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authorJohannes Ranke <jranke@uni-bremen.de>2016-10-04 08:46:58 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2016-10-04 08:46:58 +0200
commitcf329866248fab96ea60d1d7ee20562a3da2eb54 (patch)
tree9c9785ca42917a30f37ed7cdab352abbba34ce21 /inst/web
parentb31824f420c9d904ab5f46774183a59e3b86cedd (diff)
Remove old version of static documentation
Diffstat (limited to 'inst/web')
-rw-r--r--inst/web/calplot.lm-2.pngbin21704 -> 0 bytes
-rw-r--r--inst/web/calplot.lm.html166
-rw-r--r--inst/web/chemCal-package.html96
-rw-r--r--inst/web/css/bootstrap-responsive.css815
-rw-r--r--inst/web/css/bootstrap-responsive.min.css9
-rw-r--r--inst/web/css/bootstrap.css4983
-rw-r--r--inst/web/css/bootstrap.min.css9
-rw-r--r--inst/web/css/highlight.css28
-rw-r--r--inst/web/css/staticdocs.css18
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-rw-r--r--inst/web/index.html143
-rw-r--r--inst/web/inverse.predict.html202
-rw-r--r--inst/web/js/bootstrap.js1825
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-rw-r--r--inst/web/lod.html198
-rw-r--r--inst/web/loq.html189
-rw-r--r--inst/web/massart97ex1.html98
-rw-r--r--inst/web/massart97ex3-5.pngbin16476 -> 0 bytes
-rw-r--r--inst/web/massart97ex3.html198
-rw-r--r--inst/web/vignettes/chemCal.pdfbin165905 -> 0 bytes
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diff --git a/inst/web/calplot.lm-2.png b/inst/web/calplot.lm-2.png
deleted file mode 100644
index db7fe6e..0000000
--- a/inst/web/calplot.lm-2.png
+++ /dev/null
Binary files differ
diff --git a/inst/web/calplot.lm.html b/inst/web/calplot.lm.html
deleted file mode 100644
index a8d3f4b..0000000
--- a/inst/web/calplot.lm.html
+++ /dev/null
@@ -1,166 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="utf-8">
-<title>calplot. chemCal 0.1-37</title>
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
-<meta name="author" content="
- Johannes Ranke
- &lt;a href='mailto:jranke@uni-bremen.de'&gt;jranke@uni-bremen.de&lt;/a&gt;
- &lt;a href = 'http://www.uft.uni-bremen.de/chemie/ranke'&gt;http://www.uft.uni-bremen.de/chemie/ranke&lt;/a&gt;
-">
-
-<link href="css/bootstrap.css" rel="stylesheet">
-<link href="css/bootstrap-responsive.css" rel="stylesheet">
-<link href="css/highlight.css" rel="stylesheet">
-<link href="css/staticdocs.css" rel="stylesheet">
-
-<!--[if lt IE 9]>
- <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
-<![endif]-->
-
-<script type="text/x-mathjax-config">
- MathJax.Hub.Config({
- tex2jax: {
- inlineMath: [ ['$','$'], ["\\(","\\)"] ],
- processEscapes: true
- }
- });
-</script>
-<script type="text/javascript"
- src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
-</script>
- </head>
-
- <body>
- <div class="navbar">
- <div class="navbar-inner">
- <div class="container">
- <a class="brand" href="#">chemCal 0.1-37</a>
- <div class="nav">
- <ul class="nav">
- <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
- </ul>
- </div>
- </div>
- </div>
-</div>
-
- <div class="container">
- <header>
-
- </header>
-
- <h1>Plot calibration graphs from univariate linear models</h1>
-
-<div class="row">
- <div class="span8">
- <h2>Usage</h2>
- <pre><div>calplot(object, xlim&nbsp;=&nbsp;c("auto", "auto"), ylim&nbsp;=&nbsp;c("auto", "auto"), xlab&nbsp;=&nbsp;"Concentration", ylab&nbsp;=&nbsp;"Response", alpha=0.05, varfunc&nbsp;=&nbsp;NULL)</div></pre>
-
- <h2>Arguments</h2>
- <dl>
- <dt>object</dt>
- <dd>
- A univariate model object of class <code><a href='http://www.inside-r.org/r-doc/stats/lm'>lm</a></code> or
- <code><a href='http://www.inside-r.org/r-doc/MASS/rlm'>rlm</a></code>
- with model formula <code>y ~ x</code> or <code>y ~ x - 1</code>.
- </dd>
- <dt>xlim</dt>
- <dd>
- The limits of the plot on the x axis.
- </dd>
- <dt>ylim</dt>
- <dd>
- The limits of the plot on the y axis.
- </dd>
- <dt>xlab</dt>
- <dd>
- The label of the x axis.
- </dd>
- <dt>ylab</dt>
- <dd>
- The label of the y axis.
- </dd>
- <dt>alpha</dt>
- <dd>
- The error tolerance level for the confidence and prediction bands. Note that this
- includes both tails of the Gaussian distribution, unlike the alpha and beta parameters
- used in <code><a href='lod.html'>lod</a></code> (see note below).
- </dd>
- <dt>varfunc</dt>
- <dd>
- The variance function for generating the weights in the model.
- Currently, this argument is ignored (see note below).
- </dd>
- </dl>
-
- <div class="Description">
- <h2>Description</h2>
-
- <p>Produce graphics of calibration data, the fitted model as well
- as confidence, and, for unweighted regression, prediction bands.</p>
-
- </div>
-
- <div class="Value">
- <h2>Value</h2>
-
- <p><dl>
- A plot of the calibration data, of your fitted model as well as lines showing
- the confidence limits. Prediction limits are only shown for models from
- unweighted regression.
-</dl></p>
-
- </div>
-
- <div class="Note">
- <h2>Note</h2>
-
- <p>Prediction bands for models from weighted linear regression require weights
- for the data, for which responses should be predicted. Prediction intervals
- using weights e.g. from a variance function are currently not supported by
- the internally used function <code><a href='http://www.inside-r.org/r-doc/stats/predict.lm'>predict.lm</a></code>, therefore,
- <code>calplot</code> does not draw prediction bands for such models.</p>
-
- <p>It is possible to compare the <code><a href='calplot.lm.html'>calplot</a></code> prediction bands with the
- <code><a href='lod.html'>lod</a></code> values if the <code>lod()</code> alpha and beta parameters are
- half the value of the <code>calplot()</code> alpha parameter.</p>
-
- <p></p>
-
- </div>
-
- <h2 id="examples">Examples</h2>
- <pre class="examples"><div class='input'>data(massart97ex3)
-m &lt;- lm(y ~ x, data = massart97ex3)
-calplot(m)
-</div>
-<p><img src='calplot.lm-2.png' alt='' width='540' height='400' /></p></pre>
- </div>
- <div class="span4">
- <!-- <ul>
- <li>calplot</li><li>calplot.default</li><li>calplot.lm</li>
- </ul>
- <ul>
- <li>regression</li>
- </ul> -->
-
-
- <h2>Author</h2>
-
- Johannes Ranke
- <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
- <a href = 'http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
-
-
- </div>
-</div>
-
- <footer>
- <p class="pull-right"><a href="#">Back to top</a></p>
-<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
- </footer>
- </div>
- </body>
-</html> \ No newline at end of file
diff --git a/inst/web/chemCal-package.html b/inst/web/chemCal-package.html
deleted file mode 100644
index def6014..0000000
--- a/inst/web/chemCal-package.html
+++ /dev/null
@@ -1,96 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="utf-8">
-<title>chemCal-package. chemCal 0.1-37</title>
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
-<meta name="author" content="
- Author and Maintainer: Johannes Ranke &lt;jranke@uni-bremen.de&gt;
-">
-
-<link href="css/bootstrap.css" rel="stylesheet">
-<link href="css/bootstrap-responsive.css" rel="stylesheet">
-<link href="css/highlight.css" rel="stylesheet">
-<link href="css/staticdocs.css" rel="stylesheet">
-
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-
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- }
- });
-</script>
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- src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
-</script>
- </head>
-
- <body>
- <div class="navbar">
- <div class="navbar-inner">
- <div class="container">
- <a class="brand" href="#">chemCal 0.1-37</a>
- <div class="nav">
- <ul class="nav">
- <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
- </ul>
- </div>
- </div>
- </div>
-</div>
-
- <div class="container">
- <header>
-
- </header>
-
- <h1>
- Calibration functions for analytical chemistry
-</h1>
-
-<div class="row">
- <div class="span8">
-
- <div class="Description">
- <h2>Description</h2>
-
- <p>See <a href = '../DESCRIPTION'>../DESCRIPTION</a></p>
-
- </div>
-
- <div class="Details">
- <h2>Details</h2>
-
- <p>There is a package vignette located in <a href = '../doc/chemCal.pdf'>../doc/chemCal.pdf</a>.</p>
-
- </div>
- </div>
- <div class="span4">
- <!-- <ul>
- <li>chemCal-package</li>
- </ul>
- <ul>
- <li>manip</li>
- </ul> -->
-
-
- <h2>Author</h2>
-
- Author and Maintainer: Johannes Ranke <jranke@uni-bremen.de>
-
-
- </div>
-</div>
-
- <footer>
- <p class="pull-right"><a href="#">Back to top</a></p>
-<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
- </footer>
- </div>
- </body>
-</html> \ No newline at end of file
diff --git a/inst/web/css/bootstrap-responsive.css b/inst/web/css/bootstrap-responsive.css
deleted file mode 100644
index 06e55c0..0000000
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@@ -1,815 +0,0 @@
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- *
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diff --git a/inst/web/css/bootstrap-responsive.min.css b/inst/web/css/bootstrap-responsive.min.css
deleted file mode 100644
index 1f55036..0000000
--- a/inst/web/css/bootstrap-responsive.min.css
+++ /dev/null
@@ -1,9 +0,0 @@
-/*!
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diff --git a/inst/web/css/bootstrap.css b/inst/web/css/bootstrap.css
deleted file mode 100644
index bb40c85..0000000
--- a/inst/web/css/bootstrap.css
+++ /dev/null
@@ -1,4983 +0,0 @@
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diff --git a/inst/web/css/bootstrap.min.css b/inst/web/css/bootstrap.min.css
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-<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="utf-8">
-<title>din32645. chemCal 0.1-37</title>
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
-<meta name="author" content="">
-
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- <div class="navbar">
- <div class="navbar-inner">
- <div class="container">
- <a class="brand" href="#">chemCal 0.1-37</a>
- <div class="nav">
- <ul class="nav">
- <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
- </ul>
- </div>
- </div>
- </div>
-</div>
-
- <div class="container">
- <header>
-
- </header>
-
- <h1>Calibration data from DIN 32645</h1>
-
-<div class="row">
- <div class="span8">
- <h2>Usage</h2>
- <pre><div>data(din32645)</div></pre>
-
- <div class="Description">
- <h2>Description</h2>
-
- <p>Sample dataset to test the package.</p>
-
- </div>
-
- <div class="Format">
- <h2>Format</h2>
-
- <p>A dataframe containing 10 rows of x and y values.</p>
-
- </div>
-
- <div class="References">
- <h2>References</h2>
-
- <p>DIN 32645 (equivalent to ISO 11843), Beuth Verlag, Berlin, 1994</p>
-
- <p>Dintest. Plugin for MS Excel for evaluations of calibration data. Written
- by Georg Schmitt, University of Heidelberg. Formerly available from
- the Website of the University of Heidelberg.</p>
-
- <p>Currie, L. A. (1997) Nomenclature in evaluation of analytical methods including
- detection and quantification capabilities (IUPAC Recommendations 1995).
