Static documentation rebuilt using current pkgdown

20 files changed, 494 insertions, 106 deletions

diff --git a/docs/authors.html b/docs/authors.html
index f5e3a8f..3734d36 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -18,12 +18,16 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="pkgdown.css" rel="stylesheet">
 <script src="jquery.sticky-kit.min.js"></script>
 <script src="pkgdown.js"></script>
-
+  
+  
+<meta property="og:title" content="Authors" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +55,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="reference/index.html">Reference</a>
 </li>
       </ul>
@@ -73,7 +83,7 @@
 
     <ul class="list-unstyled">
       <li>
-        <p><strong>Johannes Ranke</strong>. Author, maintainer.
+        <p><strong>Johannes Ranke</strong>. Author, maintainer. <a href='https://orcid.org/0000-0003-4371-6538' target='orcid.widget'><img src='https://members.orcid.org/sites/default/files/vector_iD_icon.svg' class='orcid'></a>
         </p>
       </li>
     </ul>
@@ -89,7 +99,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/index.html b/docs/index.html
index c29a291..d13a554 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -8,8 +8,22 @@
 <title>Dose-Response Data Evaluation • drfit</title>
 <!-- jquery --><script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
 <script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script><!-- Font Awesome icons --><link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
-<!-- pkgdown --><link href="pkgdown.css" rel="stylesheet">
-<script src="jquery.sticky-kit.min.js"></script><script src="pkgdown.js"></script><!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
+<!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script><!-- pkgdown --><link href="pkgdown.css" rel="stylesheet">
+<script src="jquery.sticky-kit.min.js"></script><script src="pkgdown.js"></script><meta property="og:title" content="Dose-Response Data Evaluation">
+<meta property="og:description" content="A somewhat outdated package of basic and easy-to-use functions for
+  fitting dose-response curves to continuous dose-response data, calculating some
+  toxicological parameters and plotting the results. Please consider using
+  the more powerful and actively developed 'drc' package.  Functions that are
+  fitted are the cumulative density function of the log-normal distribution
+  ('probit' fit), of the logistic distribution ('logit' fit), of the Weibull
+  distribution ('weibull' fit) and a linear-logistic model ('linlogit' fit),
+  derived from the latter, which is used to describe data showing stimulation at
+  low doses (hormesis). In addition, functions checking, plotting and retrieving
+  dose-response data retrieved from a database accessed via 'RODBC' are included.
+  As an alternative to the original fitting methods, the algorithms from the 'drc'
+  package can be used.">
+<meta name="twitter:card" content="summary">
+<!-- mathjax --><script src="https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><!--[if lt IE 9]>
 <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
 <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
 <![endif]-->
@@ -29,6 +43,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
 <li>
+  <a href="index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="reference/index.html">Reference</a>
 </li>
       </ul>
@@ -43,18 +63,12 @@
       
       </header><div class="row">
   <div class="contents col-md-9">
-    A somewhat outdated package of basic and easy-to-use functions for
-  fitting dose-response curves to continuous dose-response data, calculating some
-  toxicological parameters and plotting the results. Please consider using
-  the more powerful and actively developed 'drc' package.  Functions that are
-  fitted are the cumulative density function of the log-normal distribution
-  ('probit' fit), of the logistic distribution ('logit' fit), of the Weibull
-  distribution ('weibull' fit) and a linear-logistic model ('linlogit' fit),
-  derived from the latter, which is used to describe data showing stimulation at
-  low doses (hormesis). In addition, functions checking, plotting and retrieving
-  dose-response data retrieved from a database accessed via 'RODBC' are included.
-  As an alternative to the original fitting methods, the algorithms from the 'drc'
-  package can be used.
+    <div id="drfit" class="section level1">
+<div class="page-header"><h1 class="hasAnchor">
+<a href="#drfit" class="anchor"></a>drfit</h1></div>
+
+<p>Static documentation of this R package can be found at <a href="https://pkgdown.jrwb.de/drfit" class="uri">https://pkgdown.jrwb.de/drfit</a></p>
+</div>
   </div>
 
   <div class="col-md-3" id="sidebar">
@@ -67,7 +81,11 @@
 <p>GPL (&gt;= 2)</p>
 <h2>Developers</h2>
 <ul class="list-unstyled">
-<li>Johannes Ranke <br><small class="roles"> Author, maintainer </small> </li>
+<li>Johannes Ranke <br><small class="roles"> Author, maintainer </small> <a href="https://orcid.org/0000-0003-4371-6538" target="orcid.widget"><img src="https://members.orcid.org/sites/default/files/vector_iD_icon.svg" class="orcid"></a> </li>
+</ul>
+<h2>Dev status</h2>
+<ul class="list-unstyled">
+<li><a href="https://cran.r-project.org/package=drfit"><img src="https://www.r-pkg.org/badges/version/drfit"></a></li>
 </ul>
 </div>
 </div>
@@ -78,7 +96,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/pkgdown.css b/docs/pkgdown.css
index 9c437c7..181fe63 100644
--- a/docs/pkgdown.css
+++ b/docs/pkgdown.css
@@ -34,6 +34,10 @@ img.icon {
   float: right;
 }
 
