aboutsummaryrefslogtreecommitdiff
path: root/docs/reference/EFSA_washoff_2017.html
blob: b424de9d0049a2c597fc07fe95f63772908452ba (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Subset of EFSA crop washoff default values"><title>Subset of EFSA crop washoff default values — EFSA_washoff_2017 • pfm</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Subset of EFSA crop washoff default values — EFSA_washoff_2017"><meta property="og:description" content="Subset of EFSA crop washoff default values"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--></head><body>
    <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
    

    <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
    
    <a class="navbar-brand me-2" href="../index.html">pfm</a>

    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.6.0</small>

    
    <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
      <span class="navbar-toggler-icon"></span>
    </button>

    <div id="navbar" class="collapse navbar-collapse ms-3">
      <ul class="navbar-nav me-auto"><li class="active nav-item">
  <a class="nav-link" href="../reference/index.html">Reference</a>
</li>
      </ul><form class="form-inline my-2 my-lg-0" role="search">
        <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>

      <ul class="navbar-nav"><li class="nav-item">
  <a class="external-link nav-link" href="https://github.com/jranke/pfm/" aria-label="github">
    <span class="fab fa fab fa-github fa-lg"></span>
     
  </a>
</li>
      </ul></div>

    
  </div>
</nav><div class="container template-reference-topic">
<div class="row">
  <main id="main" class="col-md-9"><div class="page-header">
      <img src="" class="logo" alt=""><h1>Subset of EFSA crop washoff default values</h1>
      <small class="dont-index">Source: <a href="https://github.com/jranke/pfm/blob/HEAD/R/EFSA_washoff_2017.R" class="external-link"><code>R/EFSA_washoff_2017.R</code></a></small>
      <div class="d-none name"><code>EFSA_washoff_2017.Rd</code></div>
    </div>

    <div class="ref-description section level2">
    <p>Subset of EFSA crop washoff default values</p>
    </div>


    <div class="section level2">
    <h2 id="format">Format<a class="anchor" aria-label="anchor" href="#format"></a></h2>
    <p>A matrix containing wash-off factors, currently only for some selected crops</p>
    </div>
    <div class="section level2">
    <h2 id="source">Source<a class="anchor" aria-label="anchor" href="#source"></a></h2>
    <p>European Food Safety Authority (2017) EFSA guidance document for
predicting environmental concentrations of active substances of plant
protection products and transformation products of these active substances
in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982
doi:10.2903/j.efsa.2017.4982</p>
    </div>