- Analytica Chimica Acta 391, 105 - 126.</p>
-
- </div>
-
- <h2 id="examples">Examples</h2>
- <pre class="examples"><div class='input'>data(din32645)
-m &lt;- lm(y ~ x, data = din32645)
-calplot(m)
-</div>
-<p><img src='din32645-2.png' alt='' width='540' height='400' /></p>
-<div class='input'>
-## Prediction of x with confidence interval
-(prediction &lt;- inverse.predict(m, 3500, alpha = 0.01))
-</div>
-<div class='output'>$Prediction
-[1] 0.1054792
-
-$`Standard Error`
-[1] 0.02215619
-
-$Confidence
-[1] 0.07434261
-
-$`Confidence Limits`
-[1] 0.03113656 0.17982178
-
-</div>
-<div class='input'>
-# This should give 0.07434 according to test data from Dintest, which
-# was collected from Procontrol 3.1 (isomehr GmbH) in this case
-round(prediction$Confidence,5)
-</div>
-<div class='output'>[1] 0.07434
-</div>
-<div class='input'>
-## Critical value:
-(crit &lt;- lod(m, alpha = 0.01, beta = 0.5))
-</div>
-<div class='output'>$x
-[1] 0.0698127
-
-$y
- 1
-3155.393
-
-</div>
-<div class='input'>
-# According to DIN 32645, we should get 0.07 for the critical value
-# (decision limit, &quot;Nachweisgrenze&quot;)
-round(crit$x, 2)
-</div>
-<div class='output'>[1] 0.07
-</div>
-<div class='input'># and according to Dintest test data, we should get 0.0698 from
-round(crit$x, 4)
-</div>
-<div class='output'>[1] 0.0698
-</div>
-<div class='input'>
-## Limit of detection (smallest detectable value given alpha and beta)
-# In German, the smallest detectable value is the &quot;Erfassungsgrenze&quot;, and we
-# should get 0.14 according to DIN, which we achieve by using the method
-# described in it:
-lod.din &lt;- lod(m, alpha = 0.01, beta = 0.01, method = &quot;din&quot;)
-round(lod.din$x, 2)
-</div>
-<div class='output'>[1] 0.14
-</div>
-<div class='input'>
-## Limit of quantification
-# This accords to the test data coming with the test data from Dintest again,
-# except for the last digits of the value cited for Procontrol 3.1 (0.2121)
-(loq &lt;- loq(m, alpha = 0.01))
-</div>
-<div class='output'>$x
-[1] 0.2119575
-
-$y
- 1
-4528.787
-
-</div>
-<div class='input'>round(loq$x,4)
-</div>
-<div class='output'>[1] 0.212
-</div>
-<div class='input'>
-# A similar value is obtained using the approximation
-# LQ = 3.04 * LC (Currie 1999, p. 120)
-3.04 * lod(m,alpha = 0.01, beta = 0.5)$x
-</div>
-<div class='output'>[1] 0.2122306
-</div></pre>
- </div>
- <div class="span4">
- <!-- <ul>
- <li>din32645</li>
- </ul>
- <ul>
- <li>datasets</li>
- </ul> -->
-
-
- </div>
-</div>
-
- <footer>
- <p class="pull-right"><a href="#">Back to top</a></p>
-<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
- </footer>
- </div>
- </body>
-</html> \ No newline at end of file
diff --git a/inst/web/img/glyphicons-halflings-white.png b/inst/web/img/glyphicons-halflings-white.png
deleted file mode 100644
index 3bf6484..0000000
--- a/inst/web/img/glyphicons-halflings-white.png
+++ /dev/null
Binary files differ
diff --git a/inst/web/img/glyphicons-halflings.png b/inst/web/img/glyphicons-halflings.png
deleted file mode 100644
index 79bc568..0000000
--- a/inst/web/img/glyphicons-halflings.png
+++ /dev/null
Binary files differ
diff --git a/inst/web/index.html b/inst/web/index.html
deleted file mode 100644
index 501c0d4..0000000
--- a/inst/web/index.html
+++ /dev/null
@@ -1,143 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="utf-8">
-<title>Index. chemCal 0.1-37</title>
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
-<meta name="author" content="">
-
-<link href="css/bootstrap.css" rel="stylesheet">
-<link href="css/bootstrap-responsive.css" rel="stylesheet">
-<link href="css/highlight.css" rel="stylesheet">
-<link href="css/staticdocs.css" rel="stylesheet">
-
-<!--[if lt IE 9]>
- <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
-<![endif]-->
-
-<script type="text/x-mathjax-config">
- MathJax.Hub.Config({
- tex2jax: {
- inlineMath: [ ['$','$'], ["\\(","\\)"] ],
- processEscapes: true
- }
- });
-</script>
-<script type="text/javascript"
- src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
-</script>
- </head>
-
- <body>
- <div class="navbar">
- <div class="navbar-inner">
- <div class="container">
- <a class="brand" href="#">chemCal 0.1-37</a>
- <div class="nav">
- <ul class="nav">
- <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
- </ul>
- </div>
- </div>
- </div>
-</div>
-
- <div class="container">
- <header>
-
- </header>
-
- <div class="row">
- <div class="span8">
- Simple functions for plotting linear
-calibration functions and estimating standard errors for measurements
-according to the Handbook of Chemometrics and Qualimetrics: Part A
-by Massart et al. There are also functions estimating the limit
-of detection (LOD) and limit of quantification (LOQ).
-The functions work on model objects from - optionally weighted - linear
-regression (lm) or robust linear regression ('rlm' from the 'MASS' package).
-
- <h2>Help topics</h2>
-
- <h3>Main functions</h3>
- <p>Essential functionality</p>
-
-
- <ul class="index">
-
- <li>
- <code><a href="inverse.predict.html">inverse.predict</a></code>(inverse.predict.lm, inverse.predict.rlm, inverse.predict.default)<br />Predict x from y for a linear calibration</li>
-
- <li>
- <code><a href="calplot.lm.html">calplot</a></code>(calplot.default, calplot.lm)<br />Plot calibration graphs from univariate linear models</li>
-
- </ul>
- <h3>LOD and LOQ</h3>
- <p>Limit of detection and limit of quantification</p>
-
-
- <ul class="index">
-
- <li>
- <code><a href="lod.html">lod</a></code>(lod.lm, lod.rlm, lod.default)<br />Estimate a limit of detection (LOD)</li>
-
- <li>
- <code><a href="loq.html">loq</a></code>(loq.lm, loq.rlm, loq.default)<br />Estimate a limit of quantification (LOQ)</li>
-
- </ul>
- <h3>Datasets</h3>
- <p>Example data</p>
-
-
- <ul class="index">
-
- <li>
- <code><a href="din32645.html">din32645</a></code><br />Calibration data from DIN 32645</li>
-
- <li>
- <code><a href="massart97ex1.html">massart97ex1</a></code><br />Calibration data from Massart et al. (1997), example 1</li>
-
- </ul>
- <h3>Other</h3>
-
-
- <ul class="index">
-
- <li>
- <code><a href="chemCal-package.html">chemCal-package</a></code><br /> Calibration functions for analytical chemistry
-</li>
-
- <li>
- <code><a href="massart97ex3.html">massart97ex3</a></code><br />Calibration data from Massart et al. (1997), example 3</li>
-
- </ul>
- </div>
-
- <div class="span3 offset1">
- <h2>Vignettes</h2>
- <ul>
- <li><a href="vignettes/chemCal.pdf">Short manual for the chemCal package</a></li>
- </ul>
-
- <h2>Dependencies</h2>
- <ul>
-
-
- <li><strong>Suggests</strong>: MASS</li>
-
- </ul>
- <h2>Authors</h2>
- <ul>
- <li><a href="mailto:jranke@uni-bremen.de">Johannes Ranke</a> [aut, cre, cph]</li>
- </ul>
-
- </div>
-</div>
-
- <footer>
- <p class="pull-right"><a href="#">Back to top</a></p>
-<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
- </footer>
- </div>
- </body>
-</html> \ No newline at end of file
diff --git a/inst/web/inverse.predict.html b/inst/web/inverse.predict.html
deleted file mode 100644
index a513357..0000000
--- a/inst/web/inverse.predict.html
+++ /dev/null
@@ -1,202 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="utf-8">
-<title>inverse.predict. chemCal 0.1-37</title>
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
-<meta name="author" content="">
-
-<link href="css/bootstrap.css" rel="stylesheet">
-<link href="css/bootstrap-responsive.css" rel="stylesheet">
-<link href="css/highlight.css" rel="stylesheet">
-<link href="css/staticdocs.css" rel="stylesheet">
-
-<!--[if lt IE 9]>
- <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
-<![endif]-->
-
-<script type="text/x-mathjax-config">
- MathJax.Hub.Config({
- tex2jax: {
- inlineMath: [ ['$','$'], ["\\(","\\)"] ],
- processEscapes: true
- }
- });
-</script>
-<script type="text/javascript"
- src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
-</script>
- </head>
-
- <body>
- <div class="navbar">
- <div class="navbar-inner">
- <div class="container">
- <a class="brand" href="#">chemCal 0.1-37</a>
- <div class="nav">
- <ul class="nav">
- <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
- </ul>
- </div>
- </div>
- </div>
-</div>
-
- <div class="container">
- <header>
-
- </header>
-
- <h1>Predict x from y for a linear calibration</h1>
-
-<div class="row">
- <div class="span8">
- <h2>Usage</h2>
- <pre><div>inverse.predict(object, newdata, ..., ws, alpha=0.05, var.s&nbsp;=&nbsp;"auto")</div></pre>
-
- <h2>Arguments</h2>
- <dl>
- <dt>object</dt>
- <dd>
- A univariate model object of class <code><a href='http://www.inside-r.org/r-doc/stats/lm'>lm</a></code> or
- <code><a href='http://www.inside-r.org/r-doc/MASS/rlm'>rlm</a></code>
- with model formula <code>y ~ x</code> or <code>y ~ x - 1</code>.
- </dd>
- <dt>newdata</dt>
- <dd>
- A vector of observed y values for one sample.
- </dd>
- <dt>...</dt>
- <dd>
- Placeholder for further arguments that might be needed by
- future implementations.
- </dd>
- <dt>ws</dt>
- <dd>
- The weight attributed to the sample. This argument is obligatory
- if <code>object</code> has weights.
- </dd>
- <dt>alpha</dt>
- <dd>
- The error tolerance level for the confidence interval to be reported.
- </dd>
- <dt>var.s</dt>
- <dd>
- The estimated variance of the sample measurements. The default is to take
- the residual standard error from the calibration and to adjust it
- using <code>ws</code>, if applicable. This means that <code>var.s</code>
- overrides <code>ws</code>.
