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authorRanke Johannes <johannes.ranke@agroscope.admin.ch>2024-01-31 13:16:17 +0100
committerRanke Johannes <johannes.ranke@agroscope.admin.ch>2024-01-31 13:27:50 +0100
commitaed160d7f0eaf5865e2bd9bf6c4b1c9d7b13d911 (patch)
tree7ca136834857c12449f50a1e086a589cc9b79e2e /docs/reference/FOCUS_GW_scenarios_2012.html
parent64f629efbe666bae56f48a309adf33d1eb09c358 (diff)
Reorganise data generation
- Use inst/data_generation for R code generating data as in some of my other packages - data/*.RData files were checked using https://github.com/jranke/dotfiles/blob/main/bin/rda_diff contents were not changed - Remove ChangeLog, the history is in the git logs - Update docs and some links contained therein - use \doi{} markup - Move logs to log directory
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-rw-r--r--docs/reference/FOCUS_GW_scenarios_2012.html248
1 files changed, 91 insertions, 157 deletions
diff --git a/docs/reference/FOCUS_GW_scenarios_2012.html b/docs/reference/FOCUS_GW_scenarios_2012.html
index 8b55d14..75c3ff4 100644
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<h1>A very small subset of the FOCUS Groundwater scenario definitions</h1>
@@ -114,104 +45,107 @@ soil definitions are from page 46ff. from FOCUS (2012)." />
soil definitions are from page 46ff. from FOCUS (2012).</p>
</div>
- <pre class="usage"><span class='no'>FOCUS_GW_scenarios_2012</span></pre>
-
-
- <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="va">FOCUS_GW_scenarios_2012</span></span></code></pre></div>
+ </div>
+ <div id="format">
+ <h2>Format</h2>
<p>An object of class <code>list</code> of length 2.</p>
- <h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2>
-
+ </div>
+ <div id="references">
+ <h2>References</h2>
<p>FOCUS (2012) Generic guidance for Tier 1 FOCUS ground water assessments. Version 2.1.
FOrum for the Co-ordination of pesticde fate models and their USe.
http://focus.jrc.ec.europa.eu/gw/docs/Generic_guidance_FOCV2_1.pdf</p>
+ </div>
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='no'>FOCUS_GW_scenarios_2012</span></div><div class='output co'>#&gt; $names
-#&gt; Cha Ham Jok Kre Oke
-#&gt; "Châteaudun" "Hamburg" "Jokioinen" "Kremsmünster" "Okehampton"
-#&gt; Pia Por Sev Thi
-#&gt; "Piacenza" "Porto" "Sevilla" "Thiva"
-#&gt;
-#&gt; $soils
-#&gt; location horizon number pH_H2O perc_clay perc_oc rel_deg
-#&gt; 1 Cha Ap 1 8.0 30.0 1.39 1.0
-#&gt; 2 Cha B1 2 8.1 31.0 0.93 0.5
-#&gt; 3 Cha B2 3 8.2 25.0 0.70 0.5
-#&gt; 4 Cha II C1 4 8.5 26.0 0.30 0.3
-#&gt; 5 Cha II C1 5 8.5 26.0 0.30 0.0
-#&gt; 6 Cha II C2 6 8.5 24.0 0.27 0.0
-#&gt; 7 Cha M 7 8.3 31.0 0.21 0.0
-#&gt; 8 Ham Ap 1 6.4 7.2 1.50 1.0
-#&gt; 9 Ham BvI 2 5.6 6.7 1.00 0.5
-#&gt; 10 Ham BvII 3 5.6 0.9 0.20 0.3
-#&gt; 11 Ham Bv/Cv 4 5.7 0.0 0.00 0.3
-#&gt; 12 Ham Cv 5 5.5 0.0 0.00 0.3
-#&gt; 13 Ham Cv 6 5.5 0.0 0.00 0.0
-#&gt; 14 Jok Ap 1 6.2 3.6 4.06 1.0
-#&gt; 15 Jok Bs 2 5.6 1.8 0.84 0.5
-#&gt; 16 Jok BC1 3 5.4 1.2 0.36 0.3
-#&gt; 17 Jok BC2 4 5.4 1.7 0.29 0.3
-#&gt; 18 Jok BC2 5 5.4 1.7 0.29 0.0
-#&gt; 19 Jok Cg 6 5.3 1.9 0.21 0.0
-#&gt; 20 Kre &lt;NA&gt; 1 7.7 14.0 3.60 1.0
-#&gt; 21 Kre &lt;NA&gt; 2 7.0 25.0 1.00 0.5
-#&gt; 22 Kre &lt;NA&gt; 3 7.1 27.0 0.50 0.5
-#&gt; 23 Kre &lt;NA&gt; 4 7.1 27.0 0.50 0.3
-#&gt; 24 Kre &lt;NA&gt; 5 7.1 27.0 0.50 0.0
-#&gt; 25 Oke A 1 5.8 18.0 2.20 1.0
-#&gt; 26 Oke Bw1 2 6.3 17.0 0.70 0.5
-#&gt; 27 Oke BC 3 6.5 14.0 0.40 0.3
-#&gt; 28 Oke C 4 6.6 9.0 0.10 0.3
-#&gt; 29 Oke C 5 6.6 9.0 0.10 0.0
-#&gt; 30 Pia Ap 1 7.0 15.0 1.26 1.0
-#&gt; 31 Pia Ap 2 7.0 15.0 1.26 0.5
-#&gt; 32 Pia Bw 3 6.3 7.0 0.47 0.5
-#&gt; 33 Pia Bw 4 6.3 7.0 0.47 0.3
-#&gt; 34 Pia 2C 5 6.4 0.0 0.00 0.3
-#&gt; 35 Pia 2C 6 6.4 0.0 0.00 0.0
-#&gt; 36 Por &lt;NA&gt; 1 4.9 10.0 1.42 1.0
-#&gt; 37 Por &lt;NA&gt; 2 4.8 8.0 0.78 0.5
-#&gt; 38 Por &lt;NA&gt; 3 4.8 8.0 0.78 0.3
-#&gt; 39 Por &lt;NA&gt; 4 4.8 8.0 0.78 0.0
-#&gt; 40 Sev &lt;NA&gt; 1 7.3 14.0 0.93 1.0
-#&gt; 41 Sev &lt;NA&gt; 2 7.3 13.0 0.93 1.0
-#&gt; 42 Sev &lt;NA&gt; 3 7.8 15.0 0.70 0.5
-#&gt; 43 Sev &lt;NA&gt; 4 8.1 16.0 0.58 0.3
-#&gt; 44 Sev &lt;NA&gt; 5 8.1 16.0 0.58 0.0
-#&gt; 45 Sev &lt;NA&gt; 6 8.2 22.0 0.49 0.0
-#&gt; 46 Thi Ap1 1 7.7 25.3 0.74 1.0
-#&gt; 47 Thi Ap2 2 7.7 25.3 0.74 0.5
-#&gt; 48 Thi Bw 3 7.8 29.6 0.57 0.5
-#&gt; 49 Thi Bw 4 7.8 31.9 0.31 0.3
-#&gt; 50 Thi Ck1 5 7.8 32.9 0.18 0.3
-#&gt; 51 Thi Ck1 6 7.8 32.9 0.18 0.0
-#&gt; </div></pre>
