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authorRanke Johannes <johannes.ranke@agroscope.admin.ch>2023-11-10 18:40:34 +0100
committerRanke Johannes <johannes.ranke@agroscope.admin.ch>2023-11-10 19:21:11 +0100
commit816de01ce642c1c3d633ffb1cbcf960036d27114 (patch)
treecf732b6e18bcc0864b481f804a1cb0b16bdd7d4d /docs/reference/plot.chent.html
parent67384ac3c7c0b888d67d06473f81e46d520a7dd3 (diff)
Make an RStudio project and improve the docs
Diffstat (limited to 'docs/reference/plot.chent.html')
-rw-r--r--docs/reference/plot.chent.html190
1 files changed, 62 insertions, 128 deletions
diff --git a/docs/reference/plot.chent.html b/docs/reference/plot.chent.html
index 62bf38f..470ce79 100644
--- a/docs/reference/plot.chent.html
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+<![endif]--></head><body data-spy="scroll" data-target="#toc">
+
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+ <header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
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<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
@@ -72,44 +17,31 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">chents</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.3.1</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.3.1</span>
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+ <ul class="nav navbar-nav"><li>
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- <ul class="nav navbar-nav navbar-right">
- <li>
- <a href="https://github.com/jranke/chents/">
+ </ul><ul class="nav navbar-nav navbar-right"><li>
+ <a href="https://github.com/jranke/chents/" class="external-link">
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+ </ul></div><!--/.nav-collapse -->
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+ </header><div class="row">
<div class="col-md-9 contents">
<div class="page-header">
<h1>Plot method for chent objects</h1>
- <small class="dont-index">Source: <a href='https://github.com/jranke/chents/blob/master/R/chent.R'><code>R/chent.R</code></a></small>
+ <small class="dont-index">Source: <a href="https://github.com/jranke/chents/blob/HEAD/R/chent.R" class="external-link"><code>R/chent.R</code></a></small>
<div class="hidden name"><code>plot.chent.Rd</code></div>
</div>
@@ -117,68 +49,70 @@
<p>Plot method for chent objects</p>
</div>
- <pre class="usage"><span class='co'># S3 method for chent</span>
-<span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span><span class='va'>x</span>, <span class='va'>...</span><span class='op'>)</span></pre>
-
- <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
- <table class="ref-arguments">
- <colgroup><col class="name" /><col class="desc" /></colgroup>
- <tr>
- <th>x</th>
- <td><p>The chent object to be plotted</p></td>
- </tr>
- <tr>
- <th>...</th>
- <td><p>Further arguments passed to <code>grid.picture</code></p></td>
- </tr>
- </table>
-
-
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='va'>caffeine</span> <span class='op'>&lt;-</span> <span class='va'><a href='chent.html'>chent</a></span><span class='op'>$</span><span class='fu'>new</span><span class='op'>(</span><span class='st'>"caffeine"</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; <span class='message'>PubChem:</span></div><div class='output co'>#&gt; <span class='message'>Trying to get chemical information from RDKit using PubChem_Canonical SMILES</span>
-#&gt; <span class='message'>CN1C=NC2=C1C(=O)N(C(=O)N2C)C</span></div><div class='output co'>#&gt; <span class='message'>Did not find chyaml file ./caffeine.yaml</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>caffeine</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; &lt;chent&gt;
-#&gt; Identifier $identifier caffeine
-#&gt; InChI Key $inchikey RYYVLZVUVIJVGH-UHFFFAOYSA-N
-#&gt; SMILES string $smiles:
-#&gt; PubChem_Canonical
-#&gt; "CN1C=NC2=C1C(=O)N(C(=O)N2C)C"
-#&gt; Molecular weight $mw: 194.2
-#&gt; PubChem synonyms (up to 10):
-#&gt; [1] "caffeine" "58-08-2"
-#&gt; [3] "1,3,7-Trimethylxanthine" "Guaranine"
-#&gt; [5] "Thein" "Methyltheobromine"
-#&gt; [7] "Cafeina" "Theine"
-#&gt; [9] "Koffein" "Mateina" </div><div class='input'><span class='kw'>if</span> <span class='op'>(</span><span class='op'>!</span><span class='fu'><a href='https://rdrr.io/r/base/NULL.html'>is.null</a></span><span class='op'>(</span><span class='va'>caffeine</span><span class='op'>$</span><span class='va'>Picture</span><span class='op'>)</span><span class='op'>)</span> <span class='op'>{</span>
- <span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span><span class='va'>caffeine</span><span class='op'>)</span>
-<span class='op'>}</span>
-</div><div class='img'><img src='plot.chent-1.png' alt='' width='700' height='433' /></div></pre>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for chent</span></span>
+<span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
+ </div>
+
+ <div id="arguments">
+ <h2>Arguments</h2>
+ <dl><dt>x</dt>
+<dd><p>The chent object to be plotted</p></dd>
+
+
+<dt>...</dt>
+<dd><p>Further arguments passed to <code>grid.picture</code></p></dd>
+
+</dl></div>
+
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">caffeine</span> <span class="op">&lt;-</span> <span class="va"><a href="chent.html">chent</a></span><span class="op">$</span><span class="fu">new</span><span class="op">(</span><span class="st">"caffeine"</span><span class="op">)</span></span></span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> PubChem:</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Trying to get chemical information from RDKit using PubChem_Canonical SMILES</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> CN1C=NC2=C1C(=O)N(C(=O)N2C)C</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Did not find chyaml file ./caffeine.yaml</span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">caffeine</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;chent&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Identifier $identifier caffeine </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> InChI Key $inchikey RYYVLZVUVIJVGH-UHFFFAOYSA-N </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> SMILES string $smiles:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> PubChem_Canonical </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> "CN1C=NC2=C1C(=O)N(C(=O)N2C)C" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Molecular weight $mw: 194.2 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> PubChem synonyms (up to 10):</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "caffeine" "58-08-2" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [3] "Guaranine" "1,3,7-Trimethylxanthine"</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "Methyltheobromine" "Theine" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "Thein" "Cafeina" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [9] "Koffein" "Mateina" </span>
+<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="op">!</span><span class="fu"><a href="https://rdrr.io/r/base/NULL.html" class="external-link">is.null</a></span><span class="op">(</span><span class="va">caffeine</span><span class="op">$</span><span class="va">Picture</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
+<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">caffeine</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="op">}</span></span></span>
+<span class="r-plt img"><img src="plot.chent-1.png" alt="" width="700" height="433"></span>
+</code></pre></div>
+ </div>
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