diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2023-07-21 08:24:12 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2023-07-21 08:32:32 +0200 |
| commit | d04bac001217855b4e9a1490a35bef3325441b55 (patch) | |
| tree | 26bf1a06d038c796c2dbce21e5867088c555ee06 /docs/reference/IM1xVibrio.html | |
| parent | 0bc79f02e99d719be5dbb96ed1591d46c8373c9f (diff) | |
Maintenance prompted by email from CRAN
- Fix an improper use of 'packageVersion'
- Update .Rbuildignore
- Fix a link in the README
- Static documentation rebuilt by pkgdown::build_site()
Diffstat (limited to 'docs/reference/IM1xVibrio.html')
| -rw-r--r-- | docs/reference/IM1xVibrio.html | 375 |
1 files changed, 172 insertions, 203 deletions
diff --git a/docs/reference/IM1xVibrio.html b/docs/reference/IM1xVibrio.html index 70381ec..ae3fceb 100644 --- a/docs/reference/IM1xVibrio.html +++ b/docs/reference/IM1xVibrio.html @@ -1,70 +1,18 @@ -<!-- Generated by pkgdown: do not edit by hand --> <!DOCTYPE html> -<html lang="en"> - <head> - <meta charset="utf-8"> -<meta http-equiv="X-UA-Compatible" content="IE=edge"> -<meta name="viewport" content="width=device-width, initial-scale=1.0"> - -<title>Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in V. fischeri — IM1xVibrio • drfit</title> - - -<!-- jquery --> -<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script> -<!-- Bootstrap --> - -<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha256-916EbMg70RQy9LHiGkXzG8hSg9EdNy97GazNG/aiY1w=" crossorigin="anonymous" /> - -<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script> - -<!-- Font Awesome icons --> -<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/all.min.css" integrity="sha256-nAmazAk6vS34Xqo0BSrTb+abbtFlgsFK7NKSi6o7Y78=" crossorigin="anonymous" /> -<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/v4-shims.min.css" integrity="sha256-6qHlizsOWFskGlwVOKuns+D1nB6ssZrHQrNj1wGplHc=" crossorigin="anonymous" /> - -<!-- clipboard.js --> -<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script> - -<!-- headroom.js --> -<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/headroom.min.js" integrity="sha256-DJFC1kqIhelURkuza0AvYal5RxMtpzLjFhsnVIeuk+U=" crossorigin="anonymous"></script> -<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script> - -<!-- pkgdown --> -<link href="../pkgdown.css" rel="stylesheet"> -<script src="../pkgdown.js"></script> - - - - -<meta property="og:title" content="Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in V. fischeri — IM1xVibrio" /> -<meta property="og:description" content="This is the raw data documenting the influence of the alkyl chain length in 3 +<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in V. fischeri — IM1xVibrio • drfit</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in V. fischeri — IM1xVibrio"><meta property="og:description" content="This is the raw data documenting the influence of the alkyl chain length in 3 position on the toxicity to the marine luminescent bacteria V. fischeri. The substances are named according to the UFT naming scheme of these substances. IM13 BF4 means 1-methyl-3-propylimidazolium tetrafluoroborate, IM14 BF4 means 1-methyl-3-butylimidazolium tetrafluoroborate and - IM1-10 BF4 means 1-methyl-3-decylimidazolium tetrafluoroborate." /> -<meta name="twitter:card" content="summary" /> - - - - -<!-- mathjax --> -<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script> -<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script> - -<!