Maintenance prompted by email from CRAN

- Fix an improper use of 'packageVersion' - Update .Rbuildignore - Fix a link in the README - Static documentation rebuilt by pkgdown::build_site()
author: Johannes Ranke <jranke@uni-bremen.de> 2023-07-21 08:24:12 +0200
committer: Johannes Ranke <jranke@uni-bremen.de> 2023-07-21 08:32:32 +0200
commit: d04bac001217855b4e9a1490a35bef3325441b55 (patch)
tree: 26bf1a06d038c796c2dbce21e5867088c555ee06 /docs/reference/checkcontrols.html
parent: 0bc79f02e99d719be5dbb96ed1591d46c8373c9f (diff)
1 files changed, 71 insertions, 145 deletions
diff --git a/docs/reference/checkcontrols.html b/docs/reference/checkcontrols.html
index 6fa239b..0228a63 100644
--- a/docs/reference/checkcontrols.html
+++ b/docs/reference/checkcontrols.html
@@ -1,65 +1,13 @@
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 <!DOCTYPE html>
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-  <meta charset="utf-8">
-<meta http-equiv="X-UA-Compatible" content="IE=edge">
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-<title>Check raw data from range of plates or experiments — checkcontrols • drfit</title>
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-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/headroom.min.js" integrity="sha256-DJFC1kqIhelURkuza0AvYal5RxMtpzLjFhsnVIeuk+U=" crossorigin="anonymous"></script>
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-<meta property="og:title" content="Check raw data from range of plates or experiments — checkcontrols" />
-<meta property="og:description" content="Report control data from a specified range of microtiter plates or
-  experiments from a specified database." />
-<meta name="twitter:card" content="summary" />
-
-
-
-
-<!-- mathjax -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
-<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
-
-<!--[if lt IE 9]>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Check raw data from range of plates or experiments — checkcontrols • drfit</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Check raw data from range of plates or experiments — checkcontrols"><meta property="og:description" content="Report control data from a specified range of microtiter plates or
+  experiments from a specified database."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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 <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
-<![endif]-->
-
-
-
-  </head>
+<![endif]--></head><body data-spy="scroll" data-target="#toc">
+    
 
-  <body>
     <div class="container template-reference-topic">
-      <header>
-      <div class="navbar navbar-default navbar-fixed-top" role="navigation">
+      <header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
   <div class="container">
     <div class="navbar-header">
       <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
@@ -70,35 +18,21 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">drfit</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.7.3</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.7.4</span>
       </span>
     </div>
 
     <div id="navbar" class="navbar-collapse collapse">
-      <ul class="nav navbar-nav">
-        <li>
-  <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
-     
-  </a>
-</li>
-<li>
+      <ul class="nav navbar-nav"><li>
   <a href="../reference/index.html">Reference</a>
 </li>
-      </ul>
-      <ul class="nav navbar-nav navbar-right">
-        
-      </ul>
-      
-    </div><!--/.nav-collapse -->
+      </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
 
       
 
-      </header>
-
-<div class="row">
+      </header><div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Check raw data from range of plates or experiments</h1>
@@ -111,96 +45,88 @@
   experiments from a specified database.</p>
     </div>
 
