summaryrefslogtreecommitdiff
path: root/tests/testthat/test_pai.R
blob: 9d73b58c7fdf0c5691633897d256da47672b28b3 (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
test_that("a pai object is correctly generated", {

  {glyphosate <- pai$new("glyphosate", rdkit = FALSE)} |> 
    expect_message("Querying BCPC for glyphosate") |> 
    expect_message("Querying PubChem for inchikey ")
  
  # Check BCPC results
  expect_equal(glyphosate$bcpc$cas, "1071-83-6")
  expect_equal(glyphosate$bcpc$formula, "C3H8NO5P")
  expect_equal(glyphosate$bcpc$iupac_name, "N-(phosphonomethyl)glycine")
  
  expect_equal(names(glyphosate$identifier), "glyphosate")

  # Check PubChem results
  ik = "XDDAORKBJWWYJS-UHFFFAOYSA-N"
  expect_equal(glyphosate$inchikey, structure("XDDAORKBJWWYJS-UHFFFAOYSA-N", source = c("bcpc", "pubchem")))
  expect_equal(round(glyphosate$mw, 2), structure(169.07, source = "pubchem"))
  expect_equal(glyphosate$smiles[["PubChem"]], "C(C(=O)O)NCP(=O)(O)O")
})

Contact - Imprint