--[if lt IE 9]> + IM1-10 BF4 means 1-methyl-3-decylimidazolium tetrafluoroborate."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> -<![endif]--> - - - - </head> +<![endif]--></head><body data-spy="scroll" data-target="#toc"> + - <body> <div class="container template-reference-topic"> - <header> - <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <header><div class="navbar navbar-default navbar-fixed-top" role="navigation"> <div class="container"> <div class="navbar-header"> <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false"> @@ -75,35 +23,21 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">drfit</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.7.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.7.4</span> </span> </div> <div id="navbar" class="navbar-collapse collapse"> - <ul class="nav navbar-nav"> - <li> - <a href="../index.html"> - <span class="fas fa fas fa-home fa-lg"></span> - - </a> -</li> -<li> + <ul class="nav navbar-nav"><li> <a href="../reference/index.html">Reference</a> </li> - </ul> - <ul class="nav navbar-nav navbar-right"> - - </ul> - - </div><!--/.nav-collapse --> + </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse --> </div><!--/.container --> </div><!--/.navbar --> - </header> - -<div class="row"> + </header><div class="row"> <div class="col-md-9 contents"> <div class="page-header"> <h1>Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in V. fischeri</h1> @@ -121,155 +55,190 @@ IM1-10 BF4 means 1-methyl-3-decylimidazolium tetrafluoroborate.</p> </div> - <pre class="usage"><span class='fu'><a href='https://rdrr.io/r/utils/data.html'>data</a></span>(<span class='no'>IM1xVibrio</span>)</pre> - - - <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2> + <div id="ref-usage"> + <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">IM1xVibrio</span><span class="op">)</span></span></code></pre></div> + </div> - <p>A dataframe containing the data as required for the <code><a href='drfit.html'>drfit</a></code> + <div id="format"> + <h2>Format</h2> + <p>A dataframe containing the data as required for the <code><a href="drfit.html">drfit</a></code> function. Additional columns contain the species tested (luminescent bacteria Vibrio fischeri, <code>organism</code>), and a field specifying if the data is regarded valid (<code>ok</code>).</p> - <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2> - + </div> + <div id="source"> + <h2>Source</h2> <p>Ranke J, Mölter K, Stock F, Bottin-Weber U, Poczobutt J, Hoffmann J, Ondruschka B, Filser J, Jastorff B (2004) Biological effects of imidazolium ionic liquids with varying chain lenghts in acute Vibrio fischeri and WST-1 cell viability assays. Ecotoxicology and Environmental Safety 58(3) 396-404</p> + </div> - <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> - <pre class="examples"><div class='input'> <span class='no'>rIM1xVibrio</span> <span class='kw'><-</span> <span class='fu'><a href='drfit.html'>drfit</a></span>(<span class='no'>IM1xVibrio</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, - <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>10</span>, <span class='fl'>20</span>))</div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM13 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM14 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM15 