- </dd>
- </dl>
-
- <div class="Value">
- <h2>Value</h2>
-
- <p><dl>
- A list containing the predicted x value, its standard error and a
- confidence interval.
-</dl></p>
-
- </div>
-
- <div class="Description">
- <h2>Description</h2>
-
- <p>This function predicts x values using a univariate linear model that has been
- generated for the purpose of calibrating a measurement method. Prediction
- intervals are given at the specified confidence level.
- The calculation method was taken from Massart et al. (1997). In particular,
- Equations 8.26 and 8.28 were combined in order to yield a general treatment
- of inverse prediction for univariate linear models, taking into account
- weights that have been used to create the linear model, and at the same
- time providing the possibility to specify a precision in sample measurements
- differing from the precision in standard samples used for the calibration.
- This is elaborated in the package vignette.</p>
-
- </div>
-
- <div class="Note">
- <h2>Note</h2>
-
- <p>The function was validated with examples 7 and 8 from Massart et al. (1997).</p>
-
- </div>
-
- <div class="References">
- <h2>References</h2>
-
- <p>Massart, L.M, Vandenginste, B.G.M., Buydens, L.M.C., De Jong, S., Lewi, P.J.,
- Smeyers-Verbeke, J. (1997) Handbook of Chemometrics and Qualimetrics: Part A,
- p. 200</p>
-
- </div>
-
- <h2 id="examples">Examples</h2>
- <pre class="examples"><div class='input'># This is example 7 from Chapter 8 in Massart et al. (1997)
-data(massart97ex1)
-m &lt;- lm(y ~ x, data = massart97ex1)
-inverse.predict(m, 15) # 6.1 +- 4.9
-</div>
-<div class='output'>$Prediction
-[1] 6.09381
-
-$`Standard Error`
-[1] 1.767278
-
-$Confidence
-[1] 4.906751
-
-$`Confidence Limits`
-[1] 1.187059 11.000561
-
-</div>
-<div class='input'>inverse.predict(m, 90) # 43.9 +- 4.9
-</div>
-<div class='output'>$Prediction
-[1] 43.93983
-
-$`Standard Error`
-[1] 1.767747
-
-$Confidence
-[1] 4.908053
-
-$`Confidence Limits`
-[1] 39.03178 48.84788
-
-</div>
-<div class='input'>inverse.predict(m, rep(90,5)) # 43.9 +- 3.2
-</div>
-<div class='output'>$Prediction
-[1] 43.93983
-
-$`Standard Error`
-[1] 1.141204
-
-$Confidence
-[1] 3.168489
-
-$`Confidence Limits`
-[1] 40.77134 47.10832
-
-</div></pre>
- </div>
- <div class="span4">
- <!-- <ul>
- <li>inverse.predict</li><li>inverse.predict.lm</li><li>inverse.predict.rlm</li><li>inverse.predict.default</li>
- </ul>
- <ul>
- <li>manip</li>
- </ul> -->
-
-
- </div>
-</div>
-
- <footer>
- <p class="pull-right"><a href="#">Back to top</a></p>
-<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
- </footer>
- </div>
- </body>
-</html> \ No newline at end of file
diff --git a/inst/web/js/bootstrap.js b/inst/web/js/bootstrap.js
deleted file mode 100644
index 5d6e65b..0000000
--- a/inst/web/js/bootstrap.js
+++ /dev/null
@@ -1,1825 +0,0 @@
-/* ===================================================
- * bootstrap-transition.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#transitions
- * ===================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ========================================================== */
-
-
-!function ($) {
-
- $(function () {
-
- "use strict"; // jshint ;_;
-
-
- /* CSS TRANSITION SUPPORT (http://www.modernizr.com/)
- * ======================================================= */
-
- $.support.transition = (function () {
-
- var transitionEnd = (function () {
-
- var el = document.createElement('bootstrap')
- , transEndEventNames = {
- 'WebkitTransition' : 'webkitTransitionEnd'
- , 'MozTransition' : 'transitionend'
- , 'OTransition' : 'oTransitionEnd'
- , 'msTransition' : 'MSTransitionEnd'
- , 'transition' : 'transitionend'
- }
- , name
-
- for (name in transEndEventNames){
- if (el.style[name] !== undefined) {
- return transEndEventNames[name]
- }
- }
-
- }())
-
- return transitionEnd && {
- end: transitionEnd
- }
-
- })()
-
- })
-
-}(window.jQuery);/* ==========================================================
- * bootstrap-alert.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#alerts
- * ==========================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ========================================================== */
-
-
-!function ($) {
-
- "use strict"; // jshint ;_;
-
-
- /* ALERT CLASS DEFINITION
- * ====================== */
-
- var dismiss = '[data-dismiss="alert"]'
- , Alert = function (el) {
- $(el).on('click', dismiss, this.close)
- }
-
- Alert.prototype.close = function (e) {
- var $this = $(this)
- , selector = $this.attr('data-target')
- , $parent
-
- if (!selector) {
- selector = $this.attr('href')
- selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7
- }
-
- $parent = $(selector)
-
- e && e.preventDefault()
-
- $parent.length || ($parent = $this.hasClass('alert') ? $this : $this.parent())
-
- $parent.trigger(e = $.Event('close'))
-
- if (e.isDefaultPrevented()) return
-
- $parent.removeClass('in')
-
- function removeElement() {
- $parent
- .trigger('closed')
- .remove()
- }
-
- $.support.transition && $parent.hasClass('fade') ?
- $parent.on($.support.transition.end, removeElement) :
- removeElement()
- }
-
-
- /* ALERT PLUGIN DEFINITION
- * ======================= */
-
- $.fn.alert = function (option) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('alert')
- if (!data) $this.data('alert', (data = new Alert(this)))
- if (typeof option == 'string') data[option].call($this)
- })
- }
-
- $.fn.alert.Constructor = Alert
-
-
- /* ALERT DATA-API
- * ============== */
-
- $(function () {
- $('body').on('click.alert.data-api', dismiss, Alert.prototype.close)
- })
-
-}(window.jQuery);/* ============================================================
- * bootstrap-button.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#buttons
- * ============================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ============================================================ */
-
-
-!function ($) {
-
- "use strict"; // jshint ;_;
-
-
- /* BUTTON PUBLIC CLASS DEFINITION
- * ============================== */
-
- var Button = function (element, options) {
- this.$element = $(element)
- this.options = $.extend({}, $.fn.button.defaults, options)
- }
-
- Button.prototype.setState = function (state) {
- var d = 'disabled'
- , $el = this.$element
- , data = $el.data()
- , val = $el.is('input') ? 'val' : 'html'
-
- state = state + 'Text'
- data.resetText || $el.data('resetText', $el[val]())
-
- $el[val](data[state] || this.options[state])
-
- // push to event loop to allow forms to submit
- setTimeout(function () {
- state == 'loadingText' ?
- $el.addClass(d).attr(d, d) :
- $el.removeClass(d).removeAttr(d)
- }, 0)
- }
-
- Button.prototype.toggle = function () {
- var $parent = this.$element.parent('[data-toggle="buttons-radio"]')
-
- $parent && $parent
- .find('.active')
- .removeClass('active')
-
- this.$element.toggleClass('active')
- }
-
-
- /* BUTTON PLUGIN DEFINITION
- * ======================== */
-
- $.fn.button = function (option) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('button')
- , options = typeof option == 'object' && option
- if (!data) $this.data('button', (data = new Button(this, options)))
- if (option == 'toggle') data.toggle()
- else if (option) data.setState(option)
- })
- }
-
- $.fn.button.defaults = {
- loadingText: 'loading...'
- }
-
- $.fn.button.Constructor = Button
-
-
- /* BUTTON DATA-API
- * =============== */
-
- $(function () {
- $('body').on('click.button.data-api', '[data-toggle^=button]', function ( e ) {
- var $btn = $(e.target)
- if (!$btn.hasClass('btn')) $btn = $btn.closest('.btn')
- $btn.button('toggle')
- })
- })
-
-}(window.jQuery);/* ==========================================================
- * bootstrap-carousel.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#carousel
- * ==========================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ========================================================== */
-
-
-!function ($) {
-
- "use strict"; // jshint ;_;
-
-
- /* CAROUSEL CLASS DEFINITION
- * ========================= */
-
- var Carousel = function (element, options) {
- this.$element = $(element)
- this.options = options
- this.options.slide && this.slide(this.options.slide)
- this.options.pause == 'hover' && this.$element
- .on('mouseenter', $.proxy(this.pause, this))
- .on('mouseleave', $.proxy(this.cycle, this))
- }
-
- Carousel.prototype = {
-
- cycle: function (e) {
- if (!e) this.paused = false
- this.options.interval
- && !this.paused
- && (this.interval = setInterval($.proxy(this.next, this), this.options.interval))
- return this
- }
-
- , to: function (pos) {
- var $active = this.$element.find('.active')
- , children = $active.parent().children()
- , activePos = children.index($active)
- , that = this
-
- if (pos > (children.length - 1) || pos < 0) return
-
- if (this.sliding) {
- return this.$element.one('slid', function () {
- that.to(pos)
- })
- }
-
- if (activePos == pos) {
- return this.pause().cycle()
- }
-
- return this.slide(pos > activePos ? 'next' : 'prev', $(children[pos]))
- }
-
- , pause: function (e) {
- if (!e) this.paused = true
- clearInterval(this.interval)
- this.interval = null
- return this
- }
-
- , next: function () {
- if (this.sliding) return
- return this.slide('next')
- }
-
- , prev: function () {
- if (this.sliding) return
- return this.slide('prev')
- }
-
- , slide: function (type, next) {
- var $active = this.$element.find('.active')
- , $next = next || $active[type]()
- , isCycling = this.interval
- , direction = type == 'next' ? 'left' : 'right'
- , fallback = type == 'next' ? 'first' : 'last'
- , that = this
- , e = $.Event('slide')
-
- this.sliding = true
-
- isCycling && this.pause()
-
- $next = $next.length ? $next : this.$element.find('.item')[fallback]()
-
- if ($next.hasClass('active')) return
-
- if ($.support.transition && this.$element.hasClass('slide')) {
- this.$element.trigger(e)
- if (e.isDefaultPrevented()) return
- $next.addClass(type)
- $next[0].offsetWidth // force reflow
- $active.addClass(direction)
- $next.addClass(direction)
- this.$element.one($.support.transition.end, function () {
- $next.removeClass([type, direction].join(' ')).addClass('active')
- $active.removeClass(['active', direction].join(' '))
- that.sliding = false
- setTimeout(function () { that.$element.trigger('slid') }, 0)
- })
- } else {
- this.$element.trigger(e)
- if (e.isDefaultPrevented()) return
- $active.removeClass('active')
- $next.addClass('active')
- this.sliding = false
- this.$element.trigger('slid')
- }
-
- isCycling && this.cycle()
-
- return this
- }
-
- }
-
-
- /* CAROUSEL PLUGIN DEFINITION
- * ========================== */
-
- $.fn.carousel = function (option) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('carousel')
- , options = $.extend({}, $.fn.carousel.defaults, typeof option == 'object' && option)
- if (!data) $this.data('carousel', (data = new Carousel(this, options)))
- if (typeof option == 'number') data.to(option)
- else if (typeof option == 'string' || (option = options.slide)) data[option]()
- else if (options.interval) data.cycle()
- })
- }
-
- $.fn.carousel.defaults = {
- interval: 5000
- , pause: 'hover'
- }
-
- $.fn.carousel.Constructor = Carousel
-
-
- /* CAROUSEL DATA-API
- * ================= */
-
- $(function () {
- $('body').on('click.carousel.data-api', '[data-slide]', function ( e ) {
- var $this = $(this), href
- , $target = $($this.attr('data-target') || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7
- , options = !$target.data('modal') && $.extend({}, $target.data(), $this.data())
- $target.carousel(options)
- e.preventDefault()
- })
- })
-
-}(window.jQuery);/* =============================================================
- * bootstrap-collapse.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#collapse
- * =============================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ============================================================ */
-
-
-!function ($) {
-
- "use strict"; // jshint ;_;
-
-
- /* COLLAPSE PUBLIC CLASS DEFINITION
- * ================================ */
-
- var Collapse = function (element, options) {
- this.$element = $(element)
- this.options = $.extend({}, $.fn.collapse.defaults, options)
-
- if (this.options.parent) {
- this.$parent = $(this.options.parent)
- }
-
- this.options.toggle && this.toggle()
- }
-
- Collapse.prototype = {
-
- constructor: Collapse
-
- , dimension: function () {
- var hasWidth = this.$element.hasClass('width')
- return hasWidth ? 'width' : 'height'
- }
-
- , show: function () {
- var dimension
- , scroll
- , actives
- , hasData
-
- if (this.transitioning) return
-
- dimension = this.dimension()
- scroll = $.camelCase(['scroll', dimension].join('-'))
- actives = this.$parent && this.$parent.find('> .accordion-group > .in')
-
- if (actives && actives.length) {
- hasData = actives.data('collapse')
- if (hasData && hasData.transitioning) return
- actives.collapse('hide')
- hasData || actives.data('collapse', null)
- }
-
- this.$element[dimension](0)
- this.transition('addClass', $.Event('show'), 'shown')
- this.$element[dimension](this.$element[0][scroll])
- }
-
- , hide: function () {
- var dimension
- if (this.transitioning) return
- dimension = this.dimension()
- this.reset(this.$element[dimension]())
- this.transition('removeClass', $.Event('hide'), 'hidden')
- this.$element[dimension](0)
- }
-
- , reset: function (size) {
- var dimension = this.dimension()
-
- this.$element
- .removeClass('collapse')
- [dimension](size || 'auto')
- [0].offsetWidth
-
- this.$element[size !== null ? 'addClass' : 'removeClass']('collapse')
-
- return this
- }
-
- , transition: function (method, startEvent, completeEvent) {
- var that = this
- , complete = function () {
- if (startEvent.type == 'show') that.reset()
- that.transitioning = 0
- that.$element.trigger(completeEvent)
- }
-
- this.$element.trigger(startEvent)
-
- if (startEvent.isDefaultPrevented()) return
-
- this.transitioning = 1
-
- this.$element[method]('in')
-
- $.support.transition && this.$element.hasClass('collapse') ?