+img {
+  max-width: 100%;
+}
+
 /* Section anchors ---------------------------------*/
 
 a.anchor {
@@ -96,6 +100,11 @@ a.anchor {
   margin-bottom: 0.5em;
 }
 
+.orcid {
+  height: 16px;
+  vertical-align: middle;
+}
+
 /* Reference index & topics ----------------------------------------------- */
 
 .ref-index th {font-weight: normal;}
@@ -133,15 +142,30 @@ pre, code {
   color: #333;
 }
 
-pre img {
+pre code {
+  overflow: auto;
+  word-wrap: normal;
+  white-space: pre;
+}
+
+pre .img {
+  margin: 5px 0;
+}
+
+pre .img img {
   background-color: #fff;
   display: block;
+  height: auto;
 }
 
 code a, pre a {
   color: #375f84;
 }
 
+a.sourceLine:hover {
+  text-decoration: none;
+}
+
 .fl      {color: #1514b5;}
 .fu      {color: #000000;} /* function */
 .ch,.st  {color: #036a07;} /* string */
@@ -152,3 +176,19 @@ code a, pre a {
 .error   { color: orange;  font-weight: bolder;}
 .warning { color: #6A0366; font-weight: bolder;}
 
+/* Clipboard --------------------------*/
+
+.hasCopyButton {
+  position: relative;
+}
+
+.btn-copy-ex {
+  position: absolute;
+  right: 0;
+  top: 0;
+  visibility: hidden;
+}
+
+.hasCopyButton:hover button.btn-copy-ex {
+  visibility: visible;
+}
diff --git a/docs/pkgdown.js b/docs/pkgdown.js
index c8b38c4..64b20df 100644
--- a/docs/pkgdown.js
+++ b/docs/pkgdown.js
@@ -1,8 +1,94 @@
 $(function() {
-  $("#sidebar").stick_in_parent({offset_top: 40});
+
+  $("#sidebar")
+    .stick_in_parent({offset_top: 40})
+    .on('sticky_kit:bottom', function(e) {
+      $(this).parent().css('position', 'static');
+    })
+    .on('sticky_kit:unbottom', function(e) {
+      $(this).parent().css('position', 'relative');
+    });
+
   $('body').scrollspy({
     target: '#sidebar',
     offset: 60
   });
 
+  var cur_path = paths(location.pathname);
+  $("#navbar ul li a").each(function(index, value) {
+    if (value.text == "Home")
+      return;
+    if (value.getAttribute("href") === "#")
+      return;
+
+    var path = paths(value.pathname);
+    if (is_prefix(cur_path, path)) {
+      // Add class to parent <li>, and enclosing <li> if in dropdown
+      var menu_anchor = $(value);
+      menu_anchor.parent().addClass("active");
+      menu_anchor.closest("li.dropdown").addClass("active");
+    }
+  });
 });
+
+function paths(pathname) {
+  var pieces = pathname.split("/");
+  pieces.shift(); // always starts with /
+
+  var end = pieces[pieces.length - 1];
+  if (end === "index.html" || end === "")
+    pieces.pop();
+  return(pieces);
+}
+
+function is_prefix(needle, haystack) {
+  if (needle.length > haystack.lengh)
+    return(false);
+
+  for (var i = 0; i < haystack.length; i++) {
+    if (needle[i] != haystack[i])
+      return(false);
+  }
+
+  return(true);
+}
+
+/* Clipboard --------------------------*/
+
+function changeTooltipMessage(element, msg) {
+  var tooltipOriginalTitle=element.getAttribute('data-original-title');
+  element.setAttribute('data-original-title', msg);
+  $(element).tooltip('show');
+  element.setAttribute('data-original-title', tooltipOriginalTitle);
+}
+
+if(Clipboard.isSupported()) {
+  $(document).ready(function() {
+    var copyButton = "<button type='button' class='btn btn-primary btn-copy-ex' type = 'submit' title='Copy to clipboard' aria-hidden='true' data-toggle='tooltip' data-placement='left auto' data-trigger='hover' data-clipboard-copy><i class='fa fa-copy' aria-hidden='true'></i></button>";
+
+    $(".examples").addClass("hasCopyButton");
+
+    // Insert copy buttons:
+    $(copyButton).prependTo(".hasCopyButton");
+
+    // Initialize tooltips:
+    $('.btn-copy-ex').tooltip({container: 'body'});
+
+    // Initialize clipboard:
+    var clipboardBtnCopies = new Clipboard('[data-clipboard-copy]', {
+      text: function(trigger) {
+        return trigger.parentNode.textContent;
+      }
+    });
+
+    clipboardBtnCopies.on('success', function(e) {
+      changeTooltipMessage(e.trigger, 'Copied!');
+      e.clearSelection();
+    });
+
+    clipboardBtnCopies.on('error', function() {
+      changeTooltipMessage(e.trigger,'Press Ctrl+C or Command+C to copy');
+    });
+  });
+}
+
diff --git a/docs/reference/IM1xIPC81.html b/docs/reference/IM1xIPC81.html
index 6fe9bec..2800440 100644
--- a/docs/reference/IM1xIPC81.html
+++ b/docs/reference/IM1xIPC81.html
@@ -18,12 +18,28 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in IPC-81 cells — IM1xIPC81" />
 