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">FOCUS_GW_scenarios_2012</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $names</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Cha Ham Jok Kre Oke </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> "Châteaudun" "Hamburg" "Jokioinen" "Kremsmünster" "Okehampton" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Pia Por Sev Thi </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> "Piacenza" "Porto" "Sevilla" "Thiva" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> $soils</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> location horizon number pH_H2O perc_clay perc_oc rel_deg</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 Cha Ap 1 8.0 30.0 1.39 1.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 Cha B1 2 8.1 31.0 0.93 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 Cha B2 3 8.2 25.0 0.70 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 Cha II C1 4 8.5 26.0 0.30 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 Cha II C1 5 8.5 26.0 0.30 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 Cha II C2 6 8.5 24.0 0.27 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 Cha M 7 8.3 31.0 0.21 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 Ham Ap 1 6.4 7.2 1.50 1.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 9 Ham BvI 2 5.6 6.7 1.00 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 10 Ham BvII 3 5.6 0.9 0.20 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 11 Ham Bv/Cv 4 5.7 0.0 0.00 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 12 Ham Cv 5 5.5 0.0 0.00 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 13 Ham Cv 6 5.5 0.0 0.00 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 14 Jok Ap 1 6.2 3.6 4.06 1.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 15 Jok Bs 2 5.6 1.8 0.84 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 16 Jok BC1 3 5.4 1.2 0.36 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 17 Jok BC2 4 5.4 1.7 0.29 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 18 Jok BC2 5 5.4 1.7 0.29 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 19 Jok Cg 6 5.3 1.9 0.21 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 20 Kre &lt;NA&gt; 1 7.7 14.0 3.60 1.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 21 Kre &lt;NA&gt; 2 7.0 25.0 1.00 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 22 Kre &lt;NA&gt; 3 7.1 27.0 0.50 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 23 Kre &lt;NA&gt; 4 7.1 27.0 0.50 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 24 Kre &lt;NA&gt; 5 7.1 27.0 0.50 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 25 Oke A 1 5.8 18.0 2.20 1.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 26 Oke Bw1 2 6.3 17.0 0.70 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 27 Oke BC 3 6.5 14.0 0.40 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 28 Oke C 4 6.6 9.0 0.10 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 29 Oke C 5 6.6 9.0 0.10 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 30 Pia Ap 1 7.0 15.0 1.26 1.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 31 Pia Ap 2 7.0 15.0 1.26 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 32 Pia Bw 3 6.3 7.0 0.47 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 33 Pia Bw 4 6.3 7.0 0.47 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 34 Pia 2C 5 6.4 0.0 0.00 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 35 Pia 2C 6 6.4 0.0 0.00 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 36 Por &lt;NA&gt; 1 4.9 10.0 1.42 1.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 37 Por &lt;NA&gt; 2 4.8 8.0 0.78 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 38 Por &lt;NA&gt; 3 4.8 8.0 0.78 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 39 Por &lt;NA&gt; 4 4.8 8.0 0.78 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 40 Sev &lt;NA&gt; 1 7.3 14.0 0.93 1.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 41 Sev &lt;NA&gt; 2 7.3 13.0 0.93 1.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 42 Sev &lt;NA&gt; 3 7.8 15.0 0.70 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 43 Sev &lt;NA&gt; 4 8.1 16.0 0.58 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 44 Sev &lt;NA&gt; 5 8.1 16.0 0.58 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 45 Sev &lt;NA&gt; 6 8.2 22.0 0.49 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 46 Thi Ap1 1 7.7 25.3 0.74 1.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 47 Thi Ap2 2 7.7 25.3 0.74 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 48 Thi Bw 3 7.8 29.6 0.57 0.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 49 Thi Bw 4 7.8 31.9 0.31 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 50 Thi Ck1 5 7.8 32.9 0.18 0.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 51 Thi Ck1 6 7.8 32.9 0.18 0.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+</code></pre></div>
+ </div>
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