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM16 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM17 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM18 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM19 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM1-10 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>rIM1xVibrio</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>4</span>)</div><div class='output co'>#> Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma -#> 1 IM13 BF4 13 22 -5.301 4.699 probit 3.9399 3.8636 4.0160 microM 0.06303 -#> 2 IM13 BF4 13 22 -5.301 4.699 logit 3.9461 3.8708 4.0211 microM 0.06188 -#> 3 IM14 BF4 12 57 -4.301 4.699 probit 3.5442 3.5030 3.5855 microM 0.05905 -#> 4 IM14 BF4 12 57 -4.301 4.699 logit 3.5465 3.5044 3.5885 microM 0.06030 -#> 5 IM15 BF4 7 20 -0.301 4.699 probit 3.1398 3.1136 3.1662 microM 0.02695 -#> 6 IM15 BF4 7 20 -0.301 4.699 logit 3.1387 3.1118 3.1659 microM 0.02723 -#> 7 IM16 BF4 13 30 -4.301 4.699 probit 3.1804 3.1436 3.2176 microM 0.04514 -#> 8 IM16 BF4 13 30 -4.301 4.699 logit 3.1814 3.1440 3.2190 microM 0.04553 -#> 9 IM17 BF4 10 20 -1.301 4.699 probit 2.4317 2.3681 2.4951 microM 0.04773 -#> 10 IM17 BF4 10 20 -1.301 4.699 logit 2.4353 2.3672 2.5026 microM 0.05050 -#> 11 IM18 BF4 10 17 -2.301 2.699 probit 1.4015 1.3147 1.4881 microM 0.05611 -#> 12 IM18 BF4 10 17 -2.301 2.699 logit 1.4051 1.3129 1.4966 microM 0.05898 -#> 13 IM19 BF4 13 22 -5.301 2.699 probit 0.7158 0.6704 0.7592 microM 0.02956 -#> 14 IM19 BF4 13 22 -5.301 2.699 logit 0.7172 0.6689 0.7635 microM 0.03210 -#> 15 IM1-10 BF4 11 20 -6.301 2.699 probit -0.1790 -0.2569 -0.1037 microM 0.04099 -#> 16 IM1-10 BF4 11 20 -6.301 2.699 logit -0.1831 -0.2620 -0.1055 microM 0.04192 -#> a b ED50 ED50 2.5% ED50 97.5% EDx10 EDx20 -#> 1 3.9399 0.5763 8707.8956 7305.0279 1.038e+04 1.590e+03 2850.222 -#> 2 3.9461 0.3426 8832.9407 7426.2282 1.050e+04 1.561e+03 2959.147 -#> 3 3.5442 0.6561 3501.1558 3184.3196 3.851e+03 5.051e+02 981.759 -#> 4 3.5465 0.3911 3519.5779 3194.6808 3.877e+03 4.867e+02 1010.014 -#> 5 3.1398 0.5527 1379.9037 1298.9533 1.466e+03 2.701e+02 472.823 -#> 6 3.1387 0.3347 1376.4086 1293.7152 1.465e+03 2.532e+02 472.911 -#> 7 3.1804 0.4882 1515.0421 1391.8150 1.650e+03 3.588e+02 588.292 -#> 8 3.1814 0.2957 1518.4650 1393.2665 1.656e+03 3.401e+02 590.840 -#> 9 2.4317 0.6387 270.2279 233.3814 3.127e+02 4.105e+01 78.382 -#> 10 2.4353 0.3810 272.4409 232.9287 3.182e+02 3.965e+01 80.754 -#> 11 1.4015 0.8009 25.2069 20.6383 3.077e+01 2.372e+00 5.340 -#> 12 1.4051 0.4816 25.4135 20.5545 3.138e+01 2.222e+00 5.463 -#> 13 0.7158 0.6969 5.1975 4.6814 5.744e+00 6.647e-01 1.347 -#> 14 0.7172 0.4132 5.2141 4.6652 5.801e+00 6.446e-01 1.394 -#> 15 -0.1790 0.8019 0.6622 0.5534 7.876e-01 6.212e-02 0.140 -#> 16 -0.1831 0.4816 0.6560 0.5470 7.843e-01 5.738e-02 0.141</div><div class='input'> - <span class='no'>rIM1xVibrio.drc</span> <span class='kw'><-</span> <span class='fu'><a href='drcfit.html'>drcfit</a></span>(<span class='no'>IM1xVibrio</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, - <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>10</span>, <span class='fl'>20</span>))</div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM13 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM14 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM15 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM16 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM17 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM18 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM19 BF4: Fitting data...