- this.$element.one($.support.transition.end, complete) :
- complete()
- }
-
- , toggle: function () {
- this[this.$element.hasClass('in') ? 'hide' : 'show']()
- }
-
- }
-
-
- /* COLLAPSIBLE PLUGIN DEFINITION
- * ============================== */
-
- $.fn.collapse = function (option) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('collapse')
- , options = typeof option == 'object' && option
- if (!data) $this.data('collapse', (data = new Collapse(this, options)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.collapse.defaults = {
- toggle: true
- }
-
- $.fn.collapse.Constructor = Collapse
-
-
- /* COLLAPSIBLE DATA-API
- * ==================== */
-
- $(function () {
- $('body').on('click.collapse.data-api', '[data-toggle=collapse]', function ( e ) {
- var $this = $(this), href
- , target = $this.attr('data-target')
- || e.preventDefault()
- || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '') //strip for ie7
- , option = $(target).data('collapse') ? 'toggle' : $this.data()
- $(target).collapse(option)
- })
- })
-
-}(window.jQuery);/* ============================================================
- * bootstrap-dropdown.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#dropdowns
- * ============================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ============================================================ */
-
-
-!function ($) {
-
- "use strict"; // jshint ;_;
-
-
- /* DROPDOWN CLASS DEFINITION
- * ========================= */
-
- var toggle = '[data-toggle="dropdown"]'
- , Dropdown = function (element) {
- var $el = $(element).on('click.dropdown.data-api', this.toggle)
- $('html').on('click.dropdown.data-api', function () {
- $el.parent().removeClass('open')
- })
- }
-
- Dropdown.prototype = {
-
- constructor: Dropdown
-
- , toggle: function (e) {
- var $this = $(this)
- , $parent
- , selector
- , isActive
-
- if ($this.is('.disabled, :disabled')) return
-
- selector = $this.attr('data-target')
-
- if (!selector) {
- selector = $this.attr('href')
- selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7
- }
-
- $parent = $(selector)
- $parent.length || ($parent = $this.parent())
-
- isActive = $parent.hasClass('open')
-
- clearMenus()
-
- if (!isActive) $parent.toggleClass('open')
-
- return false
- }
-
- }
-
- function clearMenus() {
- $(toggle).parent().removeClass('open')
- }
-
-
- /* DROPDOWN PLUGIN DEFINITION
- * ========================== */
-
- $.fn.dropdown = function (option) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('dropdown')
- if (!data) $this.data('dropdown', (data = new Dropdown(this)))
- if (typeof option == 'string') data[option].call($this)
- })
- }
-
- $.fn.dropdown.Constructor = Dropdown
-
-
- /* APPLY TO STANDARD DROPDOWN ELEMENTS
- * =================================== */
-
- $(function () {
- $('html').on('click.dropdown.data-api', clearMenus)
- $('body')
- .on('click.dropdown', '.dropdown form', function (e) { e.stopPropagation() })
- .on('click.dropdown.data-api', toggle, Dropdown.prototype.toggle)
- })
-
-}(window.jQuery);/* =========================================================
- * bootstrap-modal.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#modals
- * =========================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ========================================================= */
-
-
-!function ($) {
-
- "use strict"; // jshint ;_;
-
-
- /* MODAL CLASS DEFINITION
- * ====================== */
-
- var Modal = function (content, options) {
- this.options = options
- this.$element = $(content)
- .delegate('[data-dismiss="modal"]', 'click.dismiss.modal', $.proxy(this.hide, this))
- }
-
- Modal.prototype = {
-
- constructor: Modal
-
- , toggle: function () {
- return this[!this.isShown ? 'show' : 'hide']()
- }
-
- , show: function () {
- var that = this
- , e = $.Event('show')
-
- this.$element.trigger(e)
-
- if (this.isShown || e.isDefaultPrevented()) return
-
- $('body').addClass('modal-open')
-
- this.isShown = true
-
- escape.call(this)
- backdrop.call(this, function () {
- var transition = $.support.transition && that.$element.hasClass('fade')
-
- if (!that.$element.parent().length) {
- that.$element.appendTo(document.body) //don't move modals dom position
- }
-
- that.$element
- .show()
-
- if (transition) {
- that.$element[0].offsetWidth // force reflow
- }
-
- that.$element.addClass('in')
-
- transition ?
- that.$element.one($.support.transition.end, function () { that.$element.trigger('shown') }) :
- that.$element.trigger('shown')
-
- })
- }
-
- , hide: function (e) {
- e && e.preventDefault()
-
- var that = this
-
- e = $.Event('hide')
-
- this.$element.trigger(e)
-
- if (!this.isShown || e.isDefaultPrevented()) return
-
- this.isShown = false
-
- $('body').removeClass('modal-open')
-
- escape.call(this)
-
- this.$element.removeClass('in')
-
- $.support.transition && this.$element.hasClass('fade') ?
- hideWithTransition.call(this) :
- hideModal.call(this)
- }
-
- }
-
-
- /* MODAL PRIVATE METHODS
- * ===================== */
-
- function hideWithTransition() {
- var that = this
- , timeout = setTimeout(function () {
- that.$element.off($.support.transition.end)
- hideModal.call(that)
- }, 500)
-
- this.$element.one($.support.transition.end, function () {
- clearTimeout(timeout)
- hideModal.call(that)
- })
- }
-
- function hideModal(that) {
- this.$element
- .hide()
- .trigger('hidden')
-
- backdrop.call(this)
- }
-
- function backdrop(callback) {
- var that = this
- , animate = this.$element.hasClass('fade') ? 'fade' : ''
-
- if (this.isShown && this.options.backdrop) {
- var doAnimate = $.support.transition && animate
-
- this.$backdrop = $('<div class="modal-backdrop ' + animate + '" />')
- .appendTo(document.body)
-
- if (this.options.backdrop != 'static') {
- this.$backdrop.click($.proxy(this.hide, this))
- }
-
- if (doAnimate) this.$backdrop[0].offsetWidth // force reflow
-
- this.$backdrop.addClass('in')
-
- doAnimate ?
- this.$backdrop.one($.support.transition.end, callback) :
- callback()
-
- } else if (!this.isShown && this.$backdrop) {
- this.$backdrop.removeClass('in')
-
- $.support.transition && this.$element.hasClass('fade')?
- this.$backdrop.one($.support.transition.end, $.proxy(removeBackdrop, this)) :
- removeBackdrop.call(this)
-
- } else if (callback) {
- callback()
- }
- }
-
- function removeBackdrop() {
- this.$backdrop.remove()
- this.$backdrop = null
- }
-
- function escape() {
- var that = this
- if (this.isShown && this.options.keyboard) {
- $(document).on('keyup.dismiss.modal', function ( e ) {
- e.which == 27 && that.hide()
- })
- } else if (!this.isShown) {
- $(document).off('keyup.dismiss.modal')
- }
- }
-
-
- /* MODAL PLUGIN DEFINITION
- * ======================= */
-
- $.fn.modal = function (option) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('modal')
- , options = $.extend({}, $.fn.modal.defaults, $this.data(), typeof option == 'object' && option)
- if (!data) $this.data('modal', (data = new Modal(this, options)))
- if (typeof option == 'string') data[option]()
- else if (options.show) data.show()
- })
- }
-
- $.fn.modal.defaults = {
- backdrop: true
- , keyboard: true
- , show: true
- }
-
- $.fn.modal.Constructor = Modal
-
-
- /* MODAL DATA-API
- * ============== */
-
- $(function () {
- $('body').on('click.modal.data-api', '[data-toggle="modal"]', function ( e ) {
- var $this = $(this), href
- , $target = $($this.attr('data-target') || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7
- , option = $target.data('modal') ? 'toggle' : $.extend({}, $target.data(), $this.data())
-
- e.preventDefault()
- $target.modal(option)
- })
- })
-
-}(window.jQuery);/* ===========================================================
- * bootstrap-tooltip.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#tooltips
- * Inspired by the original jQuery.tipsy by Jason Frame
- * ===========================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ========================================================== */
-
-
-!function ($) {
-
- "use strict"; // jshint ;_;
-
-
- /* TOOLTIP PUBLIC CLASS DEFINITION
- * =============================== */
-
- var Tooltip = function (element, options) {
- this.init('tooltip', element, options)
- }
-
- Tooltip.prototype = {
-
- constructor: Tooltip
-
- , init: function (type, element, options) {
- var eventIn
- , eventOut
-
- this.type = type
- this.$element = $(element)
- this.options = this.getOptions(options)
- this.enabled = true
-
- if (this.options.trigger != 'manual') {
- eventIn = this.options.trigger == 'hover' ? 'mouseenter' : 'focus'
- eventOut = this.options.trigger == 'hover' ? 'mouseleave' : 'blur'
- this.$element.on(eventIn, this.options.selector, $.proxy(this.enter, this))
- this.$element.on(eventOut, this.options.selector, $.proxy(this.leave, this))
- }
-
- this.options.selector ?
