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authorranke <ranke@5fad18fb-23f0-0310-ab10-e59a3bee62b4>2012-09-11 23:56:14 +0000
committerranke <ranke@5fad18fb-23f0-0310-ab10-e59a3bee62b4>2012-09-11 23:56:14 +0000
commitb561996c588b6602b24aa1d236dee88f7c1d85a1 (patch)
treed3e4877c6b2ab0a249fba44955f2e611b69b7168 /branches
parentde25b97cfa4d97f0e7c3e1e845bfa91a200b91be (diff)
- Fixed the link to the bug report in the vignette - thanks to John Thaden for the hint
- Moved the vignette to the vignettes/ folder in order to avoid to write an .Rinstignore file - Made the vignette compile in trunk, the trunk contains unfinished stuff however git-svn-id: http://kriemhild.uft.uni-bremen.de/svn/chemCal@29 5fad18fb-23f0-0310-ab10-e59a3bee62b4
Diffstat (limited to 'branches')
-rw-r--r--branches/0.1/chemCal/DESCRIPTION6
-rw-r--r--branches/0.1/chemCal/inst/doc/chemCal-001.pdf1727
-rw-r--r--branches/0.1/chemCal/inst/doc/chemCal-002.pdf275
-rw-r--r--branches/0.1/chemCal/inst/doc/chemCal.pdfbin123575 -> 0 bytes
-rw-r--r--branches/0.1/chemCal/vignettes/Makefile (renamed from branches/0.1/chemCal/inst/doc/Makefile)0
-rw-r--r--branches/0.1/chemCal/vignettes/Rplots.ps (renamed from branches/0.1/chemCal/inst/doc/Rplots.ps)0
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal-001.eps (renamed from branches/0.1/chemCal/inst/doc/chemCal-001.eps)0
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal-001.pdfbin0 -> 12038 bytes
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal-002.eps (renamed from branches/0.1/chemCal/inst/doc/chemCal-002.eps)0
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal-002.pdfbin0 -> 5031 bytes
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal.Rnw (renamed from branches/0.1/chemCal/inst/doc/chemCal.Rnw)2
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal.aux (renamed from branches/0.1/chemCal/inst/doc/chemCal.aux)0
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal.bbl (renamed from branches/0.1/chemCal/inst/doc/chemCal.bbl)0
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal.blg (renamed from branches/0.1/chemCal/inst/doc/chemCal.blg)0
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal.log (renamed from branches/0.1/chemCal/inst/doc/chemCal.log)214
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal.out (renamed from branches/0.1/chemCal/inst/doc/chemCal.out)0
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal.pdfbin0 -> 179149 bytes
-rw-r--r--branches/0.1/chemCal/vignettes/chemCal.tex (renamed from branches/0.1/chemCal/inst/doc/chemCal.tex)12
18 files changed, 154 insertions, 2082 deletions
diff --git a/branches/0.1/chemCal/DESCRIPTION b/branches/0.1/chemCal/DESCRIPTION
index 323827b..ba96f47 100644
--- a/branches/0.1/chemCal/DESCRIPTION
+++ b/branches/0.1/chemCal/DESCRIPTION
@@ -1,6 +1,6 @@
Package: chemCal
-Version: 0.1-27
-Date: 2010-09-12
+Version: 0.1-28
+Date: 2012-09-11
Title: Calibration functions for analytical chemistry
Author: Johannes Ranke <jranke@uni-bremen.de>
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
@@ -12,7 +12,7 @@ Description: chemCal provides simple functions for plotting linear
of detection (LOQ) and limit of quantification (LOD).
The functions work on model objects from - optionally weighted - linear
regression (lm) or robust linear regression (rlm from the MASS package).
-License: GPL version 2 or newer
+License: GPL (>= 2)
URL: http://www.r-project.org,
http://www.uft.uni-bremen.de/chemie/ranke,
http://kriemhild.uft.uni-bremen.de/viewcvs/?root=chemCal
diff --git a/branches/0.1/chemCal/inst/doc/chemCal-001.pdf b/branches/0.1/chemCal/inst/doc/chemCal-001.pdf
deleted file mode 100644
index fcf034d..0000000
--- a/branches/0.1/chemCal/inst/doc/chemCal-001.pdf
+++ /dev/null
@@ -1,1727 +0,0 @@
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diff --git a/branches/0.1/chemCal/inst/doc/chemCal.Rnw b/branches/0.1/chemCal/vignettes/chemCal.Rnw
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--- a/branches/0.1/chemCal/inst/doc/chemCal.Rnw
+++ b/branches/0.1/chemCal/vignettes/chemCal.Rnw
@@ -22,7 +22,7 @@ At the moment, the package consists of four functions, working on univariate
linear models of class \texttt{lm} or \texttt{rlm}, plus to datasets for
validation.