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>IM1-10 BF4: Fitting data...</span></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>rIM1xVibrio.drc</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>4</span>)</div><div class='output co'>#> Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma -#> 1 IM13 BF4 13 22 -5.301 4.699 probit 3.9399 3.8563 4.0100 microM 0.06303 -#> 2 IM13 BF4 13 22 -5.301 4.699 logit 3.9461 3.8637 4.0153 microM 0.06188 -#> 3 IM14 BF4 12 57 -4.301 4.699 probit 3.5442 3.5009 3.5836 microM 0.05905 -#> 4 IM14 BF4 12 57 -4.301 4.699 logit 3.5465 3.5023 3.5866 microM 0.06030 -#> 5 IM15 BF4 7 20 -0.301 4.699 probit 3.1398 3.1127 3.1654 microM 0.02695 -#> 6 IM15 BF4 7 20 -0.301 4.699 logit 3.1387 3.1109 3.1649 microM 0.02723 -#> 7 IM16 BF4 13 30 -4.301 4.699 probit 3.1804 3.1419 3.2158 microM 0.04514 -#> 8 IM16 BF4 13 30 -4.301 4.699 logit 3.1814 3.1424 3.2172 microM 0.04553 -#> 9 IM17 BF4 10 20 -1.301 4.699 probit 2.4317 2.3632 2.4909 microM 0.04773 -#> 10 IM17 BF4 10 20 -1.301 4.699 logit 2.4353 2.3618 2.4981 microM 0.05050 -#> 11 IM18 BF4 10 17 -2.301 2.699 probit 1.4015 1.3052 1.4803 microM 0.05611 -#> 12 IM18 BF4 10 17 -2.301 2.699 logit 1.4051 1.3023 1.4881 microM 0.05898 -#> 13 IM19 BF4 13 22 -5.301 2.699 probit 0.7158 0.6690 0.7580 microM 0.02956 -#> 14 IM19 BF4 13 22 -5.301 2.699 logit 0.7172 0.6672 0.7620 microM 0.03210 -#> 15 IM1-10 BF4 11 20 -6.301 2.699 probit -0.1790 -0.2628 -0.1088 microM 0.04099 -#> 16 IM1-10 BF4 11 20 -6.301 2.699 logit -0.1831 -0.2690 -0.1114 microM 0.04192 -#> a b ED50 ED50 2.5% ED50 97.5% EDx10 EDx10 2.5% -#> 1 8707.5571 -0.7536 8707.5571 7183.0127 1.023e+04 1.590e+03 968.72501 -#> 2 8832.8773 1.2676 8832.8773 7306.8669 1.036e+04 1.561e+03 925.39582 -#> 3 3501.1967 -0.6619 3501.1967 3168.9639 3.833e+03 5.051e+02 395.26341 -#> 4 3519.5773 1.1105 3519.5773 3179.2923 3.860e+03 4.866e+02 371.84710 -#> 5 1379.9019 -0.7858 1379.9019 1296.3162 1.463e+03 2.701e+02 233.25320 -#> 6 1376.4086 1.2976 1376.4086 1290.8397 1.462e+03 2.531e+02 215.79719 -#> 7 1515.0427 -0.8896 1515.0427 1386.3308 1.644e+03 3.588e+02 283.79434 -#> 8 1518.4644 1.4686 1518.4644 1387.9173 1.649e+03 3.401e+02 262.20564 -#> 9 270.2279 -0.6800 270.2279 230.7905 3.097e+02 4.105e+01 27.78507 -#> 10 272.4526 1.1401 272.4526 230.0588 3.148e+02 3.966e+01 25.34948 -#> 11 25.2059 -0.5423 25.2059 20.1927 3.022e+01 2.372e+00 1.29116 -#> 12 25.4145 0.9017 25.4145 20.0576 3.077e+01 2.223e+00 1.09707 -#> 13 5.1971 -0.6231 5.1971 4.6665 5.728e+00 6.646e-01 0.49235 -#> 14 5.2141 1.0511 5.2141 4.6477 5.781e+00 6.446e-01 0.46046 -#> 15 0.6622 -0.5416 0.6622 0.5460 7.783e-01 6.213e-02 0.03513 -#> 16 0.6560 0.9018 0.6560 0.5383 7.737e-01 5.738e-02 0.03163 -#> EDx10 97.5% EDx20 EDx20 2.5% EDx20 97.5% -#> 1 2.211e+03 2850.328 2.019e+03 3681.2703 -#> 2 2.196e+03 2958.988 2.092e+03 3826.1457 -#> 3 6.149e+02 981.743 8.254e+02 1138.0862 -#> 4 6.014e+02 1010.061 8.414e+02 1178.7611 -#> 5 3.070e+02 472.838 4.257e+02 520.0197 -#> 6 2.905e+02 472.906 4.239e+02 521.8955 -#> 7 4.337e+02 588.259 4.999e+02 676.6627 -#> 8 4.181e+02 590.824 4.972e+02 684.4677 -#> 9 5.431e+01 78.383 5.955e+01 97.2142 -#> 10 5.396e+01 80.763 5.975e+01 101.7713 -#> 11 3.454e+00 5.339 3.544e+00 7.1350 -#> 12 3.348e+00 5.463 