- (this._options = $.extend({}, this.options, { trigger: 'manual', selector: '' })) :
- this.fixTitle()
- }
-
- , getOptions: function (options) {
- options = $.extend({}, $.fn[this.type].defaults, options, this.$element.data())
-
- if (options.delay && typeof options.delay == 'number') {
- options.delay = {
- show: options.delay
- , hide: options.delay
- }
- }
-
- return options
- }
-
- , enter: function (e) {
- var self = $(e.currentTarget)[this.type](this._options).data(this.type)
-
- if (!self.options.delay || !self.options.delay.show) return self.show()
-
- clearTimeout(this.timeout)
- self.hoverState = 'in'
- this.timeout = setTimeout(function() {
- if (self.hoverState == 'in') self.show()
- }, self.options.delay.show)
- }
-
- , leave: function (e) {
- var self = $(e.currentTarget)[this.type](this._options).data(this.type)
-
- if (this.timeout) clearTimeout(this.timeout)
- if (!self.options.delay || !self.options.delay.hide) return self.hide()
-
- self.hoverState = 'out'
- this.timeout = setTimeout(function() {
- if (self.hoverState == 'out') self.hide()
- }, self.options.delay.hide)
- }
-
- , show: function () {
- var $tip
- , inside
- , pos
- , actualWidth
- , actualHeight
- , placement
- , tp
-
- if (this.hasContent() && this.enabled) {
- $tip = this.tip()
- this.setContent()
-
- if (this.options.animation) {
- $tip.addClass('fade')
- }
-
- placement = typeof this.options.placement == 'function' ?
- this.options.placement.call(this, $tip[0], this.$element[0]) :
- this.options.placement
-
- inside = /in/.test(placement)
-
- $tip
- .remove()
- .css({ top: 0, left: 0, display: 'block' })
- .appendTo(inside ? this.$element : document.body)
-
- pos = this.getPosition(inside)
-
- actualWidth = $tip[0].offsetWidth
- actualHeight = $tip[0].offsetHeight
-
- switch (inside ? placement.split(' ')[1] : placement) {
- case 'bottom':
- tp = {top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2}
- break
- case 'top':
- tp = {top: pos.top - actualHeight, left: pos.left + pos.width / 2 - actualWidth / 2}
- break
- case 'left':
- tp = {top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left - actualWidth}
- break
- case 'right':
- tp = {top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left + pos.width}
- break
- }
-
- $tip
- .css(tp)
- .addClass(placement)
- .addClass('in')
- }
- }
-
- , isHTML: function(text) {
- // html string detection logic adapted from jQuery
- return typeof text != 'string'
- || ( text.charAt(0) === "<"
- && text.charAt( text.length - 1 ) === ">"
- && text.length >= 3
- ) || /^(?:[^<]*<[\w\W]+>[^>]*$)/.exec(text)
- }
-
- , setContent: function () {
- var $tip = this.tip()
- , title = this.getTitle()
-
- $tip.find('.tooltip-inner')[this.isHTML(title) ? 'html' : 'text'](title)
- $tip.removeClass('fade in top bottom left right')
- }
-
- , hide: function () {
- var that = this
- , $tip = this.tip()
-
- $tip.removeClass('in')
-
- function removeWithAnimation() {
- var timeout = setTimeout(function () {
- $tip.off($.support.transition.end).remove()
- }, 500)
-
- $tip.one($.support.transition.end, function () {
- clearTimeout(timeout)
- $tip.remove()
- })
- }
-
- $.support.transition && this.$tip.hasClass('fade') ?
- removeWithAnimation() :
- $tip.remove()
- }
-
- , fixTitle: function () {
- var $e = this.$element
- if ($e.attr('title') || typeof($e.attr('data-original-title')) != 'string') {
- $e.attr('data-original-title', $e.attr('title') || '').removeAttr('title')
- }
- }
-
- , hasContent: function () {
- return this.getTitle()
- }
-
- , getPosition: function (inside) {
- return $.extend({}, (inside ? {top: 0, left: 0} : this.$element.offset()), {
- width: this.$element[0].offsetWidth
- , height: this.$element[0].offsetHeight
- })
- }
-
- , getTitle: function () {
- var title
- , $e = this.$element
- , o = this.options
-
- title = $e.attr('data-original-title')
- || (typeof o.title == 'function' ? o.title.call($e[0]) : o.title)
-
- return title
- }
-
- , tip: function () {
- return this.$tip = this.$tip || $(this.options.template)
- }
-
- , validate: function () {
- if (!this.$element[0].parentNode) {
- this.hide()
- this.$element = null
- this.options = null
- }
- }
-
- , enable: function () {
- this.enabled = true
- }
-
- , disable: function () {
- this.enabled = false
- }
-
- , toggleEnabled: function () {
- this.enabled = !this.enabled
- }
-
- , toggle: function () {
- this[this.tip().hasClass('in') ? 'hide' : 'show']()
- }
-
- }
-
-
- /* TOOLTIP PLUGIN DEFINITION
- * ========================= */
-
- $.fn.tooltip = function ( option ) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('tooltip')
- , options = typeof option == 'object' && option
- if (!data) $this.data('tooltip', (data = new Tooltip(this, options)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.tooltip.Constructor = Tooltip
-
- $.fn.tooltip.defaults = {
- animation: true
- , placement: 'top'
- , selector: false
- , template: '<div class="tooltip"><div class="tooltip-arrow"></div><div class="tooltip-inner"></div></div>'
- , trigger: 'hover'
- , title: ''
- , delay: 0
- }
-
-}(window.jQuery);
-/* ===========================================================
- * bootstrap-popover.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#popovers
- * ===========================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * =========================================================== */
-
-
-!function ($) {
-
- "use strict"; // jshint ;_;
-
-
- /* POPOVER PUBLIC CLASS DEFINITION
- * =============================== */
-
- var Popover = function ( element, options ) {
- this.init('popover', element, options)
- }
-
-
- /* NOTE: POPOVER EXTENDS BOOTSTRAP-TOOLTIP.js
- ========================================== */
-
- Popover.prototype = $.extend({}, $.fn.tooltip.Constructor.prototype, {
-
- constructor: Popover
-
- , setContent: function () {
- var $tip = this.tip()
- , title = this.getTitle()
- , content = this.getContent()
-
- $tip.find('.popover-title')[this.isHTML(title) ? 'html' : 'text'](title)
- $tip.find('.popover-content > *')[this.isHTML(content) ? 'html' : 'text'](content)
-
- $tip.removeClass('fade top bottom left right in')
- }
-
- , hasContent: function () {
- return this.getTitle() || this.getContent()
- }
-
- , getContent: function () {
- var content
- , $e = this.$element
- , o = this.options
-
- content = $e.attr('data-content')
- || (typeof o.content == 'function' ? o.content.call($e[0]) : o.content)
-
- return content
- }
-
- , tip: function () {
- if (!this.$tip) {
- this.$tip = $(this.options.template)
- }
- return this.$tip
- }
-
- })
-
-
- /* POPOVER PLUGIN DEFINITION
- * ======================= */
-
- $.fn.popover = function (option) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('popover')
- , options = typeof option == 'object' && option
- if (!data) $this.data('popover', (data = new Popover(this, options)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.popover.Constructor = Popover
-
- $.fn.popover.defaults = $.extend({} , $.fn.tooltip.defaults, {
- placement: 'right'
- , content: ''
- , template: '<div class="popover"><div class="arrow"></div><div class="popover-inner"><h3 class="popover-title"></h3><div class="popover-content"><p></p></div></div></div>'
- })
-
-}(window.jQuery);/* =============================================================
- * bootstrap-scrollspy.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#scrollspy
- * =============================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ============================================================== */
-
-
-!function ($) {
-
- "use strict"; // jshint ;_;
-
-
- /* SCROLLSPY CLASS DEFINITION
- * ========================== */
-
- function ScrollSpy( element, options) {
- var process = $.proxy(this.process, this)
- , $element = $(element).is('body') ? $(window) : $(element)
- , href
- this.options = $.extend({}, $.fn.scrollspy.defaults, options)
- this.$scrollElement = $element.on('scroll.scroll.data-api', process)
- this.selector = (this.options.target
- || ((href = $(element).attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7
- || '') + ' .nav li > a'
- this.$body = $('body')
- this.refresh()
- this.process()
- }
-
- ScrollSpy.prototype = {
-
- constructor: ScrollSpy
-
- , refresh: function () {
- var self = this
- , $targets
-
- this.offsets = $([])
- this.targets = $([])
-
- $targets = this.$body
- .find(this.selector)
- .map(function () {
- var $el = $(this)
- , href = $el.data('target') || $el.attr('href')
- , $href = /^#\w/.test(href) && $(href)
- return ( $href
- && href.length
- && [[ $href.position().top, href ]] ) || null
- })
- .sort(function (a, b) { return a[0] - b[0] })
- .each(function () {
- self.offsets.push(this[0])
- self.targets.push(this[1])
- })
- }
-
- , process: function () {
- var scrollTop = this.$scrollElement.scrollTop() + this.options.offset
- , scrollHeight = this.$scrollElement[0].scrollHeight || this.$body[0].scrollHeight
- , maxScroll = scrollHeight - this.$scrollElement.height()
- , offsets = this.offsets
- , targets = this.targets
- , activeTarget = this.activeTarget
- , i
-
- if (scrollTop >= maxScroll) {
- return activeTarget != (i = targets.last()[0])
- && this.activate ( i )
- }
-
- for (i = offsets.length; i--;) {
- activeTarget != targets[i]
- && scrollTop >= offsets[i]
- && (!offsets[i + 1] || scrollTop <= offsets[i + 1])
- && this.activate( targets[i] )
- }
- }
-
- , activate: function (target) {
- var active
- , selector
-
- this.activeTarget = target
-
- $(this.selector)
- .parent('.active')
- .removeClass('active')
-
- selector = this.selector
- + '[data-target="' + target + '"],'
- + this.selector + '[href="' + target + '"]'
-
- active = $(selector)
- .parent('li')
- .addClass('active')
-
- if (active.parent('.dropdown-menu')) {
- active = active.closest('li.dropdown').addClass('active')
- }
-
- active.trigger('activate')
- }
-
- }
-
-
- /* SCROLLSPY PLUGIN DEFINITION
- * =========================== */
-
- $.fn.scrollspy = function ( option ) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('scrollspy')
- , options = typeof option == 'object' && option
- if (!data) $this.data('scrollspy', (data = new ScrollSpy(this, options)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.scrollspy.Constructor = ScrollSpy
-
- $.fn.scrollspy.defaults = {
- offset: 10
- }
-
-
- /* SCROLLSPY DATA-API
- * ================== */
-
- $(function () {
- $('[data-spy="scroll"]').each(function () {
- var $spy = $(this)
- $spy.scrollspy($spy.data())
- })
- })
-
-}(window.jQuery);/* ========================================================
- * bootstrap-tab.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#tabs
- * ========================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ======================================================== */
-
-
-!function ($) {
-
- "use strict"; // jshint ;_;
-
-
- /* TAB CLASS DEFINITION
- * ==================== */
-
- var Tab = function ( element ) {
- this.element = $(element)
- }
-
- Tab.prototype = {
-
- constructor: Tab
-
- , show: function () {
- var $this = this.element
- , $ul = $this.closest('ul:not(.dropdown-menu)')
- , selector = $this.attr('data-target')
- , previous
- , $target
- , e
-
- if (!selector) {
- selector = $this.attr('href')
- selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7
- }
-
- if ( $this.parent('li').hasClass('active') ) return
-
- previous = $ul.find('.active a').last()[0]
-
- e = $.Event('show', {
- relatedTarget: previous
- })
-
- $this.trigger(e)
-
- if (e.isDefaultPrevented()) return
-
- $target = $(selector)
-
- this.activate($this.parent('li'), $ul)
- this.activate($target, $target.parent(), function () {
- $this.trigger({
- type: 'shown'
- , relatedTarget: previous
- })
- })
- }
-
- , activate: function ( element, container, callback) {
- var $active = container.find('> .active')
- , transition = callback
- && $.support.transition
- && $active.hasClass('fade')
-
- function next() {
- $active
- .removeClass('active')
- .find('> .dropdown-menu > .active')
- .removeClass('active')
-
- element.addClass('active')
-
- if (transition) {
- element[0].offsetWidth // reflow for transition
- element.addClass('in')
- } else {
- element.removeClass('fade')
- }
-
- if ( element.parent('.dropdown-menu') ) {
- element.closest('li.dropdown').addClass('active')
- }
-
- callback && callback()
- }
-
- transition ?
