Update static documentation

author: Johannes Ranke <jranke@uni-bremen.de> 2020-02-07 07:50:11 +0100
committer: Johannes Ranke <jranke@uni-bremen.de> 2020-02-07 07:50:11 +0100
commit: fbdd2459014999b89f65678b3e0c348f91e27167 (patch)
tree: b15408520a5ff1744a2ba8c008d8e0d793fd3c09 /docs/reference/drdata.html
parent: d894b16fd245c33d458e3036b711be78e70053bd (diff)
1 files changed, 36 insertions, 34 deletions
diff --git a/docs/reference/drdata.html b/docs/reference/drdata.html
index 438f32c..104e190 100644
--- a/docs/reference/drdata.html
+++ b/docs/reference/drdata.html
@@ -1,6 +1,6 @@
 <!-- Generated by pkgdown: do not edit by hand -->
 <!DOCTYPE html>
-<html>
+<html lang="en">
   <head>
   <meta charset="utf-8">
 <meta http-equiv="X-UA-Compatible" content="IE=edge">
@@ -8,21 +8,25 @@
 
 <title>Get dose-response data via RODBC — drdata • drfit</title>
 
+
 <!-- jquery -->
-<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
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-<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
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+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha256-916EbMg70RQy9LHiGkXzG8hSg9EdNy97GazNG/aiY1w=" crossorigin="anonymous" />
+
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+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/all.min.css" integrity="sha256-nAmazAk6vS34Xqo0BSrTb+abbtFlgsFK7NKSi6o7Y78=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/v4-shims.min.css" integrity="sha256-6qHlizsOWFskGlwVOKuns+D1nB6ssZrHQrNj1wGplHc=" crossorigin="anonymous" />
 
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+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script>
 
-<!-- sticky kit -->
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+<!-- headroom.js -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/headroom.min.js" integrity="sha256-DJFC1kqIhelURkuza0AvYal5RxMtpzLjFhsnVIeuk+U=" crossorigin="anonymous"></script>
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 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
@@ -30,15 +34,17 @@
 
 
 
-<meta property="og:title" content="Get dose-response data via RODBC — drdata" />
 
+<meta property="og:title" content="Get dose-response data via RODBC — drdata" />
 <meta property="og:description" content="Get dose-response data from an adequate ODBC data source" />
 <meta name="twitter:card" content="summary" />
 
 
 
+
 <!-- mathjax -->
-<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
 
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 <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
@@ -46,6 +52,7 @@
 <![endif]-->
 
 
+
   </head>
 
   <body>
@@ -54,14 +61,15 @@
       <div class="navbar navbar-default navbar-fixed-top" role="navigation">
   <div class="container">
     <div class="navbar-header">
-      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
+      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
+        <span class="sr-only">Toggle navigation</span>
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">drfit</a>
-        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.2</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.7.3</span>
       </span>
     </div>
 
@@ -69,7 +77,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fa fa-home fa-lg"></span>
+    <span class="fas fa fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -77,7 +85,6 @@
   <a href="../reference/index.html">Reference</a>
 </li>
       </ul>
-      
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
@@ -87,6 +94,7 @@
 </div><!--/.navbar -->
 
       
+
       </header>
 
 <div class="row">
@@ -98,16 +106,14 @@
     </div>
 
     <div class="ref-description">
-    
     <p>Get dose-response data from an adequate ODBC data source</p>
-    
     </div>
 
