Fix NAMESPACE, update static docs, simplify Makefilev0.1-37

16 files changed, 42 insertions, 42 deletions

diff --git a/.Rbuildignore b/.Rbuildignore
index 0b413f5..536ef7d 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -7,3 +7,4 @@ aux$
 log$
 vignettes/chemCal.tex
 vignettes/chemCal.pdf
+chemCal_.*.tar.gz
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..7a59322
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,2 @@
+chemCal.Rcheck
+chemCal_*.tar.gz
diff --git a/DESCRIPTION b/DESCRIPTION
index e6e6384..33a64a4 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: chemCal
-Version: 0.1-36
-Date: 2015-10-07
+Version: 0.1-37
+Date: 2015-10-08
 Title: Calibration Functions for Analytical Chemistry
 Authors@R: c(person("Johannes", "Ranke", role = c("aut", "cre", "cph"), 
                     email = "jranke@uni-bremen.de"))
@@ -13,6 +13,5 @@ Description: Simple functions for plotting linear
 	The functions work on model objects from - optionally weighted - linear
 	regression (lm) or robust linear regression ('rlm' from the 'MASS' package).
 License: GPL (>= 2)
-URL: http://www.r-project.org, 
-	http://www.uft.uni-bremen.de/chemie/ranke,
-	http://kriemhild.uft.uni-bremen.de/viewcvs/?root=chemCal
+URL: http://www.r-project.org,
+  http://chem.uft.uni-bremen.de/ranke/?page=chemCal, http://cgit.jrwb.de/chemCal
diff --git a/GNUmakefile b/GNUmakefile
index c0d78e3..140f7e3 100644
--- a/GNUmakefile
+++ b/GNUmakefile
@@ -1,7 +1,7 @@
 PKGNAME := $(shell sed -n "s/Package: *\([^ ]*\)/\1/p" DESCRIPTION)
 PKGVERS := $(shell sed -n "s/Version: *\([^ ]*\)/\1/p" DESCRIPTION)
 PKGSRC  := $(shell basename $(PWD))
-TGZ     := ../$(PKGNAME)_$(PKGVERS).tar.gz
+TGZ     := $(PKGNAME)_$(PKGVERS).tar.gz
 
 # Specify the directory holding R binaries. To use an alternate R build (say a
 # pre-prelease version) use `make RBIN=/path/to/other/R/` or `export RBIN=...`
@@ -19,10 +19,11 @@ help:
 	@echo "-----------------"
 	@echo "  build                   Create the package"
 	@echo "  build-no-vignettes      Create the package without rebuilding vignettes"
-	@echo "  check                   Invoke build and then check the package"
-	@echo "  check-no-vignettes      Invoke build without rebuilding vignettes, and then check"
 	@echo "  install                 Invoke build and then install the result"
 	@echo "  install-no-vignettes    Invoke build without rebuilding vignettes and then install the result"
+	@echo "  check                   Invoke build and then check the package"
+	@echo "  check-no-vignettes      Invoke build without rebuilding vignettes, and then check"
+	@echo "  sd                      Build static documentation"
 	@echo "  winbuilder              Upload the build to winbuilder"
 	@echo ""
 	@echo "Using R in: $(RBIN)"
@@ -35,28 +36,22 @@ help:
 #------------------------------------------------------------------------------
 
 build:
-	cd ..;\
-		"$(RBIN)/R" CMD build $(PKGSRC)
+	"$(RBIN)/R" CMD build .
 
 build-no-vignettes:
-	cd ..;\
-		"$(RBIN)/R" CMD build $(PKGSRC) --no-build-vignettes
+	"$(RBIN)/R" CMD build --no-build-vignettes .
 
 install: build
-	cd ..;\
-		"$(RBIN)/R" CMD INSTALL $(TGZ)
+	"$(RBIN)/R" CMD INSTALL $(TGZ)
 
 install-no-vignettes: build-no-vignettes
-	cd ..;\
-		"$(RBIN)/R" CMD INSTALL $(TGZ)
+	"$(RBIN)/R" CMD INSTALL $(TGZ)
 
 check: build
-	cd ..;\
-		"$(RBIN)/R" CMD check --as-cran $(TGZ)
+	"$(RBIN)/R" CMD check --as-cran $(TGZ)
 
 check-no-vignettes: build-no-vignettes
-	cd ..;\
-		"$(RBIN)/R" CMD check --as-cran $(TGZ)
+	"$(RBIN)/R" CMD check --as-cran $(TGZ)
 
