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authorJohannes Ranke <jranke@uni-bremen.de>2019-02-19 17:17:48 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2019-02-19 17:17:48 +0100
commitaa80ce4f46f9ff1a2851ba9ba873a55a8f6ebc6d (patch)
treeaaada84eb433c5323161a3a5e60e9462b3047fe2 /docs/reference/plot.chent.html
parentf21038189af44e9dcea8458a66ce00bbf9b6b570 (diff)
Change package URL to github to get source code links
Diffstat (limited to 'docs/reference/plot.chent.html')
-rw-r--r--docs/reference/plot.chent.html68
1 files changed, 46 insertions, 22 deletions
diff --git a/docs/reference/plot.chent.html b/docs/reference/plot.chent.html
index cc3b96b..cde7a87 100644
--- a/docs/reference/plot.chent.html
+++ b/docs/reference/plot.chent.html
@@ -1,6 +1,6 @@
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@@ -9,30 +9,37 @@
<title>Plot method for chent objects — plot.chent • chents</title>
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@@ -48,13 +55,18 @@
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- <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
+ <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
+ <span class="sr-only">Toggle navigation</span>
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</button>
- <a class="navbar-brand" href="../index.html">chents</a>
+ <span class="navbar-brand">
+ <a class="navbar-link" href="../index.html">chents</a>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.2.6</span>
+ </span>
</div>
+
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<ul class="nav navbar-nav">
<li>
@@ -69,8 +81,14 @@
</ul>
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-
+ <li>
+ <a href="https://github.com/jranke/chents">
+ <span class="fa fa-github fa-lg"></span>
+
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+</li>
</ul>
+
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
@@ -78,20 +96,24 @@
</header>
- <div class="row">
+<div class="row">
<div class="col-md-9 contents">
<div class="page-header">
<h1>Plot method for chent objects</h1>
+ <small class="dont-index">Source: <a href='https://github.com/jranke/chents/blob/master/R/chent.R'><code>R/chent.R</code></a></small>
+ <div class="hidden name"><code>plot.chent.Rd</code></div>
</div>
+ <div class="ref-description">
<p>Plot method for chent objects</p>
+ </div>
<pre class="usage"><span class='co'># S3 method for chent</span>
-<span class='fu'>plot</span>(<span class='no'>x</span>, <span class='no'>...</span>)</pre>
+<span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>x</span>, <span class='no'>...</span>)</pre>
- <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+ <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
@@ -107,7 +129,7 @@
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'><span class='no'>caffeine</span> <span class='kw'>&lt;-</span> <span class='no'>chent</span>$<span class='fu'>new</span>(<span class='st'>"caffeine"</span>)</div><div class='output co'>#&gt; <span class='message'>PubChem:</span></div><div class='output co'>#&gt; <span class='message'>https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/name/cids/JSON</span></div><div class='output co'>#&gt; <span class='message'>https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/property/MolecularFormula,MolecularWeight,CanonicalSMILES,IsomericSMILES,InChI,InChIKey,IUPACName,XLogP,TPSA,Complexity,Charge,HBondDonorCount,HBondAcceptorCount/JSON</span></div><div class='output co'>#&gt; <span class='message'>https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/synonyms/JSON</span></div><div class='output co'>#&gt; <span class='message'>Trying to get chemical information from RDKit using PubChem_Canonical SMILES</span>
-#&gt; <span class='message'>CN1C=NC2=C1C(=O)N(C(=O)N2C)C</span></div><div class='output co'>#&gt; <span class='message'>Did not find chyaml file ./caffeine.yaml</span></div><div class='input'><span class='fu'>print</span>(<span class='no'>caffeine</span>)</div><div class='output co'>#&gt; &lt;chent&gt;
+#&gt; <span class='message'>CN1C=NC2=C1C(=O)N(C(=O)N2C)C</span></div><div class='output co'>#&gt; <span class='message'>Did not find chyaml file ./caffeine.yaml</span></div><div class='input'><span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='no'>caffeine</span>)</div><div class='output co'>#&gt; &lt;chent&gt;
#&gt; Identifier $identifier caffeine
#&gt; InChI Key $inchikey RYYVLZVUVIJVGH-UHFFFAOYSA-N
#&gt; SMILES string $smiles:
@@ -116,10 +138,10 @@
#&gt; Molecular weight $mw: 194.2
#&gt; PubChem synonyms (up to 10):
#&gt; [1] "2519" "caffeine"
-#&gt; [3] "1,3,7-Trimethylxanthine" "58-08-2"
-#&gt; [5] "Guaranine" "Thein"
+#&gt; [3] "58-08-2" "Guaranine"
+#&gt; [5] "1,3,7-Trimethylxanthine" "Thein"
#&gt; [7] "Cafeina" "Methyltheobromine"
-#&gt; [9] "Koffein" "Mateina" </div><div class='input'><span class='fu'>plot</span>(<span class='no'>caffeine</span>)</div><div class='img'><img src='plot.chent-1.png' alt='' width='700' height='432.632880098887' /></div></pre>
+#&gt; [9] "Koffein" "Mateina" </div><div class='input'><span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>caffeine</span>)</div><div class='img'><img src='plot.chent-1.png' alt='' width='700' height='433' /></div></pre>
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@@ -138,11 +160,13 @@
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