+<meta property="og:description" content="This is the raw data documenting the influence of the alkyl
+  chain length in 3 position on the toxicity to the
+  promyelocytic leukemia rat cell line IPC-81. The substances
+  are named according to the UFT naming scheme of these
+  substances. IM13 BF4 means 1-methyl-3-propylimidazolium
+  tetrafluoroborate, IM14 BF4 means
+  1-methyl-3-butylimidazolium tetrafluoroborate and IM1-10
+  BF4 means 1-methyl-3-decylimidazolium tetrafluoroborate.
+  This is a subset (only the BF4 anion) of the data
+  shown in Figure 3 in Ranke et al. (2004)." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +67,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -89,7 +111,7 @@
     <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
 
     <p>A dataframe containing the data as required for the
-  <code><a href='drfit.html'>drfit</a></code> function. An additional column contains
+  <code>drfit</code> function. An additional column contains
   the tested organism (name of the cell line).</p>
     
     <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
@@ -103,7 +125,7 @@
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'>  <span class='no'>rIM1xIPC81</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drfit.html'>drfit</a></span>(<span class='no'>IM1xIPC81</span>, <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fl'>10</span>)</div><div class='output co'>#&gt; <span class='message'></span>
+    <pre class="examples"><div class='input'>  <span class='no'>rIM1xIPC81</span> <span class='kw'>&lt;-</span> <span class='fu'>drfit</span>(<span class='no'>IM1xIPC81</span>, <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fl'>10</span>)</div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM13 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM14 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM15 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
@@ -112,7 +134,7 @@
 #&gt; <span class='message'>IM18 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM19 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM1-10 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='input'>
-  <span class='no'>rIM1xIPC81.drc</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drcfit.html'>drcfit</a></span>(<span class='no'>IM1xIPC81</span>, <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fl'>10</span>)</div><div class='output co'>#&gt; <span class='message'></span>
+  <span class='no'>rIM1xIPC81.drc</span> <span class='kw'>&lt;-</span> <span class='fu'>drcfit</span>(<span class='no'>IM1xIPC81</span>, <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fl'>10</span>)</div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM13 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM14 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM15 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
@@ -186,7 +208,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/IM1xVibrio.html b/docs/reference/IM1xVibrio.html
index 9cee125..22ab40e 100644
--- a/docs/reference/IM1xVibrio.html
+++ b/docs/reference/IM1xVibrio.html
@@ -18,12 +18,25 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in V. fischeri — IM1xVibrio" />
 
+<meta property="og:description" content="This is the raw data documenting the influence of the alkyl chain length in 3
+  position on the toxicity to the marine luminescent bacteria V.
+  fischeri. The substances are named according to the UFT naming scheme of
+  these substances.
+  IM13 BF4 means 1-methyl-3-propylimidazolium tetrafluoroborate,
+  IM14 BF4 means 1-methyl-3-butylimidazolium tetrafluoroborate and
+  IM1-10 BF4 means 1-methyl-3-decylimidazolium tetrafluoroborate." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +64,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -85,7 +104,7 @@
         
     <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
 
-    <p>A dataframe containing the data as required for the <code><a href='drfit.html'>drfit</a></code>
+    <p>A dataframe containing the data as required for the <code>drfit</code>
   function. Additional columns contain the species tested (luminescent bacteria
   Vibrio fischeri, <code>organism</code>), and a field specifying if the data is
   regarded valid (<code>ok</code>).</p>
@@ -99,7 +118,7 @@
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'>  <span class='no'>rIM1xVibrio</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drfit.html'>drfit</a></span>(<span class='no'>IM1xVibrio</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
+    <pre class="examples"><div class='input'>  <span class='no'>rIM1xVibrio</span> <span class='kw'>&lt;-</span> <span class='fu'>drfit</span>(<span class='no'>IM1xVibrio</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
                        <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>10</span>, <span class='fl'>20</span>))</div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM13 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM14 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'></span>
@@ -142,7 +161,7 @@
 #&gt; 14  0.7172 0.4132    5.2141    4.6652  5.801e+00 6.446e-01    1.394
 #&gt; 15 -0.1790 0.8019    0.6622    0.5534  7.876e-01 6.212e-02    0.140
 #&gt; 16 -0.1831 0.4816    0.6560    0.5470  7.843e-01 5.738e-02    0.141</div><div class='input'>
-  <span class='no'>rIM1xVibrio.drc</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drcfit.html'>drcfit</a></span>(<span class='no'>IM1xVibrio</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
+  <span class='no'>rIM1xVibrio.drc</span> <span class='kw'>&lt;-</span> <span class='fu'>drcfit</span>(<span class='no'>IM1xVibrio</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
                             <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>10</span>, <span class='fl'>20</span>))</div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM13 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>IM14 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
@@ -223,7 +242,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/XY.html b/docs/reference/XY.html
index 7449f66..47ef324 100644
--- a/docs/reference/XY.html
+++ b/docs/reference/XY.html
@@ -18,12 +18,20 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Dose-Response data for two substances X and Y — XY" />
 
