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author | Johannes Ranke <jranke@uni-bremen.de> | 2017-01-25 18:39:48 +0100 |
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committer | Johannes Ranke <jranke@uni-bremen.de> | 2017-01-25 19:40:10 +0100 |
commit | 4f4cd07a9ef72c53bbfa53eda835f19dc9f9ad72 (patch) | |
tree | d0b43004be02826419563c204d181cef9d3ae76a |
Initial commit
-rw-r--r-- | .Rbuildignore | 5 | ||||
-rw-r--r-- | .gitignore | 3 | ||||
-rw-r--r-- | ChangeLog | 5 | ||||
-rw-r--r-- | DESCRIPTION | 16 | ||||
-rw-r--r-- | GNUmakefile | 54 | ||||
-rw-r--r-- | NAMESPACE | 4 | ||||
-rw-r--r-- | R/install_PELMO.R | 36 | ||||
-rw-r--r-- | README.md | 15 | ||||
-rw-r--r-- | docs/authors.html | 97 | ||||
-rw-r--r-- | docs/index.html | 86 | ||||
-rw-r--r-- | docs/jquery.sticky-kit.min.js | 9 | ||||
-rw-r--r-- | docs/link.svg | 12 | ||||
-rw-r--r-- | docs/pkgdown.css | 113 | ||||
-rw-r--r-- | docs/pkgdown.js | 8 | ||||
-rw-r--r-- | docs/reference/index.html | 107 | ||||
-rw-r--r-- | docs/reference/install_PELMO.html | 108 | ||||
-rw-r--r-- | man/install_PELMO.Rd | 14 |
17 files changed, 692 insertions, 0 deletions
diff --git a/.Rbuildignore b/.Rbuildignore new file mode 100644 index 0000000..29a18d6 --- /dev/null +++ b/.Rbuildignore @@ -0,0 +1,5 @@ +^PELMO_installeR_.*.tar.gz +^GNUmakefile$ +^build.log$ +^test.log$ +^docs$ diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..eee8d8d --- /dev/null +++ b/.gitignore @@ -0,0 +1,3 @@ +*\.log +PELMO.installeR*\.tar.gz +PELMO.installeR\.Rcheck diff --git a/ChangeLog b/ChangeLog new file mode 100644 index 0000000..bd68b6b --- /dev/null +++ b/ChangeLog @@ -0,0 +1,5 @@ +commit 147cba00160380874987a00b417eac5bea562010 +Author: Johannes Ranke <jranke@uni-bremen.de> +Date: 2017-01-25 18:39:48 +0100 + + Initial commit diff --git a/DESCRIPTION b/DESCRIPTION new file mode 100644 index 0000000..1089b66 --- /dev/null +++ b/DESCRIPTION @@ -0,0 +1,16 @@ +Package: PELMO.installeR +Type: Package +Title: Install FOCUS PELMO into an R library location +Version: 0.1-1 +Date: 2017-01-25 +Authors@R: person("Johannes Ranke", email = "jranke@uni-bremen.de", + role = c("aut", "cre", "cph")) +Description: The only function in this package downloads 'FOCUS PELMO' from the + official website and installs it into the installation directory of this package. +SystemRequirements: wine +OS_type: unix +Imports: clipr +License: GPL +LazyLoad: yes +LazyData: yes +RoxygenNote: 5.0.1.9000 diff --git a/GNUmakefile b/GNUmakefile new file mode 100644 index 0000000..36cb038 --- /dev/null +++ b/GNUmakefile @@ -0,0 +1,54 @@ +PKGNAME := $(shell sed -n "s/Package: *\([^ ]*\)/\1/p" DESCRIPTION) +PKGVERS := $(shell sed -n "s/Version: *\([^ ]*\)/\1/p" DESCRIPTION) +TGZ := $(PKGNAME)_$(PKGVERS).tar.gz +R_HOME ?= $(shell R RHOME) +DATE := $(shell date +%Y-%m-%d) + +.PHONY: check + +pkgfiles = DESCRIPTION \ + .Rbuildignore \ + docs/* \ + docs/reference/* \ + R/* + +roxygen: + @echo "Roxygenizing package..." + "$(R_HOME)/bin/Rscript" -e 'library(devtools); document()' + @echo "DONE." + +pd: roxygen + @echo "Building static documentation..." + "$(R_HOME)/bin/Rscript" -e 'pkgdown::build_site()' + @echo "DONE." + +$(TGZ): $(pkgfiles) + sed -i -e "s/Date:.