 sd:
 	@echo Now execute
diff --git a/NAMESPACE b/NAMESPACE
index 7daafff..7ca061a 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -9,3 +9,6 @@ S3method(loq, lm)
 S3method(inverse.predict, default)
 S3method(inverse.predict, lm)
 S3method(inverse.predict, rlm)
+
+importFrom("graphics", "legend", "matlines", "plot", "points")
+importFrom("stats", "optimize", "predict", "qt")
diff --git a/inst/web/calplot.lm.html b/inst/web/calplot.lm.html
index d463ffe..a8d3f4b 100644
--- a/inst/web/calplot.lm.html
+++ b/inst/web/calplot.lm.html
@@ -2,7 +2,7 @@
 <html lang="en">
   <head>
     <meta charset="utf-8">
-<title>calplot. chemCal 0.1-35.900</title>
+<title>calplot. chemCal 0.1-37</title>
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 <meta name="author" content="
   Johannes Ranke 
@@ -36,7 +36,7 @@
     <div class="navbar">
   <div class="navbar-inner">
     <div class="container">
-      <a class="brand" href="#">chemCal 0.1-35.900</a>
+      <a class="brand" href="#">chemCal 0.1-37</a>
       <div class="nav">
         <ul class="nav">
           <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
diff --git a/inst/web/chemCal-package.html b/inst/web/chemCal-package.html
index 823b7dc..def6014 100644
--- a/inst/web/chemCal-package.html
+++ b/inst/web/chemCal-package.html
@@ -2,7 +2,7 @@
 <html lang="en">
   <head>
     <meta charset="utf-8">
-<title>chemCal-package. chemCal 0.1-35.900</title>
+<title>chemCal-package. chemCal 0.1-37</title>
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 <meta name="author" content="
   Author and Maintainer: Johannes Ranke &lt;jranke@uni-bremen.de&gt;
@@ -34,7 +34,7 @@
     <div class="navbar">
   <div class="navbar-inner">
     <div class="container">
-      <a class="brand" href="#">chemCal 0.1-35.900</a>
+      <a class="brand" href="#">chemCal 0.1-37</a>
       <div class="nav">
         <ul class="nav">
           <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
diff --git a/inst/web/din32645.html b/inst/web/din32645.html
index 115d250..7d42e8f 100644
--- a/inst/web/din32645.html
+++ b/inst/web/din32645.html
@@ -2,7 +2,7 @@
 <html lang="en">
   <head>
     <meta charset="utf-8">
-<title>din32645. chemCal 0.1-35.900</title>
+<title>din32645. chemCal 0.1-37</title>
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 <meta name="author" content="">
 
@@ -32,7 +32,7 @@
     <div class="navbar">
   <div class="navbar-inner">
     <div class="container">
-      <a class="brand" href="#">chemCal 0.1-35.900</a>
+      <a class="brand" href="#">chemCal 0.1-37</a>
       <div class="nav">
         <ul class="nav">
           <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
@@ -74,8 +74,8 @@
       <p>DIN 32645 (equivalent to ISO 11843), Beuth Verlag, Berlin, 1994</p>
   
       <p>Dintest. Plugin for MS Excel for evaluations of calibration data. Written
-  by Georg Schmitt, University of Heidelberg. 
-  <a href = 'http://www.rzuser.uni-heidelberg.de/~df6/download/dintest.htm'>http://www.rzuser.uni-heidelberg.de/~df6/download/dintest.htm</a></p>
+  by Georg Schmitt, University of Heidelberg. Formerly available from
+  the Website of the University of Heidelberg.</p>
   
       <p>Currie, L. A. (1997) Nomenclature in evaluation of analytical methods including
   detection and quantification capabilities (IUPAC Recommendations 1995). 
diff --git a/inst/web/index.html b/inst/web/index.html
index 39c6b74..501c0d4 100644
--- a/inst/web/index.html
+++ b/inst/web/index.html
@@ -2,7 +2,7 @@
 <html lang="en">
   <head>
     <meta charset="utf-8">
-<title>Index. chemCal 0.1-35.900</title>
+<title>Index. chemCal 0.1-37</title>
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 <meta name="author" content="">
 
@@ -32,7 +32,7 @@
     <div class="navbar">
   <div class="navbar-inner">
     <div class="container">
-      <a class="brand" href="#">chemCal 0.1-35.900</a>
+      <a class="brand" href="#">chemCal 0.1-37</a>
       <div class="nav">
         <ul class="nav">
           <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
@@ -49,13 +49,13 @@
       
       <div class="row">
   <div class="span8">
-    chemCal provides simple functions for plotting linear
+    Simple functions for plotting linear
 calibration functions and estimating standard errors for measurements
 according to the Handbook of Chemometrics and Qualimetrics: Part A
 by Massart et al. There are also functions estimating the limit
 of detection (LOD) and limit of quantification (LOQ).
 The functions work on model objects from - optionally weighted - linear
-regression (lm) or robust linear regression (rlm from the MASS package).
+regression (lm) or robust linear regression ('rlm' from the 'MASS' package).
 
