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authorJohannes Ranke <jranke@uni-bremen.de>2020-02-07 07:50:11 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2020-02-07 07:50:11 +0100
commitfbdd2459014999b89f65678b3e0c348f91e27167 (patch)
treeb15408520a5ff1744a2ba8c008d8e0d793fd3c09 /docs/reference/drcfit.html
parentd894b16fd245c33d458e3036b711be78e70053bd (diff)
Update static documentation
Diffstat (limited to 'docs/reference/drcfit.html')
-rw-r--r--docs/reference/drcfit.html72
1 files changed, 36 insertions, 36 deletions
diff --git a/docs/reference/drcfit.html b/docs/reference/drcfit.html
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+++ b/docs/reference/drcfit.html
@@ -1,6 +1,6 @@
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@@ -8,21 +8,25 @@
<title>Fit dose-response models using the drc package — drcfit • drfit</title>
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@@ -30,16 +34,18 @@
-<meta property="og:title" content="Fit dose-response models using the drc package — drcfit" />
+<meta property="og:title" content="Fit dose-response models using the drc package — drcfit" />
<meta property="og:description" content="Fit dose-response relationships to dose-response data and calculate
biometric results for (eco)toxicity evaluation using the drc package" />
<meta name="twitter:card" content="summary" />
+
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@@ -55,14 +62,15 @@
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- <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.2</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.7.3</span>
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@@ -70,7 +78,7 @@
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- <span class="fa fa-home fa-lg"></span>
+ <span class="fas fa fas fa-home fa-lg"></span>
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@@ -78,7 +86,6 @@
<a href="../reference/index.html">Reference</a>
</li>
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-
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</ul>
@@ -88,6 +95,7 @@
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+
</header>
<div class="row">
@@ -99,16 +107,14 @@
</div>
<div class="ref-description">
-
<p>Fit dose-response relationships to dose-response data and calculate
biometric results for (eco)toxicity evaluation using the drc package</p>
-
</div>
<pre class="usage"><span class='fu'>drcfit</span>(<span class='no'>data</span>, <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>probit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
<span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>level</span> <span class='kw'>=</span> <span class='fl'>0.95</span>,
<span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='kw'>NULL</span>)</pre>
-
+
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
<colgroup><col class="name" /><col class="desc" /></colgroup>
@@ -136,7 +142,7 @@
<tr>
<th>logit</th>
<td><p>A boolean defining if cumulative density curves of logistic distributions
- <code>plogis</code> are fitted to the decadic logarithm of the dose.
+ <code><a href='https://rdrr.io/r/stats/Logistic.html'>plogis</a></code> are fitted to the decadic logarithm of the dose.
Default is FALSE.
Again the parameter definitions used in the model are different to the
ones used in <code><a href='drfit.html'>drfit</a></code>. Parameter e from <code>LL.2</code> is listed
@@ -179,11 +185,11 @@
scale (not log scale) is included in the output.</p></td>
</tr>
</table>
-
+
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>A dataframe with the attribute <code>models</code> holding a list of the fitted
- dose-response models of class <code>nls</code>. The dataframe has at least
+ dose-response models of class <code><a href='https://rdrr.io/r/stats/nls.html'>nls</a></code>. The dataframe has at least
one line for each substance.</p>
<p>The following variables are in the dataframe:</p>
<dt>Substance</dt><dd><p>The name of the substance</p></dd>
@@ -222,24 +228,21 @@
the corresponding dose levels are given in addition, together with their
confidence intervals as calculated by ED from the drc package.
-
<h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2>
<p>There is a demo for each dataset that can be accessed by
- <code>demo(dataset)</code></p>
-
+ <code><a href='https://rdrr.io/r/utils/demo.html'>demo(dataset)</a></code></p>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
<div class='dont-index'><p>Further examples are given in help pages to the datasets
<code><a href='antifoul.html'>antifoul</a></code>, <code><a href='IM1xIPC81.html'>IM1xIPC81</a></code> and
<code><a href='IM1xVibrio.html'>IM1xVibrio</a></code>.</p></div>
-
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='fu'>data</span>(<span class='no'>antifoul</span>)
-<span class='no'>r</span> <span class='kw'>&lt;-</span> <span class='fu'>drcfit</span>(<span class='no'>antifoul</span>, <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>5</span>, <span class='fl'>10</span>, <span class='fl'>20</span>))</div><div class='output co'>#&gt; <span class='message'></span>
+ <pre class="examples"><div class='input'><span class='fu'><a href='https://rdrr.io/r/utils/data.html'>data</a></span>(<span class='no'>antifoul</span>)
+<span class='no'>r</span> <span class='kw'>&lt;-</span> <span class='fu'>drcfit</span>(<span class='no'>antifoul</span>, <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>5</span>, <span class='fl'>10</span>, <span class='fl'>20</span>))</div><div class='output co'>#&gt; <span class='message'></span>
#&gt; <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
-#&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='input'><span class='fu'>format</span>(<span class='no'>r</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>2</span>)</div><div class='output co'>#&gt; Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma a
+#&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/format.html'>format</a></span>(<span class='no'>r</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>2</span>)</div><div class='output co'>#&gt; Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma a
#&gt; 1 TBT 38 135 -2.7 2.4 probit -0.16 -0.28 -0.072 microM 0.19 0.68
#&gt; 2 Zn Pyrithion 27 81 -2.1 2.0 probit -0.40 -0.52 -0.303 microM 0.23 0.40
#&gt; b ED50 ED50 2.5% ED50 97.5% EDx5 EDx5 2.5% EDx5 97.5% EDx10 EDx10 2.5%
@@ -253,32 +256,27 @@
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#arguments">Arguments</a></li>
-
<li><a href="#value">Value</a></li>
-
<li><a href="#note">Note</a></li>
-
<li><a href="#see-also">See also</a></li>
-
<li><a href="#examples">Examples</a></li>
</ul>
<h2>Author</h2>
-
- Johannes Ranke <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
+ <p>Johannes Ranke <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
The functionality of the drc package used under the hood in this function
- was written by Christian Ritz.
-
+ was written by Christian Ritz.</p>
</div>
</div>
+
<footer>
<div class="copyright">
<p>Developed by Johannes Ranke.</p>
</div>
<div class="pkgdown">
- <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
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@@ -286,6 +284,8 @@
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