R/EFSA_washoff_2017.R</code></a></small>
+ <div class="d-none name"><code>EFSA_washoff_2017.Rd</code></div>
</div>
- <div class="ref-description">
+ <div class="ref-description section level2">
<p>Subset of EFSA crop washoff default values</p>
</div>
-
- <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
-
+ <div class="section level2">
+ <h2 id="format">Format<a class="anchor" aria-label="anchor" href="#format"></a></h2>
<p>A matrix containing wash-off factors, currently only for some selected crops</p>
- <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
-
+ </div>
+ <div class="section level2">
+ <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2>
<p>European Food Safety Authority (2017) EFSA guidance document for
predicting environmental concentrations of active substances of plant
protection products and transformation products of these active substances
in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982
doi:10.2903/j.efsa.2017.4982</p>
+ </div>
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='kw'>if</span> (<span class='fl'>FALSE</span>) {
- <span class='co'># This is the code that was used to define the data</span>
- <span class='no'>bbch</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste0</a></span>(<span class='fl'>0</span>:<span class='fl'>9</span>, <span class='st'>"x"</span>)
- <span class='no'>crops</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(
- <span class='st'>"Beans (field + vegetable)"</span>,
- <span class='st'>"Peas"</span>,
- <span class='st'>"Summer oilseed rape"</span>, <span class='st'>"Winter oilseed rape"</span>,
- <span class='st'>"Tomatoes"</span>,
- <span class='st'>"Spring cereals"</span>, <span class='st'>"Winter cereals"</span>)
- <span class='no'>EFSA_washoff_2017</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/matrix.html'>matrix</a></span>(<span class='fl'>NA</span>, <span class='fu'><a href='https://rdrr.io/r/base/length.html'>length</a></span>(<span class='no'>crops</span>), <span class='fu'><a href='https://rdrr.io/r/base/length.html'>length</a></span>(<span class='no'>bbch</span>),
- <span class='kw'>dimnames</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span>(<span class='kw'>Crop</span> <span class='kw'>=</span> <span class='no'>crops</span>, <span class='kw'>BBCH</span> <span class='kw'>=</span> <span class='no'>bbch</span>))
- <span class='no'>EFSA_washoff_2017</span>[<span class='st'>"Beans (field + vegetable)"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>NA</span>, <span class='fl'>0.6</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.75</span>, <span class='fl'>2</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.8</span>, <span class='fl'>5</span>), <span class='fl'>0.35</span>)
- <span class='no'>EFSA_washoff_2017</span>[<span class='st'>"Peas"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>NA</span>, <span class='fl'>0.4</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.6</span>, <span class='fl'>2</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.65</span>, <span class='fl'>5</span>), <span class='fl'>0.35</span>)
- <span class='no'>EFSA_washoff_2017</span>[<span class='st'>"Summer oilseed rape"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>NA</span>, <span class='fl'>0.4</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.5</span>, <span class='fl'>2</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.6</span>, <span class='fl'>5</span>), <span class='fl'>0.5</span>)
- <span class='no'>EFSA_washoff_2017</span>[<span class='st'>"Winter oilseed rape"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>NA</span>, <span class='fl'>0.1</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.4</span>, <span class='fl'>2</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.55</span>, <span class='fl'>5</span>), <span class='fl'>0.3</span>)
- <span class='no'>EFSA_washoff_2017</span>[<span class='st'>"Tomatoes"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>NA</span>, <span class='fl'>0.55</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.75</span>, <span class='fl'>2</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.7</span>, <span class='fl'>5</span>), <span class='fl'>0.35</span>)
- <span class='no'>EFSA_washoff_2017</span>[<span class='st'>"Spring cereals"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>NA</span>, <span class='fl'>0.4</span>, <span class='fl'>0.5</span>, <span class='fl'>0.5</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.65</span>, <span class='fl'>3</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.65</span>, <span class='fl'>2</span>), <span class='fl'>0.55</span>)
- <span class='no'>EFSA_washoff_2017</span>[<span class='st'>"Winter cereals"</span>, ] <span class='kw'>&lt;-</span>
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>NA</span>, <span class='fl'>0.1</span>, <span class='fl'>0.4</span>, <span class='fl'>0.6</span>, <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.55</span>, <span class='fl'>3</span>), <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span>(<span class='fl'>0.6</span>, <span class='fl'>2</span>), <span class='fl'>0.4</span>)
- <span class='fu'><a href='https://rdrr.io/r/base/save.html'>save</a></span>(<span class='no'>EFSA_washoff_2017</span>,
- <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>"../data/EFSA_washoff_2017.RData"</span>)
-}
-<span class='no'>EFSA_washoff_2017</span></div><div class='output co'>#&gt; BBCH
-#&gt; Crop 0x 1x 2x 3x 4x 5x 6x 7x 8x 9x
-#&gt; Beans (field + vegetable) NA 0.60 0.75 0.75 0.80 0.80 0.80 0.80 0.80 0.35
-#&gt; Peas NA 0.40 0.60 0.60 0.65 0.65 0.65 0.65 0.65 0.35
-#&gt; Summer oilseed rape NA 0.40 0.50 0.50 0.60 0.60 0.60 0.60 0.60 0.50
-#&gt; Winter oilseed rape NA 0.10 0.40 0.40 0.55 0.55 0.55 0.55 0.55 0.30
-#&gt; Tomatoes NA 0.55 0.75 0.75 0.70 0.70 0.70 0.70 0.70 0.35