     <h2>Help topics</h2>
 
diff --git a/inst/web/inverse.predict.html b/inst/web/inverse.predict.html
index 855ee6a..a513357 100644
--- a/inst/web/inverse.predict.html
+++ b/inst/web/inverse.predict.html
@@ -2,7 +2,7 @@
 <html lang="en">
   <head>
     <meta charset="utf-8">
-<title>inverse.predict. chemCal 0.1-35.900</title>
+<title>inverse.predict. chemCal 0.1-37</title>
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 <meta name="author" content="">
 
@@ -32,7 +32,7 @@
     <div class="navbar">
   <div class="navbar-inner">
     <div class="container">
-      <a class="brand" href="#">chemCal 0.1-35.900</a>
+      <a class="brand" href="#">chemCal 0.1-37</a>
       <div class="nav">
         <ul class="nav">
           <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
diff --git a/inst/web/lod.html b/inst/web/lod.html
index e679821..966ce1a 100644
--- a/inst/web/lod.html
+++ b/inst/web/lod.html
@@ -2,7 +2,7 @@
 <html lang="en">
   <head>
     <meta charset="utf-8">
-<title>lod. chemCal 0.1-35.900</title>
+<title>lod. chemCal 0.1-37</title>
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 <meta name="author" content="">
 
@@ -32,7 +32,7 @@
     <div class="navbar">
   <div class="navbar-inner">
     <div class="container">
-      <a class="brand" href="#">chemCal 0.1-35.900</a>
+      <a class="brand" href="#">chemCal 0.1-37</a>
       <div class="nav">
         <ul class="nav">
           <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
diff --git a/inst/web/loq.html b/inst/web/loq.html
index dd03523..f628808 100644
--- a/inst/web/loq.html
+++ b/inst/web/loq.html
@@ -2,7 +2,7 @@
 <html lang="en">
   <head>
     <meta charset="utf-8">
-<title>loq. chemCal 0.1-35.900</title>
+<title>loq. chemCal 0.1-37</title>
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 <meta name="author" content="">
 
@@ -32,7 +32,7 @@
     <div class="navbar">
   <div class="navbar-inner">
     <div class="container">
-      <a class="brand" href="#">chemCal 0.1-35.900</a>
+      <a class="brand" href="#">chemCal 0.1-37</a>
       <div class="nav">
         <ul class="nav">
           <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
diff --git a/inst/web/massart97ex1.html b/inst/web/massart97ex1.html
index d64dbe3..1e1a0cd 100644
--- a/inst/web/massart97ex1.html
+++ b/inst/web/massart97ex1.html
@@ -2,7 +2,7 @@
 <html lang="en">
   <head>
     <meta charset="utf-8">
-<title>massart97ex1. chemCal 0.1-35.900</title>
+<title>massart97ex1. chemCal 0.1-37</title>
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 <meta name="author" content="">
 
@@ -32,7 +32,7 @@
     <div class="navbar">
   <div class="navbar-inner">
     <div class="container">
-      <a class="brand" href="#">chemCal 0.1-35.900</a>
+      <a class="brand" href="#">chemCal 0.1-37</a>
       <div class="nav">
         <ul class="nav">
           <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
diff --git a/inst/web/massart97ex3.html b/inst/web/massart97ex3.html
index 9f94ed8..45c0999 100644
--- a/inst/web/massart97ex3.html
+++ b/inst/web/massart97ex3.html
@@ -2,7 +2,7 @@
 <html lang="en">
   <head>
     <meta charset="utf-8">
-<title>massart97ex3. chemCal 0.1-35.900</title>
+<title>massart97ex3. chemCal 0.1-37</title>
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 <meta name="author" content="">
 
@@ -32,7 +32,7 @@
     <div class="navbar">
   <div class="navbar-inner">
     <div class="container">
-      <a class="brand" href="#">chemCal 0.1-35.900</a>
+      <a class="brand" href="#">chemCal 0.1-37</a>
       <div class="nav">
         <ul class="nav">
           <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
diff --git a/inst/web/vignettes/chemCal.pdf b/inst/web/vignettes/chemCal.pdf
index 90934e8..b216931 100644
--- a/inst/web/vignettes/chemCal.pdf
+++ b/inst/web/vignettes/chemCal.pdf
diff --git a/vignettes/chemCal.pdf b/vignettes/chemCal.pdf
index 90934e8..b216931 100644
--- a/vignettes/chemCal.pdf
+++ b/vignettes/chemCal.pdf