    <div class="section level2">
    <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span></span></span>
<span class="r-in"><span>  <span class="co"># This is the code that was used to define the data</span></span></span>
<span class="r-in"><span>  <span class="va">bbch</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste0</a></span><span class="op">(</span><span class="fl">0</span><span class="op">:</span><span class="fl">9</span>, <span class="st">"x"</span><span class="op">)</span></span></span>
<span class="r-in"><span>  <span class="va">crops</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span></span></span>
<span class="r-in"><span>    <span class="st">"Beans (field + vegetable)"</span>,</span></span>
<span class="r-in"><span>    <span class="st">"Peas"</span>,</span></span>
<span class="r-in"><span>    <span class="st">"Summer oilseed rape"</span>, <span class="st">"Winter oilseed rape"</span>,</span></span>
<span class="r-in"><span>    <span class="st">"Tomatoes"</span>,</span></span>
<span class="r-in"><span>    <span class="st">"Spring cereals"</span>, <span class="st">"Winter cereals"</span><span class="op">)</span></span></span>
<span class="r-in"><span>  <span class="va">EFSA_washoff_2017</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/matrix.html" class="external-link">matrix</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="va">crops</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="va">bbch</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>    dimnames <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>Crop <span class="op">=</span> <span class="va">crops</span>, BBCH <span class="op">=</span> <span class="va">bbch</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span>  <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Beans (field + vegetable)"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
<span class="r-in"><span>    <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.6</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.75</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.8</span>, <span class="fl">5</span><span class="op">)</span>, <span class="fl">0.35</span><span class="op">)</span></span></span>
<span class="r-in"><span>  <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Peas"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
<span class="r-in"><span>    <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.4</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.6</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.65</span>, <span class="fl">5</span><span class="op">)</span>, <span class="fl">0.35</span><span class="op">)</span></span></span>
<span class="r-in"><span>  <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Summer oilseed rape"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
<span class="r-in"><span>    <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.4</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.5</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.6</span>, <span class="fl">5</span><span class="op">)</span>, <span class="fl">0.5</span><span class="op">)</span></span></span>
<span class="r-in"><span>  <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Winter oilseed rape"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
<span class="r-in"><span>    <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.1</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.4</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.55</span>, <span class="fl">5</span><span class="op">)</span>, <span class="fl">0.3</span><span class="op">)</span></span></span>
<span class="r-in"><span>  <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Tomatoes"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
<span class="r-in"><span>    <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.55</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.75</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.7</span>, <span class="fl">5</span><span class="op">)</span>, <span class="fl">0.35</span><span class="op">)</span></span></span>
<span class="r-in"><span>  <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Spring cereals"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
<span class="r-in"><span>    <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.4</span>, <span class="fl">0.5</span>, <span class="fl">0.5</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.65</span>, <span class="fl">3</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.65</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fl">0.55</span><span class="op">)</span></span></span>
<span class="r-in"><span>  <span class="va">EFSA_washoff_2017</span><span class="op">[</span><span class="st">"Winter cereals"</span>, <span class="op">]</span> <span class="op">&lt;-</span></span></span>
<span class="r-in"><span>    <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">0.1</span>, <span class="fl">0.4</span>, <span class="fl">0.6</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.55</span>, <span class="fl">3</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0.6</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fl">0.4</span><span class="op">)</span></span></span>
<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/r/base/save.html" class="external-link">save</a></span><span class="op">(</span><span class="va">EFSA_washoff_2017</span>,</span></span>
<span class="r-in"><span>    file <span class="op">=</span> <span class="st">"../data/EFSA_washoff_2017.RData"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="op">}</span></span></span>
<span class="r-in"><span><span class="va">EFSA_washoff_2017</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span>                            BBCH</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Crop                        0x   1x   2x   3x   4x   5x   6x   7x   8x   9x</span>
<span class="r-out co"><span class="r-pr">#&gt;</span>   Beans (field + vegetable) NA 0.60 0.75 0.75 0.80 0.80 0.80 0.80 0.80 0.35</span>
<span class="r-out co"><span class="r-pr">#&gt;</span>   Peas                      NA 0.40 0.60 0.60 0.65 0.65 0.65 0.65 0.65 0.35</span>
<span class="r-out co"><span class="r-pr">#&gt;</span>   Summer oilseed rape       NA 0.40 0.50 0.50 0.60 0.60 0.60 0.60 0.60 0.50</span>
<span class="r-out co"><span class="r-pr">#&gt;</span>   Winter oilseed rape       NA 0.10 0.40 0.40 0.55 0.55 0.55 0.55 0.55 0.30</span>
<span class="r-out co"><span class="r-pr">#&gt;</span>   Tomatoes                  NA 0.55 0.75 0.75 0.70 0.70 0.70 0.70 0.70 0.35</span>
<span class="r-out co"><span class="r-pr">#&gt;</span>   Spring cereals            NA 0.40 0.50 0.50 0.65 0.65 0.65 0.65 0.65 0.55</span>
<span class="r-out co"><span class="r-pr">#&gt;</span>   Winter cereals            NA 0.10 0.40 0.60 0.55 0.55 0.55 0.60 0.60 0.40</span>
</code></pre></div>
    </div>
  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
    </nav></aside></div>


    <footer><div class="pkgdown-footer-left">
  <p></p><p>Developed by Johannes Ranke.</p>
</div>

<div class="pkgdown-footer-right">
  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
</div>

    </footer></div>

  

  

  </body></html>

Contact - Imprint