+<meta property="og:description" content="This is just a sample Lemna growth rate data set for two substances
+  arbitrarily named X and Y." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +59,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -85,11 +99,13 @@
     
     <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
 
-    <p><a href = 'http://www.uft.uni-bremen.de/chemie'>http://www.uft.uni-bremen.de/chemie</a></p>
+    <p><a href='http://www.uft.uni-bremen.de/chemie'>http://www.uft.uni-bremen.de/chemie</a></p>
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'>  <span class='co'>## Not run: demo(XY)</span></div></pre>
+    <pre class="examples"><div class='input'>  </div><span class='co'># NOT RUN {</span>
+<span class='fu'>demo</span>(<span class='no'>XY</span>)
+<span class='co'># }</span></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -111,7 +127,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/antifoul.html b/docs/reference/antifoul.html
index 9beb79f..8dd00c9 100644
--- a/docs/reference/antifoul.html
+++ b/docs/reference/antifoul.html
@@ -18,12 +18,22 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells — antifoul" />
 
+<meta property="og:description" content="This data set shows the response of the rat leukaemic cell line IPC-81 to
+  dilution series of tributyltin chloride (TBT) and Zink Pyrithione as retrieved
+  from the "cytotox" database of the UFT Department of Bioorganic Chemistry on
+  February 25, 2004" />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +61,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -88,11 +104,11 @@
     
     <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
 
-    <p><a href = 'http://www.uft.uni-bremen.de/chemie'>http://www.uft.uni-bremen.de/chemie</a></p>
+    <p><a href='http://www.uft.uni-bremen.de/chemie'>http://www.uft.uni-bremen.de/chemie</a></p>
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='no'>rantifoul.ED50</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drfit.html'>drfit</a></span>(<span class='no'>antifoul</span>,
+    <pre class="examples"><div class='input'><span class='no'>rantifoul.ED50</span> <span class='kw'>&lt;-</span> <span class='fu'>drfit</span>(<span class='no'>antifoul</span>,
                         <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
                         <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
                         <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>10</span>))</div><div class='output co'>#&gt; <span class='message'></span>
@@ -111,7 +127,7 @@
 #&gt; 2 microM 0.19286 -0.16436 0.67637        NA 0.68493   0.54320    0.87801
 #&gt; 3 microM 0.19199 -0.16012 0.41358        NA 0.69164   0.54808    0.88595
 #&gt; 4 microM 0.18810  0.63743 1.28891        NA 0.76724        NA         NA
-#&gt; 5 microM 0.22878 -0.41329 1.74249  0.610810 0.38611   0.29558    0.50142
+#&gt; 5 microM 0.22878 -0.41329 1.74249  0.610900 0.38611   0.29558    0.50142
 #&gt; 6 microM 0.22866 -0.39792 0.41696        NA 0.40002   0.31058    0.51102
 #&gt; 7 microM 0.22802 -0.40035 0.25395        NA 0.39779   0.30868    0.50874
 #&gt; 8 microM 0.23008  0.47647 2.51561        NA 0.40931        NA         NA
@@ -120,11 +136,11 @@
 #&gt; 2 0.093077
 #&gt; 3 0.085340
 #&gt; 4 0.053392
-#&gt; 5 0.120232
+#&gt; 5 0.120233
 #&gt; 6 0.116872
 #&gt; 7 0.110068
 #&gt; 8 0.121166</div><div class='input'>
-<span class='no'>rantifoul.drc</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drcfit.html'>drcfit</a></span>(<span class='no'>antifoul</span>,
+<span class='no'>rantifoul.drc</span> <span class='kw'>&lt;-</span> <span class='fu'>drcfit</span>(<span class='no'>antifoul</span>,
                         <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
                         <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
                         <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>10</span>))</div><div class='output co'>#&gt; <span class='message'></span>
@@ -177,7 +193,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/checkcontrols.html b/docs/reference/checkcontrols.html
index c33f7f2..2ab3e4d 100644
--- a/docs/reference/checkcontrols.html
+++ b/docs/reference/checkcontrols.html
@@ -18,12 +18,20 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Check raw data from range of plates or experiments — checkcontrols" />
 
