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authorJohannes Ranke <jranke@uni-bremen.de>2017-03-31 12:10:59 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2017-03-31 12:10:59 +0200
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+ <h1>Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in IPC-81 cells</h1>
+ </div>
+
+
+ <p>This is the raw data documenting the influence of the alkyl
+ chain length in 3 position on the toxicity to the
+ promyelocytic leukemia rat cell line IPC-81. The substances
+ are named according to the UFT naming scheme of these
+ substances. IM13 BF4 means 1-methyl-3-propylimidazolium
+ tetrafluoroborate, IM14 BF4 means
+ 1-methyl-3-butylimidazolium tetrafluoroborate and IM1-10
+ BF4 means 1-methyl-3-decylimidazolium tetrafluoroborate.
+ This is a subset (only the BF4 anion) of the data
+ shown in Figure 3 in Ranke et al. (2004).</p>
+
+
+ <pre><span class='fu'>data</span>(<span class='no'>IM1xIPC81</span>)</pre>
+
+ <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
+
+ <p>A dataframe containing the data as required for the
+ <code><a href='drfit.html'>drfit</a></code> function. An additional column contains
+ the tested organism (name of the cell line).</p>
+
+ <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
+
+ <p>Ranke J, Mölter K, Stock F, Bottin-Weber U, Poczobutt J,
+ Hoffmann J, Ondruschka B, Filser J, Jastorff B (2004)
+ Biological effects of imidazolium ionic liquids with varying
+ chain lenghts in acute Vibrio fischeri and WST-1 cell
+ viability assays. Ecotoxicology and Environmental Safety
+ 58(3) 396-404</p>
+
+
+ <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
+ <pre class="examples"><div class='input'> <span class='no'>rIM1xIPC81</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drfit.html'>drfit</a></span>(<span class='no'>IM1xIPC81</span>, <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fl'>10</span>)</div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM13 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM14 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM15 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM16 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM17 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM18 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM19 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM1-10 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='input'>
+ <span class='no'>rIM1xIPC81.drc</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drcfit.html'>drcfit</a></span>(<span class='no'>IM1xIPC81</span>, <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fl'>10</span>)</div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM13 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM14 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM15 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM16 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM17 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM18 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM19 BF4: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
+#&gt; <span class='message'>IM1-10 BF4: Fitting data...</span></div><div class='input'>
+ <span class='fu'>print</span>(<span class='no'>rIM1xIPC81</span>,<span class='kw'>digits</span><span class='kw'>=</span><span class='fl'>4</span>)</div><div class='output co'>#&gt; Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma
+#&gt; 1 IM13 BF4 9 81 0.5918 3.000 inactive NA NA NA microM NA
+#&gt; 2 IM14 BF4 20 216 -0.0103 3.176 no fit NA NA NA microM NA
+#&gt; 3 IM15 BF4 9 135 0.5918 3.000 inactive NA NA NA microM NA
+#&gt; 4 IM16 BF4 9 108 0.5918 3.000 inactive NA NA NA microM NA
+#&gt; 5 IM17 BF4 9 81 0.5918 3.000 linlogit 2.5786 2.506 2.6617 microM 0.2376
+#&gt; 6 IM18 BF4 9 135 0.5918 3.000 linlogit 1.6806 1.623 1.7419 microM 0.2325
+#&gt; 7 IM19 BF4 9 81 0.5918 3.000 linlogit 1.6496 1.598 1.7031 microM 0.1453
+#&gt; 8 IM1-10 BF4 11 162 -0.0103 3.000 linlogit 0.7697 0.687 0.8544 microM 0.2988
+#&gt; a b c ED50 ED50 2.5% ED50 97.5% EDx10
+#&gt; 1 NA NA NA NA NA NA NA
+#&gt; 2 NA NA NA NA NA NA NA
+#&gt; 3 NA NA NA NA NA NA NA
+#&gt; 4 NA NA NA NA NA NA NA
+#&gt; 5 2.5786 2.300 0.01468 378.941 320.424 458.918 230.782
+#&gt; 6 1.6806 2.237 0.05719 47.930 41.973 55.194 27.367
+#&gt; 7 1.6496 1.977 0.10956 44.628 39.671 50.483 23.031
+#&gt; 8 0.7697 1.936 0.45809 5.884 4.864 7.152 2.835</div><div class='input'> <span class='fu'>print</span>(<span class='no'>rIM1xIPC81.drc</span>,<span class='kw'>digits</span><span class='kw'>=</span><span class='fl'>4</span>)</div><div class='output co'>#&gt; Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma
+#&gt; 1 IM13 BF4 9 81 0.5918 3.000 inactive NA NA NA microM NA
+#&gt; 2 IM14 BF4 20 216 -0.0103 3.176 linlogit NA NA NA microM 0.1529
+#&gt; 3 IM15 BF4 9 135 0.5918 3.000 inactive NA NA NA microM NA
+#&gt; 4 IM16 BF4 9 108 0.5918 3.000 inactive NA NA NA microM NA
+#&gt; 5 IM17 BF4 9 81 0.5918 3.000 linlogit 2.5786 2.4935 2.6497 microM 0.2376
+#&gt; 6 IM18 BF4 9 135 0.5918 3.000 linlogit 1.6806 1.6168 1.7362 microM 0.2325
+#&gt; 7 IM19 BF4 9 81 0.5918 3.000 linlogit 1.6496 1.5940 1.6990 microM 0.1453
+#&gt; 8 IM1-10 BF4 11 162 -0.0103 3.000 linlogit 0.7697 0.6774 0.8458 microM 0.2988
+#&gt; a b c ED50 ED50 2.5% ED50 97.5% EDx10 EDx10 2.5%
+#&gt; 1 NA NA NA NA NA NA NA NA
+#&gt; 2 5.390e+15 0.3148 -0.0001736 NA NA NA NA NA
+#&gt; 3 NA NA NA NA NA NA NA NA
+#&gt; 4 NA NA NA NA NA NA NA NA
+#&gt; 5 1.281e+02 2.3001 0.0146821 378.964 311.555 446.372 230.790 202.915
+#&gt; 6 2.079e+01 2.2373 0.0571925 47.930 41.382 54.478 27.367 23.809
+#&gt; 7 1.342e+01 1.9773 0.1094542 44.630 39.260 50.000 23.036 20.614
+#&gt; 8 2.258e+00 1.9362 0.4580784 5.884 4.758 7.011 2.835 2.181
+#&gt; EDx10 97.5%
+#&gt; 1 NA
+#&gt; 2 NA
+#&gt; 3 NA
+#&gt; 4 NA
+#&gt; 5 258.665
+#&gt; 6 30.925
+#&gt; 7 25.459
+#&gt; 8 3.489</div></pre>
+ </div>
+ <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
+ <h2>Contents</h2>
+ <ul class="nav nav-pills nav-stacked">
+
+ <li><a href="#format">Format</a></li>
+
+ <li><a href="#source">Source</a></li>
+
+ <li><a href="#examples">Examples</a></li>
+ </ul>
+
+ </div>
+</div>
+
+ <footer>
+ <div class="copyright">
+ <p>Developed by Johannes Ranke.</p>
+</div>
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