- $active.one($.support.transition.end, next) :
- next()
-
- $active.removeClass('in')
- }
- }
-
-
- /* TAB PLUGIN DEFINITION
- * ===================== */
-
- $.fn.tab = function ( option ) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('tab')
- if (!data) $this.data('tab', (data = new Tab(this)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.tab.Constructor = Tab
-
-
- /* TAB DATA-API
- * ============ */
-
- $(function () {
- $('body').on('click.tab.data-api', '[data-toggle="tab"], [data-toggle="pill"]', function (e) {
- e.preventDefault()
- $(this).tab('show')
- })
- })
-
-}(window.jQuery);/* =============================================================
- * bootstrap-typeahead.js v2.0.4
- * http://twitter.github.com/bootstrap/javascript.html#typeahead
- * =============================================================
- * Copyright 2012 Twitter, Inc.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- * ============================================================ */
-
-
-!function($){
-
- "use strict"; // jshint ;_;
-
-
- /* TYPEAHEAD PUBLIC CLASS DEFINITION
- * ================================= */
-
- var Typeahead = function (element, options) {
- this.$element = $(element)
- this.options = $.extend({}, $.fn.typeahead.defaults, options)
- this.matcher = this.options.matcher || this.matcher
- this.sorter = this.options.sorter || this.sorter
- this.highlighter = this.options.highlighter || this.highlighter
- this.updater = this.options.updater || this.updater
- this.$menu = $(this.options.menu).appendTo('body')
- this.source = this.options.source
- this.shown = false
- this.listen()
- }
-
- Typeahead.prototype = {
-
- constructor: Typeahead
-
- , select: function () {
- var val = this.$menu.find('.active').attr('data-value')
- this.$element
- .val(this.updater(val))
- .change()
- return this.hide()
- }
-
- , updater: function (item) {
- return item
- }
-
- , show: function () {
- var pos = $.extend({}, this.$element.offset(), {
- height: this.$element[0].offsetHeight
- })
-
- this.$menu.css({
- top: pos.top + pos.height
- , left: pos.left
- })
-
- this.$menu.show()
- this.shown = true
- return this
- }
-
- , hide: function () {
- this.$menu.hide()
- this.shown = false
- return this
- }
-
- , lookup: function (event) {
- var that = this
- , items
- , q
-
- this.query = this.$element.val()
-
- if (!this.query) {
- return this.shown ? this.hide() : this
- }
-
- items = $.grep(this.source, function (item) {
- return that.matcher(item)
- })
-
- items = this.sorter(items)
-
- if (!items.length) {
- return this.shown ? this.hide() : this
- }
-
- return this.render(items.slice(0, this.options.items)).show()
- }
-
- , matcher: function (item) {
- return ~item.toLowerCase().indexOf(this.query.toLowerCase())
- }
-
- , sorter: function (items) {
- var beginswith = []
- , caseSensitive = []
- , caseInsensitive = []
- , item
-
- while (item = items.shift()) {
- if (!item.toLowerCase().indexOf(this.query.toLowerCase())) beginswith.push(item)
- else if (~item.indexOf(this.query)) caseSensitive.push(item)
- else caseInsensitive.push(item)
- }
-
- return beginswith.concat(caseSensitive, caseInsensitive)
- }
-
- , highlighter: function (item) {
- var query = this.query.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g, '\\$&')
- return item.replace(new RegExp('(' + query + ')', 'ig'), function ($1, match) {
- return '<strong>' + match + '</strong>'
- })
- }
-
- , render: function (items) {
- var that = this
-
- items = $(items).map(function (i, item) {
- i = $(that.options.item).attr('data-value', item)
- i.find('a').html(that.highlighter(item))
- return i[0]
- })
-
- items.first().addClass('active')
- this.$menu.html(items)
- return this
- }
-
- , next: function (event) {
- var active = this.$menu.find('.active').removeClass('active')
- , next = active.next()
-
- if (!next.length) {
- next = $(this.$menu.find('li')[0])
- }
-
- next.addClass('active')
- }
-
- , prev: function (event) {
- var active = this.$menu.find('.active').removeClass('active')
- , prev = active.prev()
-
- if (!prev.length) {
- prev = this.$menu.find('li').last()
- }
-
- prev.addClass('active')
- }
-
- , listen: function () {
- this.$element
- .on('blur', $.proxy(this.blur, this))
- .on('keypress', $.proxy(this.keypress, this))
- .on('keyup', $.proxy(this.keyup, this))
-
- if ($.browser.webkit || $.browser.msie) {
- this.$element.on('keydown', $.proxy(this.keypress, this))
- }
-
- this.$menu
- .on('click', $.proxy(this.click, this))
- .on('mouseenter', 'li', $.proxy(this.mouseenter, this))
- }
-
- , keyup: function (e) {
- switch(e.keyCode) {
- case 40: // down arrow
- case 38: // up arrow
- break
-
- case 9: // tab
- case 13: // enter
- if (!this.shown) return
- this.select()
- break
-
- case 27: // escape
- if (!this.shown) return
- this.hide()
- break
-
- default:
- this.lookup()
- }
-
- e.stopPropagation()
- e.preventDefault()
- }
-
- , keypress: function (e) {
- if (!this.shown) return
-
- switch(e.keyCode) {
- case 9: // tab
- case 13: // enter
- case 27: // escape
- e.preventDefault()
- break
-
- case 38: // up arrow
- if (e.type != 'keydown') break
- e.preventDefault()
- this.prev()
- break
-
- case 40: // down arrow
- if (e.type != 'keydown') break
- e.preventDefault()
- this.next()
- break
- }
-
- e.stopPropagation()
- }
-
- , blur: function (e) {
- var that = this
- setTimeout(function () { that.hide() }, 150)
- }
-
- , click: function (e) {
- e.stopPropagation()
- e.preventDefault()
- this.select()
- }
-
- , mouseenter: function (e) {
- this.$menu.find('.active').removeClass('active')
- $(e.currentTarget).addClass('active')
- }
-
- }
-
-
- /* TYPEAHEAD PLUGIN DEFINITION
- * =========================== */
-
- $.fn.typeahead = function (option) {
- return this.each(function () {
- var $this = $(this)
- , data = $this.data('typeahead')
- , options = typeof option == 'object' && option
- if (!data) $this.data('typeahead', (data = new Typeahead(this, options)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.typeahead.defaults = {
- source: []
- , items: 8
- , menu: '<ul class="typeahead dropdown-menu"></ul>'
- , item: '<li><a href="#"></a></li>'
- }
-
- $.fn.typeahead.Constructor = Typeahead
-
-
- /* TYPEAHEAD DATA-API
- * ================== */
-
- $(function () {
- $('body').on('focus.typeahead.data-api', '[data-provide="typeahead"]', function (e) {
- var $this = $(this)
- if ($this.data('typeahead')) return
- e.preventDefault()
- $this.typeahead($this.data())
- })
- })
-
-}(window.jQuery); \ No newline at end of file
diff --git a/inst/web/js/bootstrap.min.js b/inst/web/js/bootstrap.min.js
deleted file mode 100644
index 1435698..0000000
--- a/inst/web/js/bootstrap.min.js
+++ /dev/null
@@ -1,6 +0,0 @@
-/*!
-* Bootstrap.js by @fat & @mdo
-* Copyright 2012 Twitter, Inc.