+<meta property="og:description" content="Report control data from a specified range of microtiter plates or
+  experiments from a specified database." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +59,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -133,7 +147,9 @@
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='co'>## Not run: checkcontrols(15)</span></div></pre>
+    <pre class="examples"><span class='co'># NOT RUN {</span>
+<span class='fu'>checkcontrols</span>(<span class='fl'>15</span>)
+<span class='co'># }</span></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -149,7 +165,7 @@
     
   Johannes Ranke
   <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
-  <a href = 'http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
+  <a href='http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
 
   </div>
 </div>
@@ -160,7 +176,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/checkexperiment.html b/docs/reference/checkexperiment.html
index 8056a56..3ec5a09 100644
--- a/docs/reference/checkexperiment.html
+++ b/docs/reference/checkexperiment.html
@@ -18,12 +18,20 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Check raw data from a specified experiment or microtiter plate — checkexperiment" />
 
+<meta property="og:description" content="Report metadata from a specified experiment or microtiter plate from a
+  specified database, box plot controls, and plot the dose-response data." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +59,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -105,8 +119,10 @@
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='co'># Check plate number 3 in the cytotox database</span>
-<span class='co'>## Not run: checkplate(3)</span></div></pre>
+    <pre class="examples"><div class='input'># Check plate number 3 in the cytotox database
+</div><span class='co'># NOT RUN {</span>
+<span class='fu'>checkplate</span>(<span class='fl'>3</span>)
+<span class='co'># }</span></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -122,7 +138,7 @@
     
   Johannes Ranke
   <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
-  <a href = 'http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
+  <a href='http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
 
   </div>
 </div>
@@ -133,7 +149,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/checksubstance.html b/docs/reference/checksubstance.html
index 4188b19..184a757 100644
--- a/docs/reference/checksubstance.html
+++ b/docs/reference/checksubstance.html
@@ -18,12 +18,20 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Check raw data for a specified substance — checksubstance" />
 
+<meta property="og:description" content="Report metadata for a specified substance from a specified database, and plot
+  the data." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +59,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -139,8 +153,10 @@
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='co'># Check substance IM14 BF4 in the cytotox database</span>
-<span class='co'>## Not run: checksubstance("IM14 BF4")</span></div></pre>
+    <pre class="examples"><div class='input'># Check substance IM14 BF4 in the cytotox database
+</div><span class='co'># NOT RUN {</span>
+<span class='fu'>checksubstance</span>(<span class='st'>"IM14 BF4"</span>)
+<span class='co'># }</span></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -156,7 +172,7 @@
     
   Johannes Ranke
   <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
-  <a href = 'http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
+  <a href='http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
 
   </div>
 </div>
@@ -167,7 +183,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/drcfit.html b/docs/reference/drcfit.html
index d433c41..b208f4b 100644
--- a/docs/reference/drcfit.html
+++ b/docs/reference/drcfit.html
@@ -18,12 +18,20 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Fit dose-response models using the drc package — drcfit" />
 
+<meta property="og:description" content="Fit dose-response relationships to dose-response data and calculate
+  biometric results for (eco)toxicity evaluation using the drc package" />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +59,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -91,7 +105,7 @@
     used for the dose and a numeric vector &#8220;response&#8221; with the response
     values of the test system normalized between 0 and 1. Such a data frame can
     be easily obtained if a compliant RODBC data source is available for use in
-    conjunction with the function <code><a href='drdata.html'>drdata</a></code>.</p>
+    conjunction with the function <code>drdata</code>.</p>
 <p>If there is a column called &#8220;ok&#8221; and it is set to &#8220;no fit&#8221; in
     a specific line, then the corresponding data point will be excluded from
     the fitting procedure, although it will be plotted.</p></td>
@@ -101,7 +115,7 @@
       <td><p>A boolean defining if cumulative density curves of normal distributions
     are fitted against the decadic logarithm of the dose.  Default ist TRUE.
     Note that the parameter definitions used in the model are different to the
-    ones used in <code><a href='drfit.html'>drfit</a></code>. Parameter e from <code>LN.2</code> is listed
+    ones used in <code>drfit</code>. Parameter e from <code>LN.2</code> is listed
     as a here, and parameter b from there is listed as b.</p></td>
     </tr>
     <tr>
@@ -110,7 +124,7 @@
     <code>plogis</code> are fitted to the decadic logarithm of the dose.
     Default is FALSE.
     Again the parameter definitions used in the model are different to the
-    ones used in <code><a href='drfit.html'>drfit</a></code>. Parameter e from <code>LL.2</code> is listed
+    ones used in <code>drfit</code>. Parameter e from <code>LL.2</code> is listed
     as a here, and parameter b from LL.2 is listed as b.</p></td>
     </tr>
     <tr>
@@ -118,12 +132,12 @@
       <td><p>A boolean defining if Weibull dose-response models
     (<code>W1.2</code> are fitted to the untransformed dose. Default is FALSE.
     Note that the results differ from the ones obtained with
-    <code><a href='drfit.html'>drfit</a></code>, due to a different model specification.</p></td>
+    <code>drfit</code>, due to a different model specification.</p></td>
     </tr>
     <tr>
       <th>linlogit</th>
       <td><p>A boolean defining if the linear-logistic function
-    <code><a href='linlogitf.html'>linlogitf</a></code> as defined by van Ewijk and Hoekstra 1993 is
+    <code>linlogitf</code> as defined by van Ewijk and Hoekstra 1993 is
     fitted to the data. Default is FALSE. Obtaining the ED50 (and EDx values
     in general) uses <code>ED</code> internally and does not always give a
     result.</p></td>
@@ -202,8 +216,8 @@
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
     <p>Further examples are given in help pages to the datasets
-  <code><a href='antifoul.html'>antifoul</a></code>, <code><a href='IM1xIPC81.html'>IM1xIPC81</a></code> and
-  <code><a href='IM1xVibrio.html'>IM1xVibrio</a></code>.</p>
+  <code>antifoul</code>, <code>IM1xIPC81</code> and
+  <code>IM1xVibrio</code>.</p>
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
@@ -237,7 +251,7 @@
     <h2>Author</h2>
     