     <pre class="usage"><span class='fu'>drdata</span>(<span class='no'>substances</span>, <span class='kw'>experimentator</span> <span class='kw'>=</span> <span class='st'>"%"</span>, <span class='kw'>db</span> <span class='kw'>=</span> <span class='st'>"cytotox"</span>,
     <span class='kw'>celltype</span> <span class='kw'>=</span> <span class='st'>"IPC-81"</span>, <span class='kw'>enzymetype</span> <span class='kw'>=</span> <span class='st'>"AChE"</span>, <span class='kw'>organism</span> <span class='kw'>=</span> <span class='st'>"Vibrio fischeri"</span>,
     <span class='kw'>endpoint</span> <span class='kw'>=</span> <span class='st'>"Luminescence"</span>,
     <span class='kw'>whereClause</span> <span class='kw'>=</span> <span class='st'>"1"</span>, <span class='kw'>ok</span> <span class='kw'>=</span> <span class='st'>"'ok','no fit'"</span>)</pre>
-    
+
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
@@ -161,7 +167,7 @@
     additionally retrieve data which has not yet been checked.</p></td>
     </tr>
     </table>
-    
+
     <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
 
     <p></p>
@@ -170,7 +176,6 @@
     for plate, experimentator, performed (date of test performance), celltype,
     unit (of the dose/concentration), and for the ok field in the database.</p></dd>
 
-    
     <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>
 
     <p>The function is currently only used for retrieving data from the
@@ -186,7 +191,6 @@
 <tr><td>Description</td><td>=</td><td>MySQL driver for ODBC</td></tr>
 <tr><td>Driver</td><td>=</td><td>/usr/local/lib/libmyodbc.so</td></tr>
 <tr><td>Setup</td><td>=</td><td>/usr/lib/odbc/libodbcmyS.so</td></tr>
-<tr><td></td><td>[MySQL]</td><td></td></tr>
 </table>
 <p>and the file <code class="file">/etc/odbc.ini</code> containing:</p><table class='table'>
 <tr><td>[cytotox]</td><td></td><td></td></tr>
@@ -197,46 +201,42 @@
 <tr><td>Database</td><td>=</td><td>cytotox</td></tr>
 <tr><td>Server</td><td>=</td><td>eckehaat</td></tr>
 <tr><td>Port</td><td>=</td><td>3306</td></tr>
-<tr><td></td><td>[cytotox]</td><td></td></tr>
 </table>
-    
+
+
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'>  </div><span class='co'># NOT RUN {</span>
+    <pre class="examples"><div class='input'>  <span class='kw'>if</span> (<span class='fl'>FALSE</span>) {
+
   <span class='co'># Get cytotoxicity data for Tributyltin and zinc pyrithione, tested with IPC-81</span>
   <span class='co'># cells</span>
-  <span class='fu'>drdata</span>(<span class='fu'>c</span>(<span class='st'>"TBT"</span>, <span class='st'>"ZnPT2"</span>))
-
+  <span class='fu'>drdata</span>(<span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"TBT"</span>, <span class='st'>"ZnPT2"</span>))
 
-<span class='co'># }</span></pre>
+  }</div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
     <ul class="nav nav-pills nav-stacked">
       <li><a href="#arguments">Arguments</a></li>
-      
       <li><a href="#value">Value</a></li>
-
       <li><a href="#details">Details</a></li>
-      
       <li><a href="#examples">Examples</a></li>
     </ul>
 
     <h2>Author</h2>
-    
-  Johannes Ranke
-  <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a>
-
+    <p>Johannes Ranke
+  <a href='mailto:jranke@uni-bremen.de'>jranke@uni-bremen.de</a></p>
   </div>
 </div>
 
+
       <footer>
       <div class="copyright">
   <p>Developed by Johannes Ranke.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
 </div>
 
       </footer>
@@ -244,6 +244,8 @@
 
   
 
+
   </body>
 </html>
 
+
author	Johannes Ranke <jranke@uni-bremen.de>	2020-02-07 07:50:11 +0100
committer	Johannes Ranke <jranke@uni-bremen.de>	2020-02-07 07:50:11 +0100
commit	fbdd2459014999b89f65678b3e0c348f91e27167 (patch)
tree	b15408520a5ff1744a2ba8c008d8e0d793fd3c09 /docs/reference/drdata.html
parent	d894b16fd245c33d458e3036b711be78e70053bd (diff)