*/Date: $(DATE)/" DESCRIPTION + @echo "Roxygenizing package..." + "$(R_HOME)/bin/Rscript" -e 'library(devtools); document()' + @echo "Building package..." + git log --no-merges -M --date=iso > ChangeLog + "$(R_HOME)/bin/R" CMD build . > build.log 2>&1 + @echo "DONE." + +build: $(TGZ) + +check: build + @echo "Running CRAN check..." + "$(R_HOME)/bin/R" CMD check --as-cran $(TGZ) + @echo "DONE." + +install: build + @echo "Installing package..." + "$(R_HOME)/bin/R" CMD INSTALL --no-multiarch $(TGZ) + @echo "DONE." + +drat: build + "$(R_HOME)/bin/Rscript" -e "drat::insertPackage('$(TGZ)', commit = TRUE)" + +winbuilder: build + date + @echo "Uploading to R-release on win-builder" + curl -T $(TGZ) ftp://anonymous@win-builder.r-project.org/R-release/ + @echo "Uploading to R-devel on win-builder" + curl -T $(TGZ) ftp://anonymous@win-builder.r-project.org/R-devel/ diff --git a/NAMESPACE b/NAMESPACE new file mode 100644 index 0000000..46b7303 --- /dev/null +++ b/NAMESPACE @@ -0,0 +1,4 @@ +# Generated by roxygen2: do not edit by hand + +export(install_PELMO) +importFrom(clipr,write_clip) diff --git a/R/install_PELMO.R b/R/install_PELMO.R new file mode 100644 index 0000000..02b1064 --- /dev/null +++ b/R/install_PELMO.R @@ -0,0 +1,36 @@ +#' Download FOCUS PELMO from the official site and unzip into the package installation directory +#' +#' @importFrom clipr write_clip +#' @param version The FOCUS PELMO version to install +#' @export +install_PELMO <- function(version = "5.5.3", local_zip = NULL) { + pkg_dir <- system.file(package = "PELMO.installeR") + setup_dir <- file.path(pkg_dir, paste0("PELMO_", gsub("\\.", "", version), "_setup")) + if (!dir.exists(setup_dir)) dir.create(setup_dir) + + if (is.null(local_zip)) { + PELMO_file <- paste0("FOCUS_PELMO_", gsub("\\.", "_", version), ".zip") + PELMO_url <- paste0("http://esdac.jrc.ec.europa.eu/public_path/projects_data/focus/gw/software/", + PELMO_file) + PELMO_zip <- tempfile(fileext=".zip") + download.file(PELMO_url, PELMO_zip) + } else { + if (file.exists(local_zip)) { + PELMO_zip <- local_zip + } else { + stop(local_zip, " does not exist") + } + } + + unzip(PELMO_zip, exdir = setup_dir, junkpaths = TRUE) + oldwd <- setwd(setup_dir) + message("The FOCUS PELMO installer will now start.") + message("Please select the following directory in the installation process:") + PELMO_dest_dir <- paste0("Z:", gsub("/", "\\\\", pkg_dir), + "\\FOCUSPELMO.", gsub("\\.", "", version)) + message(PELMO_dest_dir) + message("This is now being pasted to the system clipboard") + write_clip(PELMO_dest_dir) + system("wine setup.exe") + setwd(oldwd) +} diff --git a/README.md b/README.md new file mode 100644 index 0000000..eee6b0c --- /dev/null +++ b/README.md @@ -0,0 +1,15 @@ +# PELMO.installeR + +The R package **PELMO.installeR** provides a way to install +[FOCUS PELMO](http://esdac.jrc.ec.europa.eu/projects/pelmo) +in a standardised way on unix system for use with +[wine](https://www.winehq.org). + +## Note + +If you (re)install this package, you will have to +[(re)install PELMO](http://jranke.github.io/PELMO.installeR/reference/install_PELMO.html) afterwards. + +## Use + +Please refer to the [reference](http://jranke.github.io/PELMO.installeR/reference/index.html). diff --git a/docs/authors.html b/docs/authors.html new file mode 100644 index 0000000..e8abd36 --- /dev/null +++ b/docs/authors.html @@ -0,0 +1,97 @@ +<!-- Generated by pkgdown: do not edit by hand --> +<!DOCTYPE html> +<html> + <head> + <meta charset="utf-8"> +<meta http-equiv="X-UA-Compatible" content="IE=edge"> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> + +<title>Authors • PELMO.installeR</title> + +<!-- jquery --> +<script src="https://code.jquery.com/jquery-3.1.0.min.js" 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</div><!