3.489e+00 7.4370 -#> 13 8.369e-01 1.346 1.084e+00 1.6086 -#> 14 8.288e-01 1.394 1.106e+00 1.6832 -#> 15 8.912e-02 0.140 9.501e-02 0.1850 -#> 16 8.314e-02 0.141 9.588e-02 0.1862</div></pre> - </div> - <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> - <h2>Contents</h2> - <ul class="nav nav-pills nav-stacked"> - <li><a href="#format">Format</a></li> - <li><a href="#source">Source</a></li> - <li><a href="#examples">Examples</a></li> - </ul> - + <div id="ref-examples"> + <h2>Examples</h2> + <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span> <span class="va">rIM1xVibrio</span> <span class="op"><-</span> <span class="fu"><a href="drfit.html">drfit</a></span><span class="op">(</span><span class="va">IM1xVibrio</span>, logit <span class="op">=</span> <span class="cn">TRUE</span>, chooseone <span class="op">=</span> <span class="cn">FALSE</span>,</span></span> +<span class="r-in"><span> showED50 <span class="op">=</span> <span class="cn">TRUE</span>, EDx <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">10</span>, <span class="fl">20</span><span class="op">)</span><span class="op">)</span></span></span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM13 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM14 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM15 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM16 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM17 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM18 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM19 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM1-10 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">rIM1xVibrio</span>, digits <span class="op">=</span> <span class="fl">4</span><span class="op">)</span></span></span> +<span class="r-out co"><span class="r-pr">#></span> Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma</span> +<span class="r-out co"><span class="r-pr">#></span> 1 IM13 BF4 13 22 -5.301 4.699 probit 3.9399 3.8636 4.0160 microM 0.06303</span> +<span class="r-out co"><span class="r-pr">#></span> 2 IM13 BF4 13 22 -5.301 4.699 logit 3.9461 3.8708 4.0211 microM 0.06188</span> +<span class="r-out co"><span class="r-pr">#></span> 3 IM14 BF4 12 57 -4.301 4.699 probit 3.5442 3.5030 3.5855 microM 0.05905</span> +<span class="r-out co"><span class="r-pr">#></span> 4 IM14 BF4 12 57 -4.301 4.699 logit 3.5465 3.5044 3.5885 microM 0.06030</span> +<span class="r-out co"><span class="r-pr">#></span> 5 IM15 BF4 7 20 -0.301 4.699 probit 3.1398 3.1136 3.1662 microM 0.02695</span> +<span class="r-out co"><span class="r-pr">#></span> 6 IM15 BF4 7 20 -0.301 4.699 logit 3.1387 3.1118 3.1659 microM 0.02723</span> +<span class="r-out co"><span class="r-pr">#></span> 7 IM16 BF4 13 30 -4.301 4.699 probit 3.1804 3.1436 3.2176 microM 0.04514</span> +<span class="r-out co"><span class="r-pr">#></span> 8 IM16 BF4 13 30 -4.301 4.699 logit 3.1814 3.1440 3.2190 microM 0.04553</span> +<span class="r-out co"><span class="r-pr">#></span> 9 IM17 BF4 10 20 -1.301 4.699 probit 2.4317 2.3681 2.4951 microM 0.04773</span> +<span class="r-out co"><span class="r-pr">#></span> 10 IM17 BF4 10 20 -1.301 4.699 logit 2.4353 2.3672 2.5026 microM 0.05050</span> +<span class="r-out co"><span class="r-pr">#></span> 11 IM18 BF4 10 17 -2.301 2.699 probit 1.4015 1.3147 1.4881 microM 0.05611</span> +<span class="r-out co"><span class="r-pr">#></span> 12 IM18 BF4 10 17 -2.301 