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| author | (no author) <(no author)@d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc> | 2004-07-27 07:36:01 +0000 |
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| committer | (no author) <(no author)@d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc> | 2004-07-27 07:36:01 +0000 |
| commit | 8154a03c79eb910c42dcff03fd8fa611cdc8cc9d (patch) | |
| tree | c4e64967d78078a0fb0a8c9ec85307c35c9ec8f9 /chm/drplot.html | |
First version published on CRAN
git-svn-id: http://kriemhild.uft.uni-bremen.de/svn/drfit@1 d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc
Diffstat (limited to 'chm/drplot.html')
| -rw-r--r-- | chm/drplot.html | 131 |
1 files changed, 131 insertions, 0 deletions
diff --git a/chm/drplot.html b/chm/drplot.html new file mode 100644 index 0000000..34ae967 --- /dev/null +++ b/chm/drplot.html @@ -0,0 +1,131 @@ +<html><head><title>Plot dose-response models</title>
+<link rel="stylesheet" type="text/css" href="Rchm.css">
+</head>
+<body>
+
+<table width="100%"><tr><td>drplot(drfit)</td><td align="right">R Documentation</td></tr></table><object type="application/x-oleobject" classid="clsid:1e2a7bd0-dab9-11d0-b93a-00c04fc99f9e">
+<param name="keyword" value="R: drplot">
+<param name="keyword" value=" Plot dose-response models">
+</object>
+
+
+<h2>Plot dose-response models</h2>
+
+
+<h3>Description</h3>
+
+<p>
+Produce graphics of dose-response data and dose-response relationships
+either combined or separately, for one or more substances.
+</p>
+
+
+<h3>Usage</h3>
+
+<pre>
+ drplot(drresults, data, dtype, alpha, path, fileprefix, overlay,
+ postscript, color, colors, fitcolors)
+</pre>
+
+
+<h3>Arguments</h3>
+
+<table summary="R argblock">
+<tr valign="top"><td><code>drresults</code></td>
+<td>
+A data frame as returned from <code><a href="drfit.html">drfit</a></code>.
+</td></tr>
+<tr valign="top"><td><code>data</code></td>
+<td>
+A data frame as returned from <code><a href="drdata.html">drdata</a></code>. If data is to be
+plotted, the data frame has to contain at least a factor called
+"substance", a vector called "unit" containing the unit used for the dose,
+a column "response" with the response values of the test system normalized
+between 0 and 1, a column "dose" with the numeric dose values and a factor
+called "dosefactor" containing the dose as a factor. If plotting of the data is
+not required, data can be set to FALSE.
+</td></tr>
+<tr valign="top"><td><code>dtype</code></td>
+<td>
+A string describing if the raw data should be plotted ("raw"), or
+an error bar should be constructed from the standard deviations of the
+responses at each dose level ("std", default value) or from the confidence
+intervals ("conf"). Of course, dtype only makes a difference, if a valid data
+object has been referenced.
+</td></tr>
+<tr valign="top"><td><code>alpha</code></td>
+<td>
+The confidence level, defaulting to 0.95, only used if dtype "conf" has been
+chosen.
+</td></tr>
+<tr valign="top"><td><code>path</code></td>
+<td>
+The path where graphic files should be put if any are produced. Defaults
+to "./" i.e. the current working directory of R.
+</td></tr>
+<tr valign="top"><td><code>fileprefix</code></td>
+<td>
+A string which will form the beginning of each filename, if graphic files are
+created. Defaults to "drplot".
+</td></tr>
+<tr valign="top"><td><code>overlay</code></td>
+<td>
+If TRUE, all output will be put into one graph, otherwise a separate graph
+will be created for each substance. In the latter case, on-screen display
+(postscript=FALSE) only works correctly for data plots. Dose-response models
+will all be put into the last graph in this case.
+</td></tr>
+<tr valign="top"><td><code>postscript</code></td>
+<td>
+If TRUE, (a) postscript graph(s) will be created. Otherwise, graphics will be
+displayed with a screen graphics device.
+</td></tr>
+<tr valign="top"><td><code>color</code></td>
+<td>
+If TRUE, a sensible selection of colors will be attempted. If false, everything
+will be drawn in black
+</td></tr>
+<tr valign="top"><td><code>colors</code></td>
+<td>
+This is a vector of colors, defaulting to 1:8, used for plotting the data.
+</td></tr>
+<tr valign="top"><td><code>fitcolors</code></td>
+<td>
+Here you can specify a palette for the colors of the dose-response fits. The
+default value is "default", which produces rainbow colors.
+</td></tr>
+</table>
+
+<h3>Value</h3>
+
+<table summary="R argblock">
+<tr valign="top"><td><code>results</code></td>
+<td>
+A data frame containing at least one line for each substance. If the data did not
+show a mean response < 0.5 at the highest dose level, the modeltype is set to "none".
+Every successful fit is reported in one line. Parameters of the fitted curves are only
+reported if the fitted EC50 is not higher than the highest dose.</td></tr>
+</table>
+
+<h3>Author(s)</h3>
+
+<p>
+Johannes Ranke
+<a href="mailto:jranke@uni-bremen.de">jranke@uni-bremen.de</a>
+<a href="http://www.uft.uni-bremen.de/chemie/ranke">http://www.uft.uni-bremen.de/chemie/ranke</a>
+</p>
+
+
+<h3>Examples</h3>
+
+<pre>
+## Not run: data(antifoul)
+## Not run: r <- drfit(antifoul)
+## Not run: format(r,digits=2)
+</pre>
+
+
+
+<hr><div align="center"><a href="00Index.html">[Package Contents]</a></div>
+
+</body></html>
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