-* http://www.apache.org/licenses/LICENSE-2.0.txt
-*/
-!function(a){a(function(){"use strict",a.support.transition=function(){var a=function(){var a=document.createElement("bootstrap"),b={WebkitTransition:"webkitTransitionEnd",MozTransition:"transitionend",OTransition:"oTransitionEnd",msTransition:"MSTransitionEnd",transition:"transitionend"},c;for(c in b)if(a.style[c]!==undefined)return b[c]}();return a&&{end:a}}()})}(window.jQuery),!function(a){"use strict";var b='[data-dismiss="alert"]',c=function(c){a(c).on("click",b,this.close)};c.prototype.close=function(b){function f(){e.trigger("closed").remove()}var c=a(this),d=c.attr("data-target"),e;d||(d=c.attr("href"),d=d&&d.replace(/.*(?=#[^\s]*$)/,"")),e=a(d),b&&b.preventDefault(),e.length||(e=c.hasClass("alert")?c:c.parent()),e.trigger(b=a.Event("close"));if(b.isDefaultPrevented())return;e.removeClass("in"),a.support.transition&&e.hasClass("fade")?e.on(a.support.transition.end,f):f()},a.fn.alert=function(b){return this.each(function(){var d=a(this),e=d.data("alert");e||d.data("alert",e=new c(this)),typeof b=="string"&&e[b].call(d)})},a.fn.alert.Constructor=c,a(function(){a("body").on("click.alert.data-api",b,c.prototype.close)})}(window.jQuery),!function(a){"use strict";var b=function(b,c){this.$element=a(b),this.options=a.extend({},a.fn.button.defaults,c)};b.prototype.setState=function(a){var b="disabled",c=this.$element,d=c.data(),e=c.is("input")?"val":"html";a+="Text",d.resetText||c.data("resetText",c[e]()),c[e](d[a]||this.options[a]),setTimeout(function(){a=="loadingText"?c.addClass(b).attr(b,b):c.removeClass(b).removeAttr(b)},0)},b.prototype.toggle=function(){var a=this.$element.parent('[data-toggle="buttons-radio"]');a&&a.find(".active").removeClass("active"),this.$element.toggleClass("active")},a.fn.button=function(c){return this.each(function(){var d=a(this),e=d.data("button"),f=typeof c=="object"&&c;e||d.data("button",e=new b(this,f)),c=="toggle"?e.toggle():c&&e.setState(c)})},a.fn.button.defaults={loadingText:"loading..."},a.fn.button.Constructor=b,a(function(){a("body").on("click.button.data-api","[data-toggle^=button]",function(b){var c=a(b.target);c.hasClass("btn")||(c=c.closest(".btn")),c.button("toggle")})})}(window.jQuery),!function(a){"use strict";var b=function(b,c){this.$element=a(b),this.options=c,this.options.slide&&this.slide(this.options.slide),this.options.pause=="hover"&&this.$element.on("mouseenter",a.proxy(this.pause,this)).on("mouseleave",a.proxy(this.cycle,this))};b.prototype={cycle:function(b){return b||(this.paused=!1),this.options.interval&&!this.paused&&(this.interval=setInterval(a.proxy(this.next,this),this.options.interval)),this},to:function(b){var c=this.$element.find(".active"),d=c.parent().children(),e=d.index(c),f=this;if(b>d.length-1||b<0)return;return this.sliding?this.$element.one("slid",function(){f.to(b)}):e==b?this.pause().cycle():this.slide(b>e?"next":"prev",a(d[b]))},pause:function(a){return a||(this.paused=!0),clearInterval(this.interval),this.interval=null,this},next:function(){if(this.sliding)return;return this.slide("next")},prev:function(){if(this.sliding)return;return this.slide("prev")},slide:function(b,c){var d=this.$element.find(".active"),e=c||d[b](),f=this.interval,g=b=="next"?"left":"right",h=b=="next"?"first":"last",i=this,j=a.Event("slide");this.sliding=!0,f&&this.pause(),e=e.length?e:this.$element.find(".item")[h]();if(e.hasClass("active"))return;if(a.support.transition&&this.$element.hasClass("slide")){this.$element.trigger(j);if(j.isDefaultPrevented())return;e.addClass(b),e[0].offsetWidth,d.addClass(g),e.addClass(g),this.$element.one(a.support.transition.end,function(){e.removeClass([b,g].join(" ")).addClass("active"),d.removeClass(["active",g].join(" 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diff --git a/inst/web/lod.html b/inst/web/lod.html
deleted file mode 100644
index 966ce1a..0000000
--- a/inst/web/lod.html
+++ /dev/null
@@ -1,198 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="utf-8">
-<title>lod. chemCal 0.1-37</title>
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
-<meta name="author" content="">
-
-<link href="css/bootstrap.css" rel="stylesheet">
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-<link href="css/highlight.css" rel="stylesheet">
-<link href="css/staticdocs.css" rel="stylesheet">
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- </head>
-
- <body>
- <div class="navbar">
- <div class="navbar-inner">
- <div class="container">
- <a class="brand" href="#">chemCal 0.1-37</a>
- <div class="nav">
- <ul class="nav">
- <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
- </ul>
- </div>
- </div>
- </div>
-</div>
-
- <div class="container">
- <header>
-
- </header>
-
- <h1>Estimate a limit of detection (LOD)</h1>
-
-<div class="row">
- <div class="span8">
- <h2>Usage</h2>
- <pre><div>lod(object, ..., alpha&nbsp;=&nbsp;0.05, beta&nbsp;=&nbsp;0.05, method&nbsp;=&nbsp;"default", tol&nbsp;=&nbsp;"default")</div></pre>
-
- <h2>Arguments</h2>
- <dl>
- <dt>object</dt>
- <dd>
- A univariate model object of class <code><a href='http://www.inside-r.org/r-doc/stats/lm'>lm</a></code> or
- <code><a href='http://www.inside-r.org/r-doc/MASS/rlm'>rlm</a></code>
- with model formula <code>y ~ x</code> or <code>y ~ x - 1</code>,
- optionally from a weighted regression.
- </dd>
- <dt>...</dt>
- <dd>
- Placeholder for further arguments that might be needed by
- future implementations.
- </dd>
- <dt>alpha</dt>
- <dd>
- The error tolerance for the decision limit (critical value).
- </dd>
- <dt>beta</dt>
- <dd>
- The error tolerance beta for the detection limit.
- </dd>
- <dt>method</dt>
- <dd>
- The &#147;default&#148; method uses a prediction interval at the LOD
- for the estimation of the LOD, which obviously requires
- iteration. This is described for example in Massart, p. 432 ff.
- The &#147;din&#148; method uses the prediction interval at
- x = 0 as an approximation.
- </dd>
- <dt>tol</dt>
- <dd>
- When the &#147;default&#148; method is used, the default tolerance
- for the LOD on the x scale is the value of the smallest non-zero standard
- divided by 1000. Can be set to a numeric value to override this.
- </dd>
- </dl>
-
- <div class="Value">
- <h2>Value</h2>
-
- <p><dl>
- A list containig the corresponding x and y values of the estimated limit of
- detection of a model used for calibration.
-</dl></p>
-
- </div>
-
- <div class="Description">
- <h2>Description</h2>
-
- <p>The decision limit (German: Nachweisgrenze) is defined as the signal or
- analyte concentration that is significantly different from the blank signal
- with a first order error alpha (one-sided significance test).
- The detection limit, or more precise, the minimum detectable value
- (German: Erfassungsgrenze), is then defined as the signal or analyte
- concentration where the probability that the signal is not detected although
- the analyte is present (type II or false negative error), is beta (also a
- one-sided significance test).</p>
-
- </div>
-
- <div class="Note">
- <h2>Note</h2>
-
- <p>- The default values for alpha and beta are the ones recommended by IUPAC.
- - The estimation of the LOD in terms of the analyte amount/concentration
- xD from the LOD in the signal domain SD is done by simply inverting the
- calibration function (i.e. assuming a known calibration function).
- - The calculation of a LOD from weighted calibration models requires
- a weights argument for the internally used <code><a href='http://www.inside-r.org/r-doc/stats/predict.lm'>predict.lm</a></code>
- function, which is currently not supported in R.</p>
-
- </div>
-
- <div class="References">
- <h2>References</h2>
-
- <p>Massart, L.M, Vandenginste, B.G.M., Buydens, L.M.C., De Jong, S., Lewi, P.J.,
- Smeyers-Verbeke, J. (1997) Handbook of Chemometrics and Qualimetrics: Part A,
- Chapter 13.7.8</p>
-
- <p>J. Inczedy, T. Lengyel, and A.M. Ure (2002) International Union of Pure and
- Applied Chemistry Compendium of Analytical Nomenclature: Definitive Rules.
- Web edition.</p>
-
- <p>Currie, L. A. (1997) Nomenclature in evaluation of analytical methods including
- detection and quantification capabilities (IUPAC Recommendations 1995).
- Analytica Chimica Acta 391, 105 - 126.</p>
-
- </div>
-
- <h2 id="examples">Examples</h2>
- <pre class="examples"><div class='input'>data(din32645)
-m &lt;- lm(y ~ x, data = din32645)
-lod(m)
-</div>
-<div class='output'>$x
-[1] 0.08655484
-
-$y
- 1
-3317.154
-
-</div>
-<div class='input'>
-# The critical value (decision limit, German Nachweisgrenze) can be obtained
-# by using beta = 0.5:
-lod(m, alpha = 0.01, beta = 0.5)
-</div>
-<div class='output'>$x
-[1] 0.0698127
-
-$y
- 1
-3155.393
-
-</div></pre>
- </div>
- <div class="span4">
- <!-- <ul>
- <li>lod</li><li>lod.lm</li><li>lod.rlm</li><li>lod.default</li>
- </ul>
- <ul>
- <li>manip</li>
- </ul> -->
-
- <h2>See also</h2>
-
- Examples for <code><a href='din32645.html'>din32645</a></code>
-
-
- </div>
-</div>
-
- <footer>
- <p class="pull-right"><a href="#">Back to top</a></p>
-<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
- </footer>
- </div>
- </body>
-</html> \ No newline at end of file
diff --git a/inst/web/loq.html b/inst/web/loq.html
deleted file mode 100644
index f628808..0000000
--- a/inst/web/loq.html
+++ /dev/null
@@ -1,189 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="utf-8">
-<title>loq. chemCal 0.1-37</title>
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
-<meta name="author" content="">
-
-<link href="css/bootstrap.css" rel="stylesheet">
-<link href="css/bootstrap-responsive.css" rel="stylesheet">
-<link href="css/highlight.css" rel="stylesheet">
-<link href="css/staticdocs.css" rel="stylesheet">
-
-<!--[if lt IE 9]>
- <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
-<![endif]-->
-
-<script type="text/x-mathjax-config">
- MathJax.Hub.Config({
- tex2jax: {
- inlineMath: [ ['$','$'], ["\\(","\\)"] ],
- processEscapes: true
- }
- });
-</script>
-<script type="text/javascript"
- src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
-</script>
- </head>
-
- <body>
- <div class="navbar">
- <div class="navbar-inner">
- <div class="container">
- <a class="brand" href="#">chemCal 0.1-37</a>
- <div class="nav">
- <ul class="nav">
- <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
- </ul>
- </div>
- </div>
- </div>
-</div>
-
- <div class="container">
- <header>
-
- </header>
-
- <h1>Estimate a limit of quantification (LOQ)</h1>
-
-<div class="row">
- <div class="span8">
- <h2>Usage</h2>
- <pre><div>loq(object, ..., alpha&nbsp;=&nbsp;0.05, k&nbsp;=&nbsp;3, n&nbsp;=&nbsp;1, w.loq&nbsp;=&nbsp;"auto", var.loq&nbsp;=&nbsp;"auto", tol&nbsp;=&nbsp;"default")</div></pre>
-
- <h2>Arguments</h2>
- <dl>
- <dt>object</dt>
- <dd>
- A univariate model object of class <code><a href='http://www.inside-r.org/r-doc/stats/lm'>lm</a></code> or
- <code><a href='http://www.inside-r.org/r-doc/MASS/rlm'>rlm</a></code>
- with model formula <code>y ~ x</code> or <code>y ~ x - 1</code>,
- optionally from a weighted regression. If weights are specified
- in the model, either <code>w.loq</code> or <code>var.loq</code> have to
- be specified.
- </dd>
- <dt>alpha</dt>
- <dd>
- The error tolerance for the prediction of x values in the calculation.
- </dd>
- <dt>...</dt>
- <dd>
- Placeholder for further arguments that might be needed by
- future implementations.