2.699 logit 1.4051 1.3129 1.4966 microM 0.05898</span> +<span class="r-out co"><span class="r-pr">#></span> 13 IM19 BF4 13 22 -5.301 2.699 probit 0.7158 0.6704 0.7592 microM 0.02956</span> +<span class="r-out co"><span class="r-pr">#></span> 14 IM19 BF4 13 22 -5.301 2.699 logit 0.7172 0.6689 0.7635 microM 0.03210</span> +<span class="r-out co"><span class="r-pr">#></span> 15 IM1-10 BF4 11 20 -6.301 2.699 probit -0.1790 -0.2569 -0.1037 microM 0.04099</span> +<span class="r-out co"><span class="r-pr">#></span> 16 IM1-10 BF4 11 20 -6.301 2.699 logit -0.1831 -0.2620 -0.1055 microM 0.04192</span> +<span class="r-out co"><span class="r-pr">#></span> a b ED50 ED50 2.5% ED50 97.5% EDx10 EDx20</span> +<span class="r-out co"><span class="r-pr">#></span> 1 3.9399 0.5763 8707.8956 7305.0279 1.038e+04 1.590e+03 2850.222</span> +<span class="r-out co"><span class="r-pr">#></span> 2 3.9461 0.3426 8832.9407 7426.2282 1.050e+04 1.561e+03 2959.147</span> +<span class="r-out co"><span class="r-pr">#></span> 3 3.5442 0.6561 3501.1558 3184.3196 3.851e+03 5.051e+02 981.759</span> +<span class="r-out co"><span class="r-pr">#></span> 4 3.5465 0.3911 3519.5779 3194.6808 3.877e+03 4.867e+02 1010.014</span> +<span class="r-out co"><span class="r-pr">#></span> 5 3.1398 0.5527 1379.9037 1298.9533 1.466e+03 2.701e+02 472.823</span> +<span class="r-out co"><span class="r-pr">#></span> 6 3.1387 0.3347 1376.4086 1293.7152 1.465e+03 2.532e+02 472.911</span> +<span class="r-out co"><span class="r-pr">#></span> 7 3.1804 0.4882 1515.0421 1391.8150 1.650e+03 3.588e+02 588.292</span> +<span class="r-out co"><span class="r-pr">#></span> 8 3.1814 0.2957 1518.4650 1393.2665 1.656e+03 3.401e+02 590.840</span> +<span class="r-out co"><span class="r-pr">#></span> 9 2.4317 0.6387 270.2279 233.3814 3.127e+02 4.105e+01 78.382</span> +<span class="r-out co"><span class="r-pr">#></span> 10 2.4353 0.3810 272.4409 232.9287 3.182e+02 3.965e+01 80.754</span> +<span class="r-out co"><span class="r-pr">#></span> 11 1.4015 0.8009 25.2069 20.6383 3.077e+01 2.372e+00 5.340</span> +<span class="r-out co"><span class="r-pr">#></span> 12 1.4051 0.4816 25.4135 20.5545 3.138e+01 2.222e+00 5.463</span> +<span class="r-out co"><span class="r-pr">#></span> 13 0.7158 0.6969 5.1975 4.6814 5.744e+00 6.647e-01 1.347</span> +<span class="r-out co"><span class="r-pr">#></span> 14 0.7172 0.4132 5.2141 4.6652 5.801e+00 6.446e-01 1.394</span> +<span class="r-out co"><span class="r-pr">#></span> 15 -0.1790 0.8019 0.6622 0.5534 7.876e-01 6.212e-02 0.140</span> +<span class="r-out co"><span class="r-pr">#></span> 16 -0.1831 0.4816 0.6560 0.5470 7.843e-01 5.738e-02 0.141</span> +<span class="r-in"><span></span></span> +<span class="r-in"><span> <span class="va">rIM1xVibrio.drc</span> <span class="op"><-</span> <span class="fu"><a href="drcfit.html">drcfit</a></span><span class="op">(</span><span class="va">IM1xVibrio</span>, logit <span class="op">=</span> <span class="cn">TRUE</span>, chooseone <span class="op">=</span> <span class="cn">FALSE</span>,</span></span> +<span class="r-in"><span> showED50 <span class="op">=</span> <span class="cn">TRUE</span>, EDx <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">10</span>, <span class="fl">20</span><span class="op">)</span><span class="op">)</span></span></span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM13 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM14 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM15 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM16 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM17 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM18 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM19 BF4: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> IM1-10 BF4: Fitting data...