diff options
| author | ranke <ranke@d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc> | 2005-12-21 15:33:22 +0000 |
|---|---|---|
| committer | ranke <ranke@d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc> | 2005-12-21 15:33:22 +0000 |
| commit | 699448335d6fc5668b569577cb38a628c258eaec (patch) | |
| tree | 3e282bbf0a58791b49572153876188526d6cbfec /chm/drdata.html | |
| parent | d89badab8c65995b6381418989ffed965fa9d626 (diff) | |
Changed the terminology from EC50 to ED50 reflecting that the package is meant
for dose-response analysis in general and not only for concentration-response
analysis. This is the first revision that has been prepared with the knowledge
of the existence of the drc package for dose-response curve analysis.
git-svn-id: http://kriemhild.uft.uni-bremen.de/svn/drfit@48 d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc
Diffstat (limited to 'chm/drdata.html')
| -rw-r--r-- | chm/drdata.html | 147 |
1 files changed, 0 insertions, 147 deletions
diff --git a/chm/drdata.html b/chm/drdata.html deleted file mode 100644 index a2ef9d9..0000000 --- a/chm/drdata.html +++ /dev/null @@ -1,147 +0,0 @@ -<html><head><title>Get dose-response data</title>
-<link rel="stylesheet" type="text/css" href="Rchm.css">
-</head>
-<body>
-
-<table width="100%"><tr><td>drdata(drfit)</td><td align="right">R Documentation</td></tr></table><object type="application/x-oleobject" classid="clsid:1e2a7bd0-dab9-11d0-b93a-00c04fc99f9e">
-<param name="keyword" value="R: drdata">
-<param name="keyword" value=" Get dose-response data">
-</object>
-
-
-<h2>Get dose-response data</h2>
-
-
-<h3>Description</h3>
-
-<p>
-Get dose-response data from a remote mysql server
-</p>
-
-
-<h3>Usage</h3>
-
-<pre>
- drdata(substances, experimentator = "%", db = "cytotox", celltype = "IPC-81",
- whereClause = "1", ok = "'ok'")
-</pre>
-
-
-<h3>Arguments</h3>
-
-<table summary="R argblock">
-<tr valign="top"><td><code>substances</code></td>
-<td>
-A string or an array of strings with the substance names for
-which dose-response data is to be retrieved.</td></tr>
-<tr valign="top"><td><code>experimentator</code></td>
-<td>
-The name of the experimentator whose data is to be used.</td></tr>
-<tr valign="top"><td><code>db</code></td>
-<td>
-The database to be used. Currently only "cytotox" of the UFT Department of
-Bioorganic Chemistry is supported.</td></tr>
-<tr valign="top"><td><code>celltype</code></td>
-<td>
-Currently, only data for IPC-81, C6, NB4, HeLa, Jurkat and U937 are supported.</td></tr>
-<tr valign="top"><td><code>whereClause</code></td>
-<td>
-With this argument, additional conditions for the SQL query can be set,
-e.g. "where plate != 710". The default is 1 (in SQL syntax this means TRUE).</td></tr>
-<tr valign="top"><td><code>ok</code></td>
-<td>
-With the default value "'ok'", only data that has been checked and set to "ok"
-in the database is retrieved. Another sensible argument would be "'ok','?'", in
-order to additionally retrieve data which has not yet been checked.</td></tr>
-</table>
-
-<h3>Details</h3>
-
-<p>
-The function is currently only used for retrieving data from the
-mysql database "cytotox" of the UFT Department of Bioorganic Chemistry.
-Access to this database is limited to UFT staff. Additionally to the
-installation of the RODBC package, it is required to set up a ODBC data
-source with the name "cytotox", using an ODBC driver for mysql, probably
-myODBC. Then, under Unix, you can use iodbc or unixodbc for setting up the
-respective data source with data source name (DSN) "cytotox". For my
-setting using unixodbc, I am using the file ‘<TT>/etc/odbcinst.ini</TT>’
-containing:
-<table summary="Rd table">
-<tr>
- <td align="left">[MySQL] </td> <td align="left"> </td> <td align="left"> </td>
-</tr>
-<tr>
- <td align="left"> Description </td> <td align="left"> = </td> <td align="left"> MySQL driver for ODBC </td>
-</tr>
-<tr>
- <td align="left"> Driver </td> <td align="left"> = </td> <td align="left"> /usr/local/lib/libmyodbc.so </td>
-</tr>
-<tr>
- <td align="left"> Setup </td> <td align="left"> = </td> <td align="left"> /usr/lib/odbc/libodbcmyS.so </td>
-</tr>
-</table>
-<p>
-and the file ‘<TT>/etc/odbc.ini</TT>’ containing:
-<table summary="Rd table">
-<tr>
- <td align="left">[cytotox] </td> <td align="left"> </td> <td align="left"> </td>
-</tr>
-<tr>
- <td align="left"> Description </td> <td align="left"> = </td> <td align="left"> Cytotoxicity database of the department of bioorganic chemistry, UFT Bremen </td>
-</tr>
-<tr>
- <td align="left"> Driver </td> <td align="left"> = </td> <td align="left"> MySQL </td>
-</tr>
-<tr>
- <td align="left"> Trace </td> <td align="left"> = </td> <td align="left"> Yes </td>
-</tr>
-<tr>
- <td align="left"> TraceFile </td> <td align="left"> = </td> <td align="left"> /tmp/odbc.log </td>
-</tr>
-<tr>
- <td align="left"> Database </td> <td align="left"> = </td> <td align="left"> cytotox </td>
-</tr>
-<tr>
- <td align="left"> Server </td> <td align="left"> = </td> <td align="left"> eckehaat </td>
-</tr>
-<tr>
- <td align="left"> Port </td> <td align="left"> = </td> <td align="left"> 3306 </td>
-</tr>
-</table>
-.
-</p>
-
-
-<h3>Value</h3>
-
-<table summary="R argblock">
-<tr valign="top"><td><code>data</code></td>
-<td>
-A data frame with a factor describing the dose levels, the numeric dose levels
-and a numeric column describing the response, as well as the entries for
-plate, experimentator, performed (date of test performance), celltype, unit
-(of the dose/concentration), and for the ok field in the database.</td></tr>
-</table>
-
-<h3>Author(s)</h3>
-
-<p>
-Johannes Ranke
-<a href="mailto:jranke@uni-bremen.de">jranke@uni-bremen.de</a>
-<a href="http://www.uft.uni-bremen.de/chemie/ranke">http://www.uft.uni-bremen.de/chemie/ranke</a>
-</p>
-
-
-<h3>Examples</h3>
-
-<pre>
-# Get cytotoxicity data for Tributyltin and zinc pyrithione, tested with IPC-81 cells
-## Not run: data <- drdata(c("TBT","Zn Pyrithion"))
-</pre>
-
-
-
-<hr><div align="center"><a href="00Index.html">[Package Contents]</a></div>
-
-</body></html>
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