-    <pre class="usage"><span class='fu'>checkcontrols</span>(<span class='kw'>last</span> <span class='kw'>=</span> <span class='fl'>10</span>, <span class='kw'>id</span> <span class='kw'>=</span> <span class='kw'>NULL</span>,
-                <span class='kw'>db</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"cytotox"</span>, <span class='st'>"enzymes"</span>, <span class='st'>"ecotox"</span>),
-                <span class='kw'>celltype</span> <span class='kw'>=</span> <span class='st'>"IPC-81"</span>, <span class='kw'>enzymetype</span> <span class='kw'>=</span> <span class='st'>"AChE"</span>,
-                <span class='kw'>organism</span> <span class='kw'>=</span> <span class='st'>"Vibrio fischeri"</span>,
-                <span class='kw'>endpoint</span> <span class='kw'>=</span> <span class='st'>"%"</span>, <span class='kw'>qcc</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"R"</span>, <span class='st'>"xbar"</span>))</pre>
-
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
-    <table class="ref-arguments">
-    <colgroup><col class="name" /><col class="desc" /></colgroup>
-    <tr>
-      <th>last</th>
-      <td><p>If <code>id</code> is not specified, this argument specifies the number of
+    <div id="ref-usage">
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">checkcontrols</span><span class="op">(</span>last <span class="op">=</span> <span class="fl">10</span>, id <span class="op">=</span> <span class="cn">NULL</span>, </span>
+<span>                db <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"cytotox"</span>, <span class="st">"enzymes"</span>, <span class="st">"ecotox"</span><span class="op">)</span>,</span>
+<span>                celltype <span class="op">=</span> <span class="st">"IPC-81"</span>, enzymetype <span class="op">=</span> <span class="st">"AChE"</span>, </span>
+<span>                organism <span class="op">=</span> <span class="st">"Vibrio fischeri"</span>,</span>
+<span>                endpoint <span class="op">=</span> <span class="st">"%"</span>, qcc <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"R"</span>, <span class="st">"xbar"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
+    </div>
+
+    <div id="arguments">
+    <h2>Arguments</h2>
+    <dl><dt>last</dt>
+<dd><p>If <code>id</code> is not specified, this argument specifies the number of
     plates/experiments that should be evaluated. The plates/experiments with
-    the hightest numbers are selected.</p></td>
-    </tr>
-    <tr>
-      <th>id</th>
-      <td><p>A numeric vector of integers, specifying the plates or experiments explicitly.</p></td>
-    </tr>
-    <tr>
-      <th>db</th>
-      <td><p>The database to be used. Currently, the microtiter plate databases
+    the hightest numbers are selected.</p></dd>
+
+  <dt>id</dt>
+<dd><p>A numeric vector of integers, specifying the plates or experiments explicitly.</p></dd>
+
+  <dt>db</dt>
+<dd><p>The database to be used. Currently, the microtiter plate databases
     "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are
-    supported, as well as the database of ecotoxicity experiments "ecotox".</p></td>
-    </tr>
-    <tr>
-      <th>celltype</th>
-      <td><p>Only important if database "cytotox" is used.  Data for
-    "IPC-81", "C6", "NB4", "HeLa", "Jurkat" and "U937" are available.</p></td>
-    </tr>
-    <tr>
-      <th>enzymetype</th>
-      <td><p>Only important if database "enzymes" is used.
-    Data for "AChE", "GR" and "GST" are available.</p></td>
-    </tr>
-    <tr>
-      <th>organism</th>
-      <td><p>Only important if database "ecotox" is used.</p></td>
-    </tr>
-    <tr>
-      <th>endpoint</th>
-      <td><p>The endpoint that should be used for selecting the data. Only important if
-    the database "ecotox" is used. Defaults to "%".</p></td>
-    </tr>
-    <tr>
-      <th>qcc</th>
-      <td><p>The type of quality control charts to be plotted. By default, an R chart
-    (showing ranges of control values within plates/experiments), and an
-    xbar chart (showing means) are generated.</p></td>
-    </tr>
-    </table>
+    supported, as well as the database of ecotoxicity experiments "ecotox".</p></dd>
 
-    <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
+  <dt>celltype</dt>
+<dd><p>Only important if database "cytotox" is used.  Data for
+    "IPC-81", "C6", "NB4", "HeLa", "Jurkat" and "U937" are available.</p></dd>
 
-    <p>The function lists a report and shows two graphs.</p>
+  <dt>enzymetype</dt>
+<dd><p>Only important if database "enzymes" is used.
+    Data for "AChE", "GR" and "GST" are available.</p></dd>
 
-    <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='kw'>if</span> (<span class='fl'>FALSE</span>) <span class='fu'>checkcontrols</span>(<span class='fl'>15</span>)</div></pre>
-  </div>
-  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
-    <h2>Contents</h2>
-    <ul class="nav nav-pills nav-stacked">
-      <li><a href="#arguments">Arguments</a></li>
-      <li><a href="#value">Value</a></li>
-      <li><a href="#examples">Examples</a></li>
-    </ul>
+  <dt>organism</dt>
+<dd><p>Only important if database "ecotox" is used.</p></dd>
 
+  <dt>endpoint</dt>
+<dd><p>The endpoint that should be used for selecting the data. Only important if
+    the database "ecotox" is used. Defaults to "%".</p></dd>
+
+  <dt>qcc</dt>
+<dd><p>The type of quality control charts to be plotted. By default, an R chart
+    (showing ranges of control values within plates/experiments), and an
+    xbar chart (showing means) are generated.</p></dd>
+
+</dl></div>
+    <div id="value">
+    <h2>Value</h2>
+    
+
+<p>The function lists a report and shows two graphs.</p>
+    </div>
+    <div id="author">
     <h2>Author</h2>
     <p>Johannes Ranke
-  <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a></p>
+  <a href="mailto:jranke@uni-bremen.de">jranke@uni-bremen.de</a></p>
+    </div>
+
+    <div id="ref-examples">
+    <h2>Examples</h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="fu">checkcontrols</span><span class="op">(</span><span class="fl">15</span><span class="op">)</span></span></span>
+</code></pre></div>
+    </div>
   </div>
+  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+    <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
+    </nav></div>
 </div>
 
 
-      <footer>
-      <div class="copyright">
-  <p>Developed by Johannes Ranke.</p>
+      <footer><div class="copyright">
+  <p></p><p>Developed by Johannes Ranke.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
 </div>
 
-      </footer>
-   </div>
+      </footer></div>
 
   
 
 
-  </body>
-</html>
+  
 
+  </body></html>
author	Johannes Ranke <jranke@uni-bremen.de>	2023-07-21 08:24:12 +0200
committer	Johannes Ranke <jranke@uni-bremen.de>	2023-07-21 08:32:32 +0200
commit	d04bac001217855b4e9a1490a35bef3325441b55 (patch)
tree	26bf1a06d038c796c2dbce21e5867088c555ee06 /docs/reference/checkcontrols.html
parent	0bc79f02e99d719be5dbb96ed1591d46c8373c9f (diff)