</span> +<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">rIM1xVibrio.drc</span>, digits <span class="op">=</span> <span class="fl">4</span><span class="op">)</span></span></span> +<span class="r-out co"><span class="r-pr">#></span> Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma</span> +<span class="r-out co"><span class="r-pr">#></span> 1 IM13 BF4 13 22 -5.301 4.699 probit 3.9399 3.8563 4.0100 microM 0.06303</span> +<span class="r-out co"><span class="r-pr">#></span> 2 IM13 BF4 13 22 -5.301 4.699 logit 3.9461 3.8637 4.0153 microM 0.06188</span> +<span class="r-out co"><span class="r-pr">#></span> 3 IM14 BF4 12 57 -4.301 4.699 probit 3.5442 3.5009 3.5836 microM 0.05905</span> +<span class="r-out co"><span class="r-pr">#></span> 4 IM14 BF4 12 57 -4.301 4.699 logit 3.5465 3.5023 3.5866 microM 0.06030</span> +<span class="r-out co"><span class="r-pr">#></span> 5 IM15 BF4 7 20 -0.301 4.699 probit 3.1398 3.1127 3.1654 microM 0.02695</span> +<span class="r-out co"><span class="r-pr">#></span> 6 IM15 BF4 7 20 -0.301 4.699 logit 3.1387 3.1109 3.1649 microM 0.02723</span> +<span class="r-out co"><span class="r-pr">#></span> 7 IM16 BF4 13 30 -4.301 4.699 probit 3.1804 3.1419 3.2158 microM 0.04514</span> +<span class="r-out co"><span class="r-pr">#></span> 8 IM16 BF4 13 30 -4.301 4.699 logit 3.1814 3.1424 3.2172 microM 0.04553</span> +<span class="r-out co"><span class="r-pr">#></span> 9 IM17 BF4 10 20 -1.301 4.699 probit 2.4317 2.3632 2.4909 microM 0.04773</span> +<span class="r-out co"><span class="r-pr">#></span> 10 IM17 BF4 10 20 -1.301 4.699 logit 2.4353 2.3618 2.4981 microM 0.05050</span> +<span class="r-out co"><span class="r-pr">#></span> 11 IM18 BF4 10 17 -2.301 2.699 probit 1.4015 1.3052 1.4803 microM 0.05611</span> +<span class="r-out co"><span class="r-pr">#></span> 12 IM18 BF4 10 17 -2.301 2.699 logit 1.4051 1.3023 1.4881 microM 0.05898</span> +<span class="r-out co"><span class="r-pr">#></span> 13 IM19 BF4 13 22 -5.301 2.699 probit 0.7158 0.6690 0.7580 microM 0.02956</span> +<span class="r-out co"><span class="r-pr">#></span> 14 IM19 BF4 13 22 -5.301 2.699 logit 0.7172 0.6672 0.7620 microM 0.03210</span> +<span class="r-out co"><span class="r-pr">#></span> 15 IM1-10 BF4 11 20 -6.301 2.699 probit -0.1790 -0.2628 -0.1088 microM 0.04099</span> +<span class="r-out co"><span class="r-pr">#></span> 16 IM1-10 BF4 11 20 -6.301 2.699 logit -0.1831 -0.2690 -0.1114 microM 0.04192</span> +<span class="r-out co"><span class="r-pr">#></span> a b ED50 ED50 2.5% ED50 97.5% EDx10 EDx10 2.5%</span> +<span class="r-out co"><span class="r-pr">#></span> 1 8707.5571 -0.7536 8707.5571 7183.0127 1.023e+04 1.590e+03 968.72497</span> +<span class="r-out co"><span class="r-pr">#></span> 2 8832.8773 1.2676 8832.8773 7306.8669 1.036e+04 1.561e+03 925.39582</span> +<span class="r-out co"><span class="r-pr">#></span> 3 3501.1967 -0.6619 3501.1967 3168.9639 3.833e+03 5.051e+02 395.26341</span> +<span class="r-out co"><span class="r-pr">#></span> 4 3519.5773 1.1105 3519.5773 3179.2923 3.860e+03 4.866e+02 371.84710</span> +<span