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authorJohannes Ranke <jranke@uni-bremen.de>2023-11-12 22:22:30 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2023-11-12 22:22:30 +0100
commite92727f871c2c8217251e34e52438f18c5f013bb (patch)
treeb6fd0c200d41cf5339e8e36a06d6b4d0c72daa3a /docs/reference/plot.chent.html
parent9828b97fb946104f15e537fc6a53653f1bceb27d (diff)
Import URLencode from utils, rebuild docs
This was caught by pkgdown apparently not loading the utils package by default.
Diffstat (limited to 'docs/reference/plot.chent.html')
-rw-r--r--docs/reference/plot.chent.html18
1 files changed, 15 insertions, 3 deletions
diff --git a/docs/reference/plot.chent.html b/docs/reference/plot.chent.html
index 1a07967..8d4c41e 100644
--- a/docs/reference/plot.chent.html
+++ b/docs/reference/plot.chent.html
@@ -69,13 +69,25 @@
<span class="r-msg co"><span class="r-pr">#&gt;</span> PubChem:</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Trying to get chemical information from RDKit using PubChem_Canonical SMILES</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> CN1C=NC2=C1C(=O)N(C(=O)N2C)C</span>
-<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in URLencode(self$identifier):</span> could not find function "URLencode"</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Did not find chyaml file ./caffeine.yaml</span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">caffeine</span><span class="op">)</span></span></span>
-<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'caffeine' not found</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;chent&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Identifier $identifier caffeine </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> InChI Key $inchikey RYYVLZVUVIJVGH-UHFFFAOYSA-N </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> SMILES string $smiles:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> PubChem_Canonical </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> "CN1C=NC2=C1C(=O)N(C(=O)N2C)C" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Molecular weight $mw: 194.2 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> PubChem synonyms (up to 10):</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "caffeine" "58-08-2" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [3] "Guaranine" "1,3,7-Trimethylxanthine"</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "Methyltheobromine" "Theine" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [7] "Thein" "Cafeina" </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [9] "Koffein" "Mateina" </span>
<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="op">!</span><span class="fu"><a href="https://rdrr.io/r/base/NULL.html" class="external-link">is.null</a></span><span class="op">(</span><span class="va">caffeine</span><span class="op">$</span><span class="va">Picture</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">caffeine</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="op">}</span></span></span>
-<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'caffeine' not found</span>
+<span class="r-plt img"><img src="plot.chent-1.png" alt="" width="700" height="433"></span>
</code></pre></div>
</div>
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