--/.nav-collapse --> + </div><!--/.container --> +</div><!--/.navbar --> + + + </header> + + <div class="row"> + <div class="contents col-md-12"> + <div class="page-header"> + <h1>Authors</h1> + </div> + + <ul class="list-unstyled"> + <li> + <p><strong>Johannes Ranke</strong>. Author, maintainer, copyright holder. + </p> + </li> + </ul> + + </div> + +</div> + + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> +</div> + + </footer> + </div> + + </body> +</html> diff --git a/docs/index.html b/docs/index.html new file mode 100644 index 0000000..6aaaed4 --- /dev/null +++ b/docs/index.html @@ -0,0 +1,86 @@ +<!DOCTYPE html> +<!-- Generated by pkgdown: do not edit by hand --><html> +<head> +<meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> +<meta charset="utf-8"> +<meta http-equiv="X-UA-Compatible" content="IE=edge"> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> +<title>Install FOCUS PELMO into an R library location • PELMO.installeR</title> +<!-- jquery --><script src="https://code.jquery.com/jquery-3.1.0.min.js" 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</div> +<!--/.container --> +</div> +<!--/.navbar --> + + + </header><div class="row"> + <div class="contents col-md-9"> + <div id="pelmo-installer" class="section level1"> +<div class="page-header"><h1 class="hasAnchor"> +<a href="#pelmo-installer" class="anchor"> </a>PELMO.installeR</h1></div> +<p>The R package <strong>PELMO.installeR</strong> provides a way to install <a href="http://esdac.jrc.ec.europa.eu/projects/pelmo">FOCUS PELMO</a> in a standardised way on unix system for use with <a href="https://www.winehq.org">wine</a>.</p> +<div id="note" class="section level2"> +<h2 class="hasAnchor"> +<a href="#note" class="anchor"> </a>Note</h2> +<p>If you (re)install this package, you will have to <a href="http://jranke.github.io/PELMO.installeR/reference/install_PELMO.html">(re)install PELMO</a> afterwards.</p> +</div> +<div id="use" class="section level2"> +<h2 class="hasAnchor"> +<a href="#use" class="anchor"> </a>Use</h2> +<p>Please refer to the <a href="http://jranke.github.io/PELMO.installeR/reference/index.html">reference</a>.</p> +</div> +</div> + </div> + + <div class="col-md-3" id="sidebar"> + <h2>License</h2> +<p>GPL</p> +<h2>Developers</h2> +<ul class="list-unstyled"> +<li>Johannes Ranke <br><small class="roles"> Author, maintainer, copyright holder </small> </li> +</ul> +</div> +</div> + + + <footer><div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> +</div> + + </footer> +</div> + + </body> +</html> diff --git a/docs/jquery.sticky-kit.min.js b/docs/jquery.sticky-kit.min.js new file mode 100644 index 0000000..e2a3c6d --- /dev/null +++ b/docs/jquery.sticky-kit.min.js @@ -0,0 +1,9 @@ +/* + Sticky-kit v1.1.2 | WTFPL | Leaf Corcoran 2015 | http://leafo.net +*/ +(function(){var b,f;b=this.jQuery||window.jQuery;f=b(window);b.fn.stick_in_parent=function(d){var 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template-reference-index"> + <header> + <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <div class="container"> + <div class="navbar-header"> + <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar"> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + </button> + <a class="navbar-brand" href="../index.html">PELMO.installeR</a> + </div> + <div id="navbar" class="navbar-collapse collapse"> + <ul class="nav navbar-nav"> + <li> + <a href="../reference/index.html">Reference</a> +</li> + </ul> + + <ul class="nav navbar-nav navbar-right"> + + </ul> + </div><!