Update static documentation

author: Johannes Ranke <jranke@uni-bremen.de> 2020-02-07 07:50:11 +0100
committer: Johannes Ranke <jranke@uni-bremen.de> 2020-02-07 07:50:11 +0100
commit: fbdd2459014999b89f65678b3e0c348f91e27167 (patch)
tree: b15408520a5ff1744a2ba8c008d8e0d793fd3c09 /docs/reference/drcfit.html
parent: d894b16fd245c33d458e3036b711be78e70053bd (diff)
1 files changed, 36 insertions, 36 deletions
diff --git a/docs/reference/drcfit.html b/docs/reference/drcfit.html
index b4c299b..1930a24 100644
--- a/docs/reference/drcfit.html
+++ b/docs/reference/drcfit.html
@@ -1,6 +1,6 @@
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+<html lang="en">
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 <meta http-equiv="X-UA-Compatible" content="IE=edge">
@@ -8,21 +8,25 @@
 
 <title>Fit dose-response models using the drc package — drcfit • drfit</title>
 
+
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@@ -30,16 +34,18 @@
 
 
 
-<meta property="og:title" content="Fit dose-response models using the drc package — drcfit" />
 
+<meta property="og:title" content="Fit dose-response models using the drc package — drcfit" />
 <meta property="og:description" content="Fit dose-response relationships to dose-response data and calculate
   biometric results for (eco)toxicity evaluation using the drc package" />
 <meta name="twitter:card" content="summary" />
 
 
 
+
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+<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
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@@ -47,6 +53,7 @@
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@@ -55,14 +62,15 @@
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+      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
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-        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.2</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.7.3</span>
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@@ -70,7 +78,7 @@
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-    <span class="fa fa-home fa-lg"></span>
+    <span class="fas fa fas fa-home fa-lg"></span>
      
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 </li>
@@ -78,7 +86,6 @@
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
-      
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
@@ -88,6 +95,7 @@
 </div><!--/.navbar -->
 
       
+
       </header>
 
 <div class="row">
@@ -99,16 +107,14 @@
     </div>
 
     <div class="ref-description">
-    
     <p>Fit dose-response relationships to dose-response data and calculate
   biometric results for (eco)toxicity evaluation using the drc package</p>
-    
     </div>
 
     <pre class="usage"><span class='fu'>drcfit</span>(<span class='no'>data</span>, <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>probit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
   <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>level</span> <span class='kw'>=</span> <span class='fl'>0.95</span>,
   <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='kw'>NULL</span>)</pre>
-    
+
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
@@ -136,7 +142,7 @@
     <tr>
       <th>logit</th>
       <td><p>A boolean defining if cumulative density curves of logistic distributions
-    <code>plogis</code> are fitted to the decadic logarithm of the dose.
+    <code><a href='https://rdrr.io/r/stats/Logistic.html'>plogis</a></code> are fitted to the decadic logarithm of the dose.
     Default is FALSE.
     Again the parameter definitions used in the model are different to the
     ones used in <code><a href='drfit.html'>drfit</a></code>. Parameter e from <code>LL.2</code> is listed
@@ -179,11 +185,11 @@
     scale (not log scale) is included in the output.</p></td>
     </tr>
     </table>
-    
+
     <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
 
     <p>A dataframe with the attribute <code>models</code> holding a list of the fitted
-  dose-response models of class <code>nls</code>. The dataframe has at least
+  dose-response models of class <code><a href='https://rdrr.io/r/stats/nls.html'>nls</a></code>. The dataframe has at least
   one line for each substance.</p>
 <p>The following variables are in the dataframe:</p>
 <dt>Substance</dt><dd><p>The name of the substance</p></dd>
@@ -222,24 +228,21 @@
   the corresponding dose levels are given in addition, together with their
   confidence intervals as calculated by ED from the drc package.
 
-    
     <h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2>
 
     <p>There is a demo for each dataset that can be accessed by
-  <code>demo(dataset)</code></p>
-    
+  <code><a href='https://rdrr.io/r/utils/demo.html'>demo(dataset)</a></code></p>
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
     <div class='dont-index'><p>Further examples are given in help pages to the datasets
   <code><a href='antifoul.html'>antifoul</a></code>, <code><a href='IM1xIPC81.html'>IM1xIPC81</a></code> and
   <code><a href='IM1xVibrio.html'>IM1xVibrio</a></code>.</p></div>
-    
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='fu'>data</span>(<span class='no'>antifoul</span>)
-<span class='no'>r</span> <span class='kw'>&lt;-</span> <span class='fu'>drcfit</span>(<span class='no'>antifoul</span>, <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>5</span>, <span class='fl'>10</span>, <span class='fl'>20</span>))</div><div class='output co'>#&gt; <span class='message'></span>
+    <pre class="examples"><div class='input'><span class='fu'><a href='https://rdrr.io/r/utils/data.html'>data</a></span>(<span class='no'>antifoul</span>)
+<span class='no'>r</span> <span class='kw'>&lt;-</span> <span class='fu'>drcfit</span>(<span class='no'>antifoul</span>, <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>5</span>, <span class='fl'>10</span>, <span class='fl'>20</span>))</div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
-#&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='input'><span class='fu'>format</span>(<span class='no'>r</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>2</span>)</div><div class='output co'>#&gt;      Substance ndl   n  lld lhd  mtype logED50  2.5%  97.5%   unit sigma    a
+#&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/format.html'>format</a></span>(<span class='no'>r</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>2</span>)</div><div class='output co'>#&gt;      Substance ndl   n  lld lhd  mtype logED50  2.5%  97.5%   unit sigma    a
 #&gt; 1          TBT  38 135 -2.7 2.4 probit   -0.16 -0.28 -0.072 microM  0.19 0.68
 #&gt; 2 Zn Pyrithion  27  81 -2.1 2.0 probit   -0.40 -0.52 -0.303 microM  0.23 0.40
 #&gt;       b ED50 ED50 2.5% ED50 97.5%  EDx5 EDx5 2.5% EDx5 97.5% EDx10 EDx10 2.5%
@@ -253,32 +256,27 @@
     <h2>Contents</h2>
     <ul class="nav nav-pills nav-stacked">
       <li><a href="#arguments">Arguments</a></li>
-      
       <li><a href="#value">Value</a></li>
-
       <li><a href="#note">Note</a></li>
-
       <li><a href="#see-also">See also</a></li>
-      
       <li><a href="#examples">Examples</a></li>
     </ul>
 
     <h2>Author</h2>
-    
-  Johannes Ranke <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
+    <p>Johannes Ranke <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
   The functionality of the drc package used under the hood in this function
-  was written by Christian Ritz.
-
+  was written by Christian Ritz.</p>
   </div>
 </div>
 
+
       <footer>
       <div class="copyright">
   <p>Developed by Johannes Ranke.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
 </div>
 
       </footer>
@@ -286,6 +284,8 @@
 
   
 
+
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+
author	Johannes Ranke <jranke@uni-bremen.de>	2020-02-07 07:50:11 +0100
committer	Johannes Ranke <jranke@uni-bremen.de>	2020-02-07 07:50:11 +0100
commit	fbdd2459014999b89f65678b3e0c348f91e27167 (patch)
tree	b15408520a5ff1744a2ba8c008d8e0d793fd3c09 /docs/reference/drcfit.html
parent	d894b16fd245c33d458e3036b711be78e70053bd (diff)