class="r-out co"><span class="r-pr">#></span> 5 1379.9019 -0.7858 1379.9019 1296.3162 1.463e+03 2.701e+02 233.25320</span> +<span class="r-out co"><span class="r-pr">#></span> 6 1376.4086 1.2976 1376.4086 1290.8397 1.462e+03 2.531e+02 215.79719</span> +<span class="r-out co"><span class="r-pr">#></span> 7 1515.0427 -0.8896 1515.0427 1386.3308 1.644e+03 3.588e+02 283.79434</span> +<span class="r-out co"><span class="r-pr">#></span> 8 1518.4644 1.4686 1518.4644 1387.9173 1.649e+03 3.401e+02 262.20564</span> +<span class="r-out co"><span class="r-pr">#></span> 9 270.2279 -0.6800 270.2279 230.7905 3.097e+02 4.105e+01 27.78507</span> +<span class="r-out co"><span class="r-pr">#></span> 10 272.4526 1.1401 272.4526 230.0588 3.148e+02 3.966e+01 25.34948</span> +<span class="r-out co"><span class="r-pr">#></span> 11 25.2059 -0.5423 25.2059 20.1927 3.022e+01 2.372e+00 1.29116</span> +<span class="r-out co"><span class="r-pr">#></span> 12 25.4145 0.9017 25.4145 20.0576 3.077e+01 2.223e+00 1.09707</span> +<span class="r-out co"><span class="r-pr">#></span> 13 5.1971 -0.6231 5.1971 4.6665 5.728e+00 6.646e-01 0.49235</span> +<span class="r-out co"><span class="r-pr">#></span> 14 5.2141 1.0511 5.2141 4.6477 5.781e+00 6.446e-01 0.46046</span> +<span class="r-out co"><span class="r-pr">#></span> 15 0.6622 -0.5416 0.6622 0.5460 7.783e-01 6.213e-02 0.03513</span> +<span class="r-out co"><span class="r-pr">#></span> 16 0.6560 0.9018 0.6560 0.5383 7.737e-01 5.738e-02 0.03163</span> +<span class="r-out co"><span class="r-pr">#></span> EDx10 97.5% EDx20 EDx20 2.5% EDx20 97.5%</span> +<span class="r-out co"><span class="r-pr">#></span> 1 2.211e+03 2850.328 2.019e+03 3681.2704</span> +<span class="r-out co"><span class="r-pr">#></span> 2 2.196e+03 2958.988 2.092e+03 3826.1457</span> +<span class="r-out co"><span class="r-pr">#></span> 3 6.149e+02 981.743 8.254e+02 1138.0862</span> +<span class="r-out co"><span class="r-pr">#></span> 4 6.014e+02 1010.061 8.414e+02 1178.7611</span> +<span class="r-out co"><span class="r-pr">#></span> 5 3.070e+02 472.838 4.257e+02 520.0197</span> +<span class="r-out co"><span class="r-pr">#></span> 6 2.905e+02 472.906 4.239e+02 521.8955</span> +<span class="r-out co"><span class="r-pr">#></span> 7 4.337e+02 588.259 4.999e+02 676.6627</span> +<span class="r-out co"><span class="r-pr">#></span> 8 4.181e+02 590.824 4.972e+02 684.4677</span> +<span class="r-out co"><span class="r-pr">#></span> 9 5.431e+01 78.383 5.955e+01 97.2142</span> +<span class="r-out co"><span class="r-pr">#></span> 10 5.396e+01 80.763 5.975e+01 101.7713</span> +<span class="r-out co"><span class="r-pr">#></span> 11 3.454e+00 5.339 3.544e+00 7.1350</span> +<span class="r-out co"><span class="r-pr">#></span> 12 3.348e+00 5.463 3.489e+00 7.4370</span> +<span class="r-out co"><span class="r-pr">#></span> 13 8.369e-01 1.346 1.084e+00 1.6086</span> +<span class="r-out co"><span class="r-pr">#></span> 14 8.288e-01 1.394 1.106e+00 1.6832</span> +<span class="r-out co"><span class="r-pr">#></span> 15 8.912e-02 0.140 9.501e-02 0.1850</span> +<span class="r-out co"><span class="r-pr">#></span> 16 8.314e-02 0.141 9.588e-02 0.1862</span> +</code></pre></div> + </div> </div> + <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> + <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2> + </nav></div> </div> - <footer> - <div 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