   Johannes Ranke <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
-  <a href = 'http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
+  <a href='http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
   The functionality of the drc package used under the hood in this function
   was written by Christian Ritz.
 
@@ -250,7 +264,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/drdata.html b/docs/reference/drdata.html
index f4716f1..6387e76 100644
--- a/docs/reference/drdata.html
+++ b/docs/reference/drdata.html
@@ -18,12 +18,19 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Get dose-response data via RODBC — drdata" />
 
+<meta property="og:description" content="Get dose-response data from an adequate ODBC data source" />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +58,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -155,58 +168,60 @@
   containing:</p><table><tr><td>
     [MySQL] </td>
 <td> </td>
-</tr><tr><td> </td>
-<td>
+<td> </td>
+</tr><tr><td>
     Description </td>
-</tr><tr><td> = </td>
+<td> = </td>
 <td> MySQL driver for ODBC </td>
 </tr><tr><td>
     Driver </td>
 <td> = </td>
-</tr><tr><td> /usr/local/lib/libmyodbc.so </td>
-<td>
+<td> /usr/local/lib/libmyodbc.so </td>
+</tr><tr><td>
     Setup </td>
-</tr><tr><td> = </td>
+<td> = </td>
 <td> /usr/lib/odbc/libodbcmyS.so </td>
 </tr></table><p>and the file <code class="file">/etc/odbc.ini</code> containing:</p><table><tr><td>
     [cytotox] </td>
 <td> </td>
-</tr><tr><td> </td>
-<td>
+<td> </td>
+</tr><tr><td>
     Description </td>
-</tr><tr><td> = </td>
+<td> = </td>
 <td> Cytotoxicity database of the department of bioorganic chemistry, UFT Bremen </td>
 </tr><tr><td>
     Driver </td>
 <td> = </td>
-</tr><tr><td> MySQL </td>
-<td>
+<td> MySQL </td>
+</tr><tr><td>
     Trace </td>
-</tr><tr><td> = </td>
+<td> = </td>
 <td> Yes  </td>
 </tr><tr><td>
     TraceFile </td>
 <td> = </td>
-</tr><tr><td> /tmp/odbc.log  </td>
-<td>
+<td> /tmp/odbc.log  </td>
+</tr><tr><td>
     Database </td>
-</tr><tr><td> = </td>
+<td> = </td>
 <td> cytotox  </td>
 </tr><tr><td>
     Server </td>
 <td> = </td>
-</tr><tr><td> eckehaat  </td>
-<td>
+<td> eckehaat  </td>
+</tr><tr><td>
     Port </td>
-</tr><tr><td> = </td>
+<td> = </td>
 <td> 3306  </td>
 </tr></table>
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='co'># Get cytotoxicity data for Tributyltin and zinc pyrithione, tested with IPC-81</span>
-<span class='co'># cells</span>
-<span class='co'>## Not run: drdata(c("TBT","ZnPT2"))</span></div></pre>
+    <pre class="examples"><div class='input'># Get cytotoxicity data for Tributyltin and zinc pyrithione, tested with IPC-81
+# cells
+</div><span class='co'># NOT RUN {</span>
+<span class='fu'>drdata</span>(<span class='fu'>c</span>(<span class='st'>"TBT"</span>,<span class='st'>"ZnPT2"</span>))
+<span class='co'># }</span></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -224,7 +239,7 @@
     
   Johannes Ranke
   <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
-  <a href = 'http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
+  <a href='http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
 
   </div>
 </div>
@@ -235,7 +250,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/drfit-package-1.png b/docs/reference/drfit-package-1.png
new file mode 100644
index 0000000..64d831f
--- /dev/null
+++ b/docs/reference/drfit-package-1.png
diff --git a/docs/reference/drfit-package.html b/docs/reference/drfit-package.html
index 9cc3de4..1ce4fed 100644
--- a/docs/reference/drfit-package.html
+++ b/docs/reference/drfit-package.html
@@ -18,12 +18,19 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Dose-response data evaluation — drfit-package" />
 