-#&gt; Spring cereals NA 0.40 0.50 0.50 0.65 0.65 0.65 0.65 0.65 0.55
-#&gt; Winter cereals NA 0.10 0.40 0.60 0.55 0.55 0.55 0.60 0.60 0.40</div></pre>
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- <nav id="toc" data-toggle="toc" class="sticky-top">
- <h2 data-toc-skip>Contents</h2>
- </nav>
- </div>
-</div>
+ <div class="section level2">
+ <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span></span></span>
+<span class="r-in"><span> <span class="co"># This is the code that was used to define the data</span></span></span>
+<span class="r-in"><span> <span class="va">bbch</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste0</a></span><span class="op">(</span><span class="fl">0</span><span class="op">:</span><span class="fl">9</span>, <span class="st">"x"</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="va">crops</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span></span></span>
+<span class="r-in"><span> <span class="st">"Beans (field + vegetable)"</span>,</span></span>
+<span class="r-in"><span> <span class="st">"Peas"</span>,</span></span>
+<span class="r-in"><span> <span class="st">"Summer oilseed rape"</span>, <span class="st">"Winter oilseed rape"</span>,</span></span>
+<span class="r-in"><span> <span class="st">"Tomatoes"</span>,</span></span>
+<span class="r-in"><span> <span class="st">"Spring cereals"</span>, <span class="st">"Winter cereals"</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="va">EFSA_washoff_2017</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/matrix.html" class="external-link">matrix</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="va">crops</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="va">bbch</span><span class="op">)</span>,</span></span>
+<span class="r-in"><span> dimnames <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>Crop <span class="op">=</span> <span class="va">crops</span>, BBCH <span class="op">=</span> <span class="va">bbch</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Beans (field + vegetable)"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.6</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.75</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.8</span>, <span class="fl">5</span><span class="op">)</span>, <span class="fl">0.35</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Peas"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.4</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.6</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.65</span>, <span class="fl">5</span><span class="op">)</span>, <span class="fl">0.35</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Summer oilseed rape"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.4</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.5</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.6</span>, <span class="fl">5</span><span class="op">)</span>, <span class="fl">0.5</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Winter oilseed rape"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.1</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.4</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.55</span>, <span class="fl">5</span><span class="op">)</span>, <span class="fl">0.3</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Tomatoes"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.55</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.75</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.7</span>, <span class="fl">5</span><span class="op">)</span>, <span class="fl">0.35</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Spring cereals"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.4</span>, <span class="fl">0.5</span>, <span class="fl">0.5</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.65</span>, <span class="fl">3</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.65</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fl">0.55</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Winter cereals"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.1</span>, <span class="fl">0.4</span>, <span class="fl">0.6</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.55</span>, <span class="fl">3</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.6</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fl">0.4</span><span class="op">)</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/save.html" class="external-link">save</a></span><span class="op">(</span><span class="va">EFSA_washoff_2017</span>,</span></span>
+<span class="r-in"><span> file <span class="op">=</span> <span class="st">"../data/EFSA_washoff_2017.RData"</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="op">}</span></span></span>
+<span class="r-in"><span><span class="va">EFSA_washoff_2017</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> BBCH</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Crop 0x 1x 2x 3x 4x 5x 6x 7x 8x 9x</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Beans (field + vegetable) NA 0.60 0.75 0.75 0.80 0.80 0.80 0.80 0.80 0.35</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Peas NA 0.40 0.60 0.60 0.65 0.65 0.65 0.65 0.65 0.35</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Summer oilseed rape NA 0.40 0.50 0.50 0.60 0.60 0.60 0.60 0.60 0.50</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Winter oilseed rape NA 0.10 0.40 0.40 0.55 0.55 0.55 0.55 0.55 0.30</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Tomatoes NA 0.55 0.75 0.75 0.70 0.70 0.70 0.70 0.70 0.35</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Spring cereals NA 0.40 0.50 0.50 0.65 0.65 0.65 0.65 0.65 0.55</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Winter cereals NA 0.10 0.40 0.60 0.55 0.55 0.55 0.60 0.60 0.40</span>
+</code></pre></div>
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