diff options
| -rw-r--r-- | DESCRIPTION | 2 | ||||
| -rw-r--r-- | data/pyrithione.rda | bin | 54479 -> 12931 bytes | |||
| -rw-r--r-- | tests/IM1xIPC81.Rout.save | 16 | ||||
| -rw-r--r-- | tests/XY.Rout.save | 4 | ||||
| -rw-r--r-- | tests/antifoul.Rout.save | 