--/.nav-collapse --> + </div><!--/.container --> +</div><!--/.navbar --> + + + </header> + + <div class="row"> + <div class="col-md-9"> + <div class="page-header"> + <h1>Function reference</h1> + <h4>version 0.1-1</h4> + </div> + + <div class="contents"> + <h2 id="section-all-functions" class="hasAnchor"><a href="#section-all-functions" class="anchor"></a>All functions</h2> + <p class="section-desc"></p> + + + <p><a href="install_PELMO.html">Download FOCUS PELMO from the official site and unzip into the package installation directory</a></p> + <ul> + <li><code><a href="install_PELMO.html">install_PELMO</a></code></li> + </ul> + + </div> + </div> + + <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> + <h2>Contents</h2> + <ul class="nav nav-pills nav-stacked"> + <li><a href="#section-all-functions">All functions</a></li> + </ul> + </div> +</div> + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> +</div> + + </footer> + </div> + + </body> +</html> diff --git a/docs/reference/install_PELMO.html b/docs/reference/install_PELMO.html new file mode 100644 index 0000000..621a2d4 --- /dev/null +++ b/docs/reference/install_PELMO.html @@ -0,0 +1,108 @@ +<!-- 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class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar"> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + </button> + <a class="navbar-brand" href="../index.html">PELMO.installeR</a> + </div> + <div id="navbar" class="navbar-collapse collapse"> + <ul class="nav navbar-nav"> + <li> + <a href="../reference/index.html">Reference</a> +</li> + </ul> + + <ul class="nav navbar-nav navbar-right"> + + </ul> + </div><!--/.nav-collapse --> + </div><!--/.container --> +</div><!--/.navbar --> + + + </header> + + <div class="row"> + <div class="col-md-9 contents"> + <div class="page-header"> + <h1>Download FOCUS PELMO from the official site and unzip into the package installation directory</h1> + </div> + + + <p>Download FOCUS PELMO from the official site and unzip into the package installation directory</p> + + + <pre><span class='fu'>install_PELMO</span>(<span class='kw'>version</span> <span class='kw'>=</span> <span class='st'>"5.5.3"</span>, <span class='kw'>local_zip</span> <span class='kw'>=</span> <span class='kw'>NULL</span>)</pre> + + <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2> + <dl class="dl-horizontal"> + <dt>version</dt> + <dd>The FOCUS PELMO version to install</dd> + </dl> + + + </div> + <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> + <h2>Contents</h2> + <ul class="nav nav-pills nav-stacked"> + <li><a href="#arguments">Arguments</a></li> + </ul> + + </div> +</div> + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> +</div> + + </footer> + </div> + + </body> +</html> diff --git a/man/install_PELMO.Rd b/man/install_PELMO.Rd new file mode 100644 index 0000000..1bca1bb --- /dev/null +++ b/man/install_PELMO.Rd @@ -0,0 +1,14 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/install_PELMO.R +\name{install_PELMO} +\alias{install_PELMO} +\title{Download FOCUS PELMO from the official site and unzip into the package installation directory} +\usage{ +install_PELMO(version = "5.5.3", local_zip = NULL) +} +\arguments{ +\item{version}{The FOCUS PELMO version to install} +} +\description{ +Download FOCUS PELMO from the official site and unzip into the package installation directory +} |