+<meta property="og:description" content="See ../DESCRIPTION" />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +58,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -72,13 +85,13 @@
     </div>
 
     
-    <p>See <a href = '../DESCRIPTION'>../DESCRIPTION</a></p>
+    <p>See <a href='../DESCRIPTION'>../DESCRIPTION</a></p>
     
 
         
     <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>
 
-    <p>There is an introductory article located in <a href = '../doc/drfit-Rnews.pdf'>../doc/drfit-Rnews.pdf</a>,
+    <p>There is an introductory article located in <a href='../doc/drfit-Rnews.pdf'>../doc/drfit-Rnews.pdf</a>,
 which will be published in the R News special edition on the use
 of R for chemists.</p>
     
@@ -96,14 +109,14 @@ is its user-friendliness.</p>
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
     <pre class="examples"><div class='input'><span class='fu'>data</span>(<span class='no'>antifoul</span>)
-<span class='no'>r</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drfit.html'>drfit</a></span>(<span class='no'>antifoul</span>)</div><div class='output co'>#&gt; <span class='message'></span>
+<span class='no'>r</span> <span class='kw'>&lt;-</span> <span class='fu'>drfit</span>(<span class='no'>antifoul</span>)</div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='input'><span class='fu'>format</span>(<span class='no'>r</span>,<span class='kw'>digits</span><span class='kw'>=</span><span class='fl'>2</span>)</div><div class='output co'>#&gt;      Substance ndl   n  lld lhd  mtype logED50  2.5%  97.5%   unit sigma     a
 #&gt; 1          TBT  38 135 -2.7 2.4 probit   -0.16 -0.27 -0.056 microM  0.19 -0.16
 #&gt; 2 Zn Pyrithion  27  81 -2.1 2.0 probit   -0.40 -0.51 -0.292 microM  0.23 -0.40
 #&gt;      b
 #&gt; 1 0.68
-#&gt; 2 0.42</div><div class='input'><span class='fu'><a href='drplot.html'>drplot</a></span>(<span class='no'>r</span>,<span class='no'>antifoul</span>,<span class='kw'>overlay</span><span class='kw'>=</span><span class='fl'>TRUE</span>,<span class='kw'>bw</span><span class='kw'>=</span><span class='fl'>FALSE</span>)</div><img src='drfit-package-9.png' alt='' width='540' height='400' /></pre>
+#&gt; 2 0.42</div><div class='input'><span class='fu'>drplot</span>(<span class='no'>r</span>,<span class='no'>antifoul</span>,<span class='kw'>overlay</span><span class='kw'>=</span><span class='fl'>TRUE</span>,<span class='kw'>bw</span><span class='kw'>=</span><span class='fl'>FALSE</span>)</div><div class='img'><img src='drfit-package-1.png' alt='' width='700' height='432.632880098887' /></div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -131,7 +144,7 @@ Author and Maintainer: Johannes Ranke &lt;jranke@uni-bremen.de&gt;
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/drfit.html b/docs/reference/drfit.html
index 52ecb2b..4430a5b 100644
--- a/docs/reference/drfit.html
+++ b/docs/reference/drfit.html
@@ -18,12 +18,20 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Fit dose-response models — drfit" />
 
+<meta property="og:description" content="Fit dose-response relationships to dose-response data and calculate
+  biometric results for (eco)toxicity evaluation" />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +59,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -93,7 +107,7 @@
     used for the dose and a numeric vector &#8220;response&#8221; with the response
     values of the test system normalized between 0 and 1. Such a data frame can
     be easily obtained if a compliant RODBC data source is available for use in
-    conjunction with the function <code><a href='drdata.html'>drdata</a></code>.</p>
+    conjunction with the function <code>drdata</code>.</p>
 <p>If there is a column called &#8220;ok&#8221; and it is set to &#8220;no fit&#8221; in
     a specific line, then the corresponding data point will be excluded from
     the fitting procedure, although it will be plotted.</p></td>
@@ -127,7 +141,7 @@
     <tr>
       <th>linlogit</th>
       <td><p>A boolean defining if the linear-logistic function
-    <code><a href='linlogitf.html'>linlogitf</a></code> as defined by van Ewijk and Hoekstra 1993 is
+    <code>linlogitf</code> as defined by van Ewijk and Hoekstra 1993 is
     fitted to the data. Default is FALSE.</p></td>
     </tr>
     <tr>
@@ -242,10 +256,10 @@
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
     <p>Further examples are given in help pages to the datasets
-  <code><a href='antifoul.html'>antifoul</a></code>, <code><a href='IM1xIPC81.html'>IM1xIPC81</a></code> and
-  <code><a href='IM1xVibrio.html'>IM1xVibrio</a></code>.
+  <code>antifoul</code>, <code>IM1xIPC81</code> and
+  <code>IM1xVibrio</code>.
   Since version 0.6.1 of this package, there is a drop-in replacement function
-  <code><a href='drcfit.html'>drcfit</a></code> which internally uses the drc package and also gives
+  <code>drcfit</code> which internally uses the drc package and also gives
   confidence intervals for EDx values via this package.</p>
     
