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authorJohannes Ranke <jranke@uni-bremen.de>2023-07-21 08:24:12 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2023-07-21 08:32:32 +0200
commitd04bac001217855b4e9a1490a35bef3325441b55 (patch)
tree26bf1a06d038c796c2dbce21e5867088c555ee06 /docs/reference/checkexperiment.html
parent0bc79f02e99d719be5dbb96ed1591d46c8373c9f (diff)
Maintenance prompted by email from CRAN
- Fix an improper use of 'packageVersion' - Update .Rbuildignore - Fix a link in the README - Static documentation rebuilt by pkgdown::build_site()
Diffstat (limited to 'docs/reference/checkexperiment.html')
-rw-r--r--docs/reference/checkexperiment.html186
1 files changed, 58 insertions, 128 deletions
diff --git a/docs/reference/checkexperiment.html b/docs/reference/checkexperiment.html
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+++ b/docs/reference/checkexperiment.html
@@ -1,65 +1,13 @@
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- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.7.3</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.7.4</span>
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<h1>Check raw data from a specified experiment or microtiter plate</h1>
@@ -111,78 +45,74 @@
specified database, box plot controls, and plot the dose-response data.</p>
</div>
- <pre class="usage"><span class='fu'>checkplate</span>(<span class='no'>id</span>, <span class='kw'>db</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"cytotox"</span>, <span class='st'>"enzymes"</span>))
- <span class='fu'>checkexperiment</span>(<span class='no'>id</span>, <span class='kw'>db</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"ecotox"</span>, <span class='st'>"cytotox"</span>, <span class='st'>"enzymes"</span>), <span class='kw'>endpoint</span> <span class='kw'>=</span> <span class='st'>"%"</span>,
- <span class='kw'>whereClause</span> <span class='kw'>=</span> <span class='st'>"1"</span>)</pre>
-
- <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
- <table class="ref-arguments">
- <colgroup><col class="name" /><col class="desc" /></colgroup>
- <tr>
- <th>id</th>
- <td><p>The id of the experiment or the plate identifying it within the database.</p></td>
- </tr>
- <tr>
- <th>db</th>
- <td><p>The database to be used. Currently, the microtiter plate databases
- "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are
- supported, as well as the database of ecotoxicity experiments "ecotox".</p></td>
- </tr>
- <tr>
- <th>endpoint</th>
- <td><p>The endpoint that should be used for selecting the data. Only important if
- the database "ecotox" is used. Defaults to "%".</p></td>
- </tr>
- <tr>
- <th>whereClause</th>
- <td><p>With this argument, additional conditions for the SQL query can be set,
- e.g. "duration = 48" (i.e. "Only retrieve data with duration 48"). The
- default is 1 (in SQL syntax this means TRUE).</p></td>
- </tr>
- </table>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">checkplate</span><span class="op">(</span><span class="va">id</span>, db <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"cytotox"</span>, <span class="st">"enzymes"</span><span class="op">)</span><span class="op">)</span></span>
+<span> <span class="fu">checkexperiment</span><span class="op">(</span><span class="va">id</span>, db <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"ecotox"</span>, <span class="st">"cytotox"</span>, <span class="st">"enzymes"</span><span class="op">)</span>, endpoint <span class="op">=</span> <span class="st">"%"</span>, </span>
+<span> whereClause <span class="op">=</span> <span class="st">"1"</span><span class="op">)</span></span></code></pre></div>
+ </div>
- <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
+ <div id="arguments">
+ <h2>Arguments</h2>
+ <dl><dt>id</dt>
+<dd><p>The id of the experiment or the plate identifying it within the database.</p></dd>
- <p>The function lists a report and shows two graphs.</p>
+ <dt>db</dt>
+<dd><p>The database to be used. Currently, the microtiter plate databases
+ "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are
+ supported, as well as the database of ecotoxicity experiments "ecotox".</p></dd>
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='co'># Check plate number 3 in the cytotox database</span>
-<span class='kw'>if</span> (<span class='fl'>FALSE</span>) <span class='fu'>checkplate</span>(<span class='fl'>3</span>)
+ <dt>endpoint</dt>
+<dd><p>The endpoint that should be used for selecting the data. Only important if
+ the database "ecotox" is used. Defaults to "%".</p></dd>
-<span class='co'># Check data from experiment 1517 with duration 48 hours</span>
-<span class='kw'>if</span> (<span class='fl'>FALSE</span>) <span class='fu'>checkexperiment</span>(<span class='fl'>1517</span>, <span class='kw'>whereClause</span> <span class='kw'>=</span> <span class='st'>"duration = 48"</span>)</div></pre>
- </div>
- <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
- <h2>Contents</h2>
- <ul class="nav nav-pills nav-stacked">
- <li><a href="#arguments">Arguments</a></li>
- <li><a href="#value">Value</a></li>
- <li><a href="#examples">Examples</a></li>
- </ul>
+ <dt>whereClause</dt>
+<dd><p>With this argument, additional conditions for the SQL query can be set,
+ e.g. "duration = 48" (i.e. "Only retrieve data with duration 48"). The
+ default is 1 (in SQL syntax this means TRUE).</p></dd>
+</dl></div>
+ <div id="value">
+ <h2>Value</h2>
+
+
+<p>The function lists a report and shows two graphs.</p>
+ </div>
+ <div id="author">
<h2>Author</h2>
<p>Johannes Ranke
- <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a></p>
+ <a href="mailto:jranke@uni-bremen.de">jranke@uni-bremen.de</a></p>
+ </div>
+
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co"># Check plate number 3 in the cytotox database</span></span></span>
+<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="fu">checkplate</span><span class="op">(</span><span class="fl">3</span><span class="op">)</span></span></span>
+<span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="co"># Check data from experiment 1517 with duration 48 hours</span></span></span>
+<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="fu">checkexperiment</span><span class="op">(</span><span class="fl">1517</span>, whereClause <span class="op">=</span> <span class="st">"duration = 48"</span><span class="op">)</span></span></span>
+</code></pre></div>
+ </div>
</div>
+ <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+ <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
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+ <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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