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# vim: foldmethod=marker ts=4 sw=4
# editor {{{
# Prefer neovim over vim over vi
if [ -e /usr/bin/nvim ]
then
EDITOR=/usr/bin/nvim
else
if [ -e /usr/bin/vim ]
then
EDITOR=/usr/bin/vim
else
EDITOR=/usr/bin/vi
fi
fi
# }}}
# R {{{
# littler scripts distributed with the littler package
PATH=/usr/local/lib/R/site-library/littler/examples:"${PATH}"
PATH=/usr/lib/R/site-library/littler/examples:"${PATH}"
# Go back
# RPython
#export RPYTHON_PYTHON_VERSION=3
# python3-uno from RPython
#PATH=/usr/lib/libreoffice/program:"${PATH}"
alias tarxz='tar --use-compress-program=pxz -c -v -f'
# Path where the R sources are
export RTOP=~/svn/R
# }}}
# debian {{{
export DEBEMAIL=jranke@uni-bremen.de
export DEBFULLNAME="Johannes Ranke"
# }}}
# rdkit {{{
# RDKIT (commented out on 2015-10-02 as I am using the Debian package python-rdkit
#export PYTHONPATH="${PYTHONPATH}:$RDBASE:$HOME/ariance/aeras/libreoffice:$HOME/py"
# commented back in as switching to LibreOffice 5 from backports makes using python3 necessary
# The cmake command I used to try to build rdkit on stretch (2018-03-01) was
# cmake -D PYTHON_LIBRARY=/usr/lib/python3.5/config-3.5m-x86_64-linux-gnu/libpython3.5m.a -D PYTHON_INCLUDE_DIR=/usr/include/python3.5/ -D PYTHON_EXECUTABLE=/usr/bin/python3 -DRDK_BUILD_INCHI_SUPPORT=ON ..
# However, then I get bitten by https://gitlab.kitware.com/cmake/cmake/issues/16391 which is unresolved
# Therefore, as I do not want to compile boost from source for now, go back to python2.7 and comment the following again...
#export RDBASE="$HOME/git/rdkit"
#export LD_LIBRARY_PATH="$RDBASE/lib"
#export PYTHONPATH="${PYTHONPATH}:$RDBASE"
# }}}
# prompt {{{
force_color_prompt=yes
# identify the current chroot
if [ -z "$debian_chroot" ] && [ -r /etc/debian_chroot ]; then
debian_chroot=$(cat /etc/debian_chroot)
fi
if [ -n "$force_color_prompt" ]; then
if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
# We have color support; assume it's compliant with Ecma-48
# (ISO/IEC-6429). (Lack of such support is extremely rare, and such
# a case would tend to support setf rather than setaf.)
color_prompt=yes
else
color_prompt=
fi
fi
source ~/.git-prompt.sh
if [ "$color_prompt" = yes ]; then
PS1="${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$(__git_ps1)\$ "
else
PS1="${debian_chroot:+($debian_chroot)}\u@\h:\w\$(__git_ps1)\$ "
fi
unset color_prompt force_color_prompt
# }}}
# history {{{
# See bash(1) for more options
HISTCONTROL=ignoredups:ignorespace
shopt -s histappend
HISTSIZE=1000
HISTFILESIZE=2000
# }}}
# ls, dir and grep {{{
# enable color support of ls and also add handy aliases
if [ -x /usr/bin/dircolors ]; then
test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
alias ls='ls --color=auto'
alias dir='dir --color=auto'
alias vdir='vdir --color=auto'
alias grep='grep --color=auto'
alias fgrep='fgrep --color=auto'
alias egrep='egrep --color=auto'
fi
# some more ls aliases
alias ll='ls -alF'
alias la='ls -A'
alias l='ls -CF'
alias lh='ls -lh'
# }}}
# alert {{{
# Add an "alert" alias for long running commands. Use like so:
# sleep 10; alert
alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
# }}}
# bash completion {{{
# enable programmable completion features (you don't need to enable
# this, if it's already enabled in /etc/bash.bashrc and /etc/profile
# sources /etc/bash.bashrc).
if [ -f /etc/bash_completion ] && ! shopt -oq posix; then
. /etc/bash_completion
fi
# }}}
# {{{varia
# check the window size after each command and, if necessary,
# update the values of LINES and COLUMNS.
shopt -s checkwinsize
# make less more friendly for non-text input files, see lesspipe(1)
[ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"
# }}}
# {{{ PATH again
PATH=~/.local/bin:"${PATH}"
# }}}
export EDITOR PATH
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