 
@@ -278,7 +292,7 @@
     
   Johannes Ranke
   <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
-  <a href = 'http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
+  <a href='http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
 
   </div>
 </div>
@@ -289,7 +303,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/drplot.html b/docs/reference/drplot.html
index 4225966..b64d4e5 100644
--- a/docs/reference/drplot.html
+++ b/docs/reference/drplot.html
@@ -18,12 +18,20 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Plot dose-response models — drplot" />
 
+<meta property="og:description" content="Produce graphics of dose-response data and dose-response relationships
+  either combined or separately, for one or more substances." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +59,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -85,11 +99,11 @@
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
       <th>drresults</th>
-      <td><p>A data frame as returned from <code><a href='drfit.html'>drfit</a></code>.</p></td>
+      <td><p>A data frame as returned from <code>drfit</code>.</p></td>
     </tr>
     <tr>
       <th>data</th>
-      <td><p>A data frame as returned from <code><a href='drdata.html'>drdata</a></code>. The data frame has to
+      <td><p>A data frame as returned from <code>drdata</code>. The data frame has to
     contain at least a factor called "substance", a vector called "unit"
     containing the unit used for the dose, a column "response" with the
     response values of the test system normalized between 0 and 1, a column
@@ -227,9 +241,11 @@
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
     <pre class="examples"><div class='input'><span class='fu'>data</span>(<span class='no'>antifoul</span>)
-<span class='no'>r</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drfit.html'>drfit</a></span>(<span class='no'>antifoul</span>)</div><div class='output co'>#&gt; <span class='message'></span>
+<span class='no'>r</span> <span class='kw'>&lt;-</span> <span class='fu'>drfit</span>(<span class='no'>antifoul</span>)</div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'></span>
-#&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='input'><span class='co'>## Not run: drplot(r,antifoul)</span></div></pre>
+#&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><span class='co'># NOT RUN {</span>
+<span class='fu'>drplot</span>(<span class='no'>r</span>,<span class='no'>antifoul</span>)
+<span class='co'># }</span></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -247,7 +263,7 @@
     
   Johannes Ranke
   <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
-  <a href = 'http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
+  <a href='http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
 
   </div>
 </div>
@@ -258,7 +274,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 896e64d..e3ecd24 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -18,12 +18,16 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-
+  
+  
+<meta property="og:title" content="Function reference" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +55,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -187,7 +197,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/linlogitf.html b/docs/reference/linlogitf.html
index b19426f..deed92a 100644
--- a/docs/reference/linlogitf.html
+++ b/docs/reference/linlogitf.html
@@ -18,12 +18,20 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Linear-logistic function — linlogitf" />
 
+<meta property="og:description" content="Helper function describing a special type of dose-response curves, showing a stimulus
+  at subtoxic doses." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +59,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -128,7 +142,7 @@
     
   Johannes Ranke
   <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
-  <a href = 'http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
+  <a href='http://www.uft.uni-bremen.de/chemie/ranke'>http://www.uft.uni-bremen.de/chemie/ranke</a>
 
   </div>
 </div>
@@ -139,7 +153,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/pyrithione.html b/docs/reference/pyrithione.html
index ee2cc75..d7b6ced 100644
--- a/docs/reference/pyrithione.html
+++ b/docs/reference/pyrithione.html
@@ -18,12 +18,21 @@
 <!-- Font Awesome icons -->
 <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
 
+<!-- clipboard.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
 <script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
+  
+  
+<meta property="og:title" content="Cytotoxicity data for different pyrithionates and related species — pyrithione" />
 
+<meta property="og:description" content="This data shows the cytotoxicity of pyrithione salts as well as the free
+ pyrithione, its oxidation product and some other related compounds to the
+ IPC-81 cell line." />
+<meta name="twitter:card" content="summary" />
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -51,6 +60,12 @@
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
+  <a href="../index.html">
+    <span class="fa fa-home fa-lg"></span>
+     
+  </a>
+</li>
+<li>
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
@@ -81,7 +96,7 @@
         
     <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
 
-    <p>A dataframe containing the data as required for the <code><a href='drfit.html'>drfit</a></code>
+    <p>A dataframe containing the data as required for the <code>drfit</code>
   function.</p>
     
     <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
@@ -93,7 +108,9 @@
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'>  <span class='co'>## Not run: demo(pyrithione)</span></div></pre>
+    <pre class="examples"><div class='input'>  </div><span class='co'># NOT RUN {</span>
+<span class='fu'>demo</span>(<span class='no'>pyrithione</span>)
+<span class='co'># }</span></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -115,7 +132,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
+  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
 </div>
 
       </footer>