- </dd>
- <dt>k</dt>
- <dd>
- The inverse of the maximum relative error tolerated at the
- desired LOQ.
- </dd>
- <dt>n</dt>
- <dd>
- The number of replicate measurements for which the LOQ should be
- specified.
- </dd>
- <dt>w.loq</dt>
- <dd>
- The weight that should be attributed to the LOQ. Defaults
- to one for unweighted regression, and to the mean of the weights
- for weighted regression. See <code><a href='massart97ex3.html'>massart97ex3</a></code> for
- an example how to take advantage of knowledge about the
- variance function.
- </dd>
- <dt>var.loq</dt>
- <dd>
- The approximate variance at the LOQ. The default value is
- calculated from the model.
- </dd>
- <dt>tol</dt>
- <dd>
- The default tolerance for the LOQ on the x scale is the value of the
- smallest non-zero standard divided by 1000. Can be set to a
- numeric value to override this.
- </dd>
- </dl>
-
- <div class="Value">
- <h2>Value</h2>
-
- <p><dl>
- The estimated limit of quantification for a model used for calibration.
-</dl></p>
-
- </div>
-
- <div class="Description">
- <h2>Description</h2>
-
- <p>The limit of quantification is the x value, where the relative error
- of the quantification given the calibration model reaches a prespecified
- value 1/k. Thus, it is the solution of the equation
- $$L = k c(L)$$
- where c(L) is half of the length of the confidence interval at the limit L
- (DIN 32645, equivalent to ISO 11843). c(L) is internally estimated by
- <code><a href='inverse.predict.html'>inverse.predict</a></code>, and L is obtained by iteration.</p>
-
- </div>
-
- <div class="Note">
- <h2>Note</h2>
-
- <p>- IUPAC recommends to base the LOQ on the standard deviation of the signal
- where x = 0.
- - The calculation of a LOQ based on weighted regression is non-standard
- and therefore not tested. Feedback is welcome.</p>
-
- </div>
-
- <h2 id="examples">Examples</h2>
- <pre class="examples"><div class='input'>data(massart97ex3)
-attach(massart97ex3)
-m &lt;- lm(y ~ x)
-loq(m)
-</div>
-<div class='output'>$x
-[1] 13.97764
-
-$y
- 1
-30.6235
-
-</div>
-<div class='input'>
-# We can get better by using replicate measurements
-loq(m, n = 3)
-</div>
-<div class='output'>$x
-[1] 9.971963
-
-$y
- 1
-22.68539
-
-</div></pre>
- </div>
- <div class="span4">
- <!-- <ul>
- <li>loq</li><li>loq.lm</li><li>loq.rlm</li><li>loq.default</li>
- </ul>
- <ul>
- <li>manip</li>
- </ul> -->
-
- <h2>See also</h2>
-
- Examples for <code><a href='din32645.html'>din32645</a></code>
-
-
- </div>
-</div>
-
- <footer>
- <p class="pull-right"><a href="#">Back to top</a></p>
-<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
- </footer>
- </div>
- </body>
-</html> \ No newline at end of file
diff --git a/inst/web/massart97ex1.html b/inst/web/massart97ex1.html
deleted file mode 100644
index 1e1a0cd..0000000
--- a/inst/web/massart97ex1.html
+++ /dev/null
@@ -1,98 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="utf-8">
-<title>massart97ex1. chemCal 0.1-37</title>
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
-<meta name="author" content="">
-
-<link href="css/bootstrap.css" rel="stylesheet">
-<link href="css/bootstrap-responsive.css" rel="stylesheet">
-<link href="css/highlight.css" rel="stylesheet">
-<link href="css/staticdocs.css" rel="stylesheet">
-
-<!--[if lt IE 9]>
- <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
-<![endif]-->
-
-<script type="text/x-mathjax-config">
- MathJax.Hub.Config({
- tex2jax: {
- inlineMath: [ ['$','$'], ["\\(","\\)"] ],
- processEscapes: true
- }
- });
-</script>
-<script type="text/javascript"
- src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
-</script>
- </head>
-
- <body>
- <div class="navbar">
- <div class="navbar-inner">
- <div class="container">
- <a class="brand" href="#">chemCal 0.1-37</a>
- <div class="nav">
- <ul class="nav">
- <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
- </ul>
- </div>
- </div>
- </div>
-</div>
-
- <div class="container">
- <header>
-
- </header>
-
- <h1>Calibration data from Massart et al. (1997), example 1</h1>
-
-<div class="row">
- <div class="span8">
- <h2>Usage</h2>
- <pre><div>data(massart97ex1)</div></pre>
-
- <div class="Description">
- <h2>Description</h2>
-
- <p>Sample dataset from p. 175 to test the package.</p>
-
- </div>
-
- <div class="Format">
- <h2>Format</h2>
-
- <p>A dataframe containing 6 observations of x and y data.</p>
-
- </div>
-
- <div class="Source">
- <h2>Source</h2>
-
- <p>Massart, L.M, Vandenginste, B.G.M., Buydens, L.M.C., De Jong, S., Lewi, P.J.,
- Smeyers-Verbeke, J. (1997) Handbook of Chemometrics and Qualimetrics: Part A,
- Chapter 8.</p>
-
- </div>
- </div>
- <div class="span4">
- <!-- <ul>
- <li>massart97ex1</li>
- </ul>
- <ul>
- <li>datasets</li>
- </ul> -->
-
-
- </div>
-</div>
-
- <footer>
- <p class="pull-right"><a href="#">Back to top</a></p>
-<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
- </footer>
- </div>
- </body>
-</html> \ No newline at end of file
diff --git a/inst/web/massart97ex3-5.png b/inst/web/massart97ex3-5.png
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+++ /dev/null
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diff --git a/inst/web/massart97ex3.html b/inst/web/massart97ex3.html
deleted file mode 100644
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--- a/inst/web/massart97ex3.html
+++ /dev/null
@@ -1,198 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="utf-8">
-<title>massart97ex3. chemCal 0.1-37</title>
-<meta name="viewport" content="width=device-width, initial-scale=1.0">
-<meta name="author" content="">
-
-<link href="css/bootstrap.css" rel="stylesheet">
-<link href="css/bootstrap-responsive.css" rel="stylesheet">
-<link href="css/highlight.css" rel="stylesheet">
-<link href="css/staticdocs.css" rel="stylesheet">
-
-<!--[if lt IE 9]>
- <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
-<![endif]-->
-
-<script type="text/x-mathjax-config">
- MathJax.Hub.Config({
- tex2jax: {
- inlineMath: [ ['$','$'], ["\\(","\\)"] ],
- processEscapes: true
- }
- });
-</script>
-<script type="text/javascript"
- src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
-</script>
- </head>
-
- <body>
- <div class="navbar">
- <div class="navbar-inner">
- <div class="container">
- <a class="brand" href="#">chemCal 0.1-37</a>
- <div class="nav">
- <ul class="nav">
- <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
- </ul>
- </div>
- </div>
- </div>
-</div>
-
- <div class="container">
- <header>
-
- </header>
-
- <h1>Calibration data from Massart et al. (1997), example 3</h1>
-
-<div class="row">
- <div class="span8">
- <h2>Usage</h2>
- <pre><div>data(massart97ex3)</div></pre>
-
- <div class="Description">
- <h2>Description</h2>
-
- <p>Sample dataset from p. 188 to test the package.</p>
-
- </div>
-
- <div class="Format">
- <h2>Format</h2>
-
- <p>A dataframe containing 6 levels of x values with 5
- observations of y for each level.</p>
-
- </div>
-
- <div class="Source">
- <h2>Source</h2>
-
- <p>Massart, L.M, Vandenginste, B.G.M., Buydens, L.M.C., De Jong, S., Lewi, P.J.,
- Smeyers-Verbeke, J. (1997) Handbook of Chemometrics and Qualimetrics: Part A,
- Chapter 8.</p>
-
- </div>
-
- <h2 id="examples">Examples</h2>
- <pre class="examples"><div class='input'>data(massart97ex3)
-attach(massart97ex3)
-</div>
-<strong class='message'>Die folgenden Objekte sind maskiert von massart97ex3 (pos = 3):
-
- x, y
-</strong>
-<div class='input'>yx &lt;- split(y, x)
-ybar &lt;- sapply(yx, mean)
-s &lt;- round(sapply(yx, sd), digits = 2)
-w &lt;- round(1 / (s^2), digits = 3)
-weights &lt;- w[factor(x)]
-m &lt;- lm(y ~ x, w = weights)
-calplot(m)
-</div>
-<strong class='warning'>Warning message:
-Assuming constant prediction variance even though model fit is weighted
-</strong>
-<p><img src='massart97ex3-5.png' alt='' width='540' height='400' /></p>
-<div class='input'>
-# The following concords with the book p. 200
-inverse.predict(m, 15, ws = 1.67) # 5.9 +- 2.5
-</div>
-<div class='output'>$Prediction
-[1] 5.865367
-
-$`Standard Error`
-[1] 0.8926109
-
-$Confidence
-[1] 2.478285
-
-$`Confidence Limits`
-[1] 3.387082 8.343652
-
-</div>
-<div class='input'>inverse.predict(m, 90, ws = 0.145) # 44.1 +- 7.9
-</div>
-<div class='output'>$Prediction
-[1] 44.06025
-
-$`Standard Error`
-[1] 2.829162
-
-$Confidence
-[1] 7.855012
-
-$`Confidence Limits`
-[1] 36.20523 51.91526
-
-</div>
-<div class='input'>
-# The LOD is only calculated for models from unweighted regression
-# with this version of chemCal
-m0 &lt;- lm(y ~ x)
-lod(m0)
-</div>
-<div class='output'>$x
-[1] 5.407085
-
-$y
- 1
-13.63911
-
-</div>
-<div class='input'>
-# Limit of quantification from unweighted regression
-loq(m0)
-</div>
-<div class='output'>$x
-[1] 13.97764
-
-$y
- 1
-30.6235
-
-</div>
-<div class='input'>
-# For calculating the limit of quantification from a model from weighted
-# regression, we need to supply weights, internally used for inverse.predict
-# If we are not using a variance function, we can use the weight from
-# the above example as a first approximation (x = 15 is close to our
-# loq approx 14 from above).
-loq(m, w.loq = 1.67)
-</div>
-<div class='output'>$x
-[1] 7.346195
-
-$y
- 1
-17.90777
-
-</div>
-<div class='input'># The weight for the loq should therefore be derived at x = 7.3 instead
-# of 15, but the graphical procedure of Massart (p. 201) to derive the
-# variances on which the weights are based is quite inaccurate anyway.
-</div></pre>
- </div>
- <div class="span4">
- <!-- <ul>
- <li>massart97ex3</li>
- </ul>
- <ul>
- <li>datasets</li>
- </ul> -->
-
-
- </div>
-</div>
-
- <footer>
- <p class="pull-right"><a href="#">Back to top</a></p>
-<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
- </footer>
- </div>
- </body>
-</html> \ No newline at end of file
diff --git a/inst/web/vignettes/chemCal.pdf b/inst/web/vignettes/chemCal.pdf
deleted file mode 100644
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--- a/inst/web/vignettes/chemCal.pdf
+++ /dev/null
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