Make an RStudio project and improve the docs

author: Ranke Johannes <johannes.ranke@agroscope.admin.ch> 2023-11-10 18:40:34 +0100
committer: Ranke Johannes <johannes.ranke@agroscope.admin.ch> 2023-11-10 19:21:11 +0100
commit: 816de01ce642c1c3d633ffb1cbcf960036d27114 (patch)
tree: cf732b6e18bcc0864b481f804a1cb0b16bdd7d4d /docs/index.html
parent: 67384ac3c7c0b888d67d06473f81e46d520a7dd3 (diff)
1 files changed, 38 insertions, 35 deletions
diff --git a/docs/index.html b/docs/index.html
index c4ad646..f241bb6 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -16,14 +16,15 @@
     data as R objects. If Python and RDKit (&gt; 2015.03) are installed and
     configured for use with reticulate, some basic chemoinformatics functions
     like the calculation of molecular weight and plotting of chemical
-    structures in R graphics are available. For plotting, you need
-    grConvert (https://sjp.co.nz/projects/grconvert) which is not on CRAN.">
+    structures in R graphics are available.">
 <!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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 <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
 <![endif]-->
 </head>
 <body data-spy="scroll" data-target="#toc">
+    
+
     <div class="container template-home">
       <header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
   <div class="container">
@@ -36,25 +37,19 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="index.html">chents</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.3.1</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.3.1</span>
       </span>
     </div>
 
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
 <li>
-  <a href="index.html">
-    <span class="fas fa-home fa-lg"></span>
-     
-  </a>
-</li>
-<li>
   <a href="reference/index.html">Reference</a>
 </li>
       </ul>
 <ul class="nav navbar-nav navbar-right">
 <li>
-  <a href="https://github.com/jranke/chents/">
+  <a href="https://github.com/jranke/chents/" class="external-link">
     <span class="fab fa-github fa-lg"></span>
      
   </a>
@@ -71,66 +66,72 @@
 
       </header><div class="row">
   <div class="contents col-md-9">
-<div id="chents" class="section level1">
-<div class="page-header"><h1 class="hasAnchor">
-<a href="#chents" class="anchor"></a>chents</h1></div>
-
+<div class="section level1">
+<div class="page-header"><h1 id="chents">chents<a class="anchor" aria-label="anchor" href="#chents"></a>
+</h1></div>
+<p><a href="https://app.travis-ci.com/github/jranke/chents" class="external-link"><img src="https://travis-ci.com/jranke/chents.svg?branch=main" alt="Build Status"></a> <a href="https://app.codecov.io/gh/jranke/chents" class="external-link"><img src="https://codecov.io/github/jranke/chents/branch/main/graphs/badge.svg" alt="codecov"></a></p>
 <p>The R package <strong>chents</strong> provides some utilities for working with chemical entities in R.</p>
-<div id="features" class="section level2">
-<h2 class="hasAnchor">
-<a href="#features" class="anchor"></a>Features</h2>
+<div class="section level2">
+<h2 id="features">Features<a class="anchor" aria-label="anchor" href="#features"></a>
+</h2>
 <ul>
 <li>Some chemical information is retrieved from the PubChem website using the webchem package</li>
 <li>If Python and RDKit (&gt; 2015.03) are installed and configured for use with ‘reticulate’, some basic chemoinformatics functions some additional chemical information is computed and a 2D graph can be plotted</li>
 <li>Additional information can be read from a local .yaml file</li>
 </ul>
 </div>
-<div id="examples" class="section level2">
-<h2 class="hasAnchor">
-<a href="#examples" class="anchor"></a>Examples</h2>
-<p>Some examples are available from the <a href="http://pkgdown.jrwb.de/chents/reference">reference on jrwb.de</a>.</p>
+<div class="section level2">
+<h2 id="examples">Examples<a class="anchor" aria-label="anchor" href="#examples"></a>
+</h2>
+<p>Some examples are available from the <a href="https://pkgdown.jrwb.de/chents/reference" class="external-link">reference on jrwb.de</a>.</p>
 </div>
 </div>
   </div>
 
   <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
     <div class="links">
-<h2>Links</h2>
+<h2 data-toc-skip>Links</h2>
 <ul class="list-unstyled">
-<li>Browse source code at <br><a href="https://github.com/jranke/chents/">https://github.com/jranke/chents/</a>
-</li>
+<li><a href="https://github.com/jranke/chents/" class="external-link">Browse source code</a></li>
 </ul>
 </div>
+
 <div class="license">
-<h2>License</h2>
+<h2 data-toc-skip>License</h2>
 <ul class="list-unstyled">
 <li>GPL</li>
 </ul>
 </div>
-<div class="developers">
-<h2>Developers</h2>
+
+
+<div class="citation">
+<h2 data-toc-skip>Citation</h2>
 <ul class="list-unstyled">
-<li>Johannes Ranke <br><small class="roles"> Author, maintainer, copyright holder </small>  </li>
+<li><a href="authors.html#citation">Citing chents</a></li>
 </ul>
 </div>
 
-  <div class="dev-status">
-<h2>Dev status</h2>
+<div class="developers">
+<h2 data-toc-skip>Developers</h2>
 <ul class="list-unstyled">
-<li><a href="https://travis-ci.com/jranke/chents"><img src="https://travis-ci.com/jranke/chents.svg?branch=main" alt="Build Status"></a></li>
-<li><a href="https://codecov.io/github/jranke/chents"><img src="https://codecov.io/github/jranke/chents/branch/main/graphs/badge.svg" alt="codecov"></a></li>
+<li>Johannes Ranke <br><small class="roles"> Author, maintainer, copyright holder </small>  </li>
 </ul>
 </div>
-</div>
+
+
+
+  </div>
 </div>
 
 
       <footer><div class="copyright">
-  <p>Developed by Johannes Ranke.</p>
+  <p></p>
+<p>Developed by Johannes Ranke.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
+  <p></p>
+<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
 </div>
 
       </footer>
@@ -139,5 +140,7 @@
   
 
 
+  
+
   </body>
 </html>
author	Ranke Johannes <johannes.ranke@agroscope.admin.ch>	2023-11-10 18:40:34 +0100
committer	Ranke Johannes <johannes.ranke@agroscope.admin.ch>	2023-11-10 19:21:11 +0100
commit	816de01ce642c1c3d633ffb1cbcf960036d27114 (patch)
tree	cf732b6e18bcc0864b481f804a1cb0b16bdd7d4d /docs/index.html
parent	67384ac3c7c0b888d67d06473f81e46d520a7dd3 (diff)