aboutsummaryrefslogblamecommitdiff
path: root/docs/reference/checkcontrols.html
blob: 30baaed375e8e77e3cc5662815bdc1fa6ead5c9f (plain) (tree)



















                                                                                                                                                                                                                      

                                                                                                                                                                                                              
 


                                                                                                                                                                                         

                                             
                                     


 
                                                                                                           
 


                                                                                                           


 
                
                                                                                                  



















                                                                                                         

                                                             
                                                                                                                             
             
          
 


                                                      





                                          






                                                 
      






                                
                 


                                                               

                                                                

          
                                 



                                                                         
          
 

                                                                                                                                                                                                                                  

                                                                                                                                                                                                         

                                                                                                                                                                                                                                                           
                                                                                               


















                                                                                                    









                                                                              
                       
                                                                  







                                                                                       

                                                                                     









                                                                                            


                                                                 












                                                         

                                                                









                                     
                                                                         




               

  

         
 
<!-- Generated by pkgdown: do not edit by hand -->
<!DOCTYPE html>
<html>
  <head>
  <meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>Check raw data from range of plates or experiments — checkcontrols • drfit</title>

<!-- jquery -->
<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script>
<!-- Bootstrap -->

<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>

<!-- Font Awesome icons -->
<link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">

<!-- clipboard.js -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>

<!-- sticky kit -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>

<!-- pkgdown -->
<link href="../pkgdown.css" rel="stylesheet">
<script src="../pkgdown.js"></script>



<meta property="og:title" content="Check raw data from range of plates or experiments — checkcontrols" />

<meta property="og:description" content="Report control data from a specified range of microtiter plates or
  experiments from a specified database." />
<meta name="twitter:card" content="summary" />



<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>

<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->


  </head>

  <body>
    <div class="container template-reference-topic">
      <header>
      <div class="navbar navbar-default navbar-fixed-top" role="navigation">
  <div class="container">
    <div class="navbar-header">
      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
      </button>
      <span class="navbar-brand">
        <a class="navbar-link" href="../index.html">drfit</a>
        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.2</span>
      </span>
    </div>

    <div id="navbar" class="navbar-collapse collapse">
      <ul class="nav navbar-nav">
        <li>
  <a href="../index.html">
    <span class="fa fa-home fa-lg"></span>
     
  </a>
</li>
<li>
  <a href="../reference/index.html">Reference</a>
</li>
      </ul>
      
      <ul class="nav navbar-nav navbar-right">
        
      </ul>
      
    </div><!--/.nav-collapse -->
  </div><!--/.container -->
</div><!--/.navbar -->

      
      </header>

<div class="row">
  <div class="col-md-9 contents">
    <div class="page-header">
    <h1>Check raw data from range of plates or experiments</h1>
    
    <div class="hidden name"><code>checkcontrols.Rd</code></div>
    </div>

    <div class="ref-description">
    
    <p>Report control data from a specified range of microtiter plates or
  experiments from a specified database.</p>
    
    </div>

    <pre class="usage"><span class='fu'>checkcontrols</span>(<span class='kw'>last</span> <span class='kw'>=</span> <span class='fl'>10</span>, <span class='kw'>id</span> <span class='kw'>=</span> <span class='kw'>NULL</span>,
                <span class='kw'>db</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"cytotox"</span>, <span class='st'>"enzymes"</span>, <span class='st'>"ecotox"</span>),
                <span class='kw'>celltype</span> <span class='kw'>=</span> <span class='st'>"IPC-81"</span>, <span class='kw'>enzymetype</span> <span class='kw'>=</span> <span class='st'>"AChE"</span>,
                <span class='kw'>organism</span> <span class='kw'>=</span> <span class='st'>"Vibrio fischeri"</span>,
                <span class='kw'>endpoint</span> <span class='kw'>=</span> <span class='st'>"%"</span>, <span class='kw'>qcc</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"R"</span>, <span class='st'>"xbar"</span>))</pre>
    
    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <table class="ref-arguments">
    <colgroup><col class="name" /><col class="desc" /></colgroup>
    <tr>
      <th>last</th>
      <td><p>If <code>id</code> is not specified, this argument specifies the number of
    plates/experiments that should be evaluated. The plates/experiments with
    the hightest numbers are selected.</p></td>
    </tr>
    <tr>
      <th>id</th>
      <td><p>A numeric vector of integers, specifying the plates or experiments explicitly.</p></td>
    </tr>
    <tr>
      <th>db</th>
      <td><p>The database to be used. Currently, the microtiter plate databases
    "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are
    supported, as well as the database of ecotoxicity experiments "ecotox".</p></td>
    </tr>
    <tr>
      <th>celltype</th>
      <td><p>Only important if database "cytotox" is used.  Data for
    "IPC-81", "C6", "NB4", "HeLa", "Jurkat" and "U937" are available.</p></td>
    </tr>
    <tr>
      <th>enzymetype</th>
      <td><p>Only important if database "enzymes" is used.
    Data for "AChE", "GR" and "GST" are available.</p></td>
    </tr>
    <tr>
      <th>organism</th>
      <td><p>Only important if database "ecotox" is used.</p></td>
    </tr>
    <tr>
      <th>endpoint</th>
      <td><p>The endpoint that should be used for selecting the data. Only important if
    the database "ecotox" is used. Defaults to "%".</p></td>
    </tr>
    <tr>
      <th>qcc</th>
      <td><p>The type of quality control charts to be plotted. By default, an R chart
    (showing ranges of control values within plates/experiments), and an
    xbar chart (showing means) are generated.</p></td>
    </tr>
    </table>
    
    <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>

    <p>The function lists a report and shows two graphs.</p>
    

    <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
    <pre class="examples"><span class='co'># NOT RUN {</span>
<span class='fu'>checkcontrols</span>(<span class='fl'>15</span>)
<span class='co'># }</span></pre>
  </div>
  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
    <h2>Contents</h2>
    <ul class="nav nav-pills nav-stacked">
      <li><a href="#arguments">Arguments</a></li>
      
      <li><a href="#value">Value</a></li>
      
      <li><a href="#examples">Examples</a></li>
    </ul>

    <h2>Author</h2>
    
  Johannes Ranke
  <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>

  </div>
</div>

      <footer>
      <div class="copyright">
  <p>Developed by Johannes Ranke.</p>
</div>

<div class="pkgdown">
  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
</div>

      </footer>
   </div>

  

  </body>
</html>

Contact - Imprint