-A \href{http://bugs.r-project.org/cgi-bin/R/wishlst-fulfilled?id=8877;user=guest}{bug
+A \href{http://bugs.r-project.org/bugzilla3/show_bug.cgi?id=8877}{bug
report (PR\#8877)} and the following e-mail exchange on the r-devel mailing list about
prediction intervals from weighted regression entailed some further studies
on this subject. However, I did not encounter any proof or explanation of the
diff --git a/branches/0.1/chemCal/inst/doc/chemCal.aux b/branches/0.1/chemCal/vignettes/chemCal.aux
index 20bfc98..20bfc98 100644
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index e69de29..e69de29 100644
--- a/branches/0.1/chemCal/inst/doc/chemCal.bbl
+++ b/branches/0.1/chemCal/vignettes/chemCal.bbl
diff --git a/branches/0.1/chemCal/inst/doc/chemCal.blg b/branches/0.1/chemCal/vignettes/chemCal.blg
index 72f5a0e..72f5a0e 100644
--- a/branches/0.1/chemCal/inst/doc/chemCal.blg
+++ b/branches/0.1/chemCal/vignettes/chemCal.blg
diff --git a/branches/0.1/chemCal/inst/doc/chemCal.log b/branches/0.1/chemCal/vignettes/chemCal.log
index 31eced3..3107ddd 100644
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+++ b/branches/0.1/chemCal/vignettes/chemCal.log
@@ -1,15 +1,16 @@
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diff --git a/branches/0.1/chemCal/inst/doc/chemCal.out b/branches/0.1/chemCal/vignettes/chemCal.out
index e69de29..e69de29 100644
--- a/branches/0.1/chemCal/inst/doc/chemCal.out
+++ b/branches/0.1/chemCal/vignettes/chemCal.out
diff --git a/branches/0.1/chemCal/vignettes/chemCal.pdf b/branches/0.1/chemCal/vignettes/chemCal.pdf
new file mode 100644
index 0000000..935b160
--- /dev/null
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Binary files differ
diff --git a/branches/0.1/chemCal/inst/doc/chemCal.tex b/branches/0.1/chemCal/vignettes/chemCal.tex
index 9617cda..6326126 100644
--- a/branches/0.1/chemCal/inst/doc/chemCal.tex
+++ b/branches/0.1/chemCal/vignettes/chemCal.tex
@@ -5,7 +5,7 @@
\title{Basic calibration functions for analytical chemistry}
\author{Johannes Ranke}
-\usepackage{/usr/share/R/share/texmf/Sweave}
+\usepackage{Sweave}
\begin{document}
\maketitle
@@ -23,7 +23,7 @@ At the moment, the package consists of four functions, working on univariate
linear models of class \texttt{lm} or \texttt{rlm}, plus to datasets for
validation.
-A \href{http://bugs.r-project.org/cgi-bin/R/wishlst-fulfilled?id=8877;user=guest}{bug
+A \href{http://bugs.r-project.org/bugzilla3/show_bug.cgi?id=8877}{bug
report (PR\#8877)} and the following e-mail exchange on the r-devel mailing list about
prediction intervals from weighted regression entailed some further studies
on this subject. However, I did not encounter any proof or explanation of the
@@ -52,7 +52,7 @@ provided by R:
\begin{Schunk}
\begin{Sinput}
-> plot(m0, which = 3)
+> plot(m0,which=3)
\end{Sinput}
\end{Schunk}
\includegraphics{chemCal-002}
@@ -66,7 +66,7 @@ is proposed which can be reproduced by
> yx <- split(y, x)
> ybar <- sapply(yx, mean)
> s <- round(sapply(yx, sd), digits = 2)
-> w <- round(1/(s^2), digits = 3)
+> w <- round(1 / (s^2), digits = 3)
> weights <- w[factor(x)]
> m <- lm(y ~ x, w = weights)
\end{Sinput}
@@ -77,14 +77,14 @@ we use the \texttt{inverse.predict} function:
\begin{Schunk}
\begin{Sinput}
-> inverse.predict(m, 15, ws = 1.67)
+> inverse.predict(m, 15, ws=1.67)
\end{Sinput}
\begin{Soutput}
$Prediction
[1] 5.865367
$`Standard Error`
-[1] 0.892611
+[1] 0.8926109
$Confidence
[1] 2.478285

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