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1 files changed, 44 insertions, 44 deletions

diff --git a/docs/reference/lod.html b/docs/reference/lod.html
index dcde1b3..e5a1158 100644
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+++ b/docs/reference/lod.html
@@ -8,21 +8,29 @@
 
 <title>Estimate a limit of detection (LOD) — lod • chemCal</title>
 
+
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@@ -30,8 +38,8 @@
 
 
 
-<meta property="og:title" content="Estimate a limit of detection (LOD) — lod" />
 
+<meta property="og:title" content="Estimate a limit of detection (LOD) — lod" />
 <meta property="og:description" content="The decision limit (German: Nachweisgrenze) is defined as the signal or
   analyte concentration that is significantly different from the blank signal
   with a first order error alpha (one-sided significance test).
@@ -40,7 +48,7 @@
   concentration where the probability that the signal is not detected although
   the analyte is present (type II or false negative error), is beta (also a
   one-sided significance test)." />
-<meta name="twitter:card" content="summary" />
+
 
 
 
@@ -54,9 +62,10 @@
 <![endif]-->
 
 
+
   </head>
 
-  <body>
+  <body data-spy="scroll" data-target="#toc">
     <div class="container template-reference-topic">
       <header>
       <div class="navbar navbar-default navbar-fixed-top" role="navigation">
@@ -78,7 +87,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fa fa-home fa-lg"></span>
+    <span class="fas fa fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -92,9 +101,13 @@
   <a href="../news/index.html">Changelog</a>
 </li>
       </ul>
-      
       <ul class="nav navbar-nav navbar-right">
-        
+        <li>
+  <a href="http://github.com/jranke/chemCal/">
+    <span class="fab fa fab fa-github fa-lg"></span>
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@@ -102,6 +115,7 @@
 </div><!--/.navbar -->
 
       
+
       </header>
 
 <div class="row">
@@ -113,7 +127,6 @@
     </div>
 
     <div class="ref-description">
-    
     <p>The decision limit (German: Nachweisgrenze) is defined as the signal or
   analyte concentration that is significantly different from the blank signal
   with a first order error alpha (one-sided significance test).
@@ -122,23 +135,22 @@
   concentration where the probability that the signal is not detected although
   the analyte is present (type II or false negative error), is beta (also a
   one-sided significance test).</p>
-    
     </div>
 
-    <pre class="usage">lod(object, &#8230;, alpha = 0.05, beta = 0.05, method = "default", tol = "default")</pre>
-    
+    <pre class="usage"><span class='fu'>lod</span>(<span class='no'>object</span>, <span class='no'>...</span>, <span class='kw'>alpha</span> <span class='kw'>=</span> <span class='fl'>0.05</span>, <span class='kw'>beta</span> <span class='kw'>=</span> <span class='fl'>0.05</span>, <span class='kw'>method</span> <span class='kw'>=</span> <span class='st'>"default"</span>, <span class='kw'>tol</span> <span class='kw'>=</span> <span class='st'>"default"</span>)</pre>
+
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
       <th>object</th>
-      <td><p>A univariate model object of class <code><a href='https://www.rdocumentation.org/packages/stats/topics/lm'>lm</a></code> or 
-    <code><a href='https://www.rdocumentation.org/packages/MASS/topics/rlm'>rlm</a></code> 
+      <td><p>A univariate model object of class <code><a href='https://rdrr.io/r/stats/lm.html'>lm</a></code> or 
+    <code><a href='https://rdrr.io/pkg/MASS/man/rlm.html'>rlm</a></code> 
     with model formula <code>y ~ x</code> or <code>y ~ x - 1</code>, 
     optionally from a weighted regression.</p></td>
     </tr>
     <tr>
-      <th>&#8230;</th>
+      <th>...</th>
       <td><p>Placeholder for further arguments that might be needed by 
     future implementations.</p></td>
     </tr>
@@ -165,12 +177,11 @@
     divided by 1000. Can be set to a numeric value to override this.</p></td>
     </tr>
     </table>
-    
+
     <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
 
     <p>A list containig the corresponding x and y values of the estimated limit of
   detection of a model used for calibration.</p>
-    
     <h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2>
 
     <p>- The default values for alpha and beta are the ones recommended by IUPAC.
@@ -178,9 +189,8 @@
     xD from the LOD in the signal domain SD is done by simply inverting the
     calibration function (i.e. assuming a known calibration function).
   - The calculation of a LOD from weighted calibration models requires
-    a weights argument for the internally used <code><a href='https://www.rdocumentation.org/packages/stats/topics/predict.lm'>predict.lm</a></code>
+    a weights argument for the internally used <code><a href='https://rdrr.io/r/stats/predict.lm.html'>predict.lm</a></code>
     function, which is currently not supported in R.</p>
-    
     <h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2>
 
     <p>Massart, L.M, Vandenginste, B.G.M., Buydens, L.M.C., De Jong, S., Lewi, P.J., 
@@ -192,14 +202,12 @@
 <p>Currie, L. A. (1997) Nomenclature in evaluation of analytical methods including
   detection and quantification capabilities (IUPAC Recommendations 1995). 
   Analytica Chimica Acta 391, 105 - 126.</p>
-    
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
     <div class='dont-index'><p>Examples for <code><a href='din32645.html'>din32645</a></code></p></div>
-    
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='no'>m</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/stats/topics/lm'>lm</a></span>(<span class='no'>y</span> ~ <span class='no'>x</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='no'>din32645</span>)
+    <pre class="examples"><div class='input'><span class='no'>m</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/stats/lm.html'>lm</a></span>(<span class='no'>y</span> ~ <span class='no'>x</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='no'>din32645</span>)
 <span class='fu'>lod</span>(<span class='no'>m</span>)</div><div class='output co'>#&gt; $x
 #&gt; [1] 0.08655484
 #&gt; 
@@ -215,38 +223,30 @@
 #&gt; [1] 3155.393
 #&gt; </div></pre>
   </div>
-  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
-    <h2>Contents</h2>
-    <ul class="nav nav-pills nav-stacked">
-      <li><a href="#arguments">Arguments</a></li>
-      
-      <li><a href="#value">Value</a></li>
-
-      <li><a href="#note">Note</a></li>
-
-      <li><a href="#references">References</a></li>
-
-      <li><a href="#see-also">See also</a></li>
-      
-      <li><a href="#examples">Examples</a></li>
-    </ul>
-
+  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+    <nav id="toc" data-toggle="toc" class="sticky-top">
+      <h2 data-toc-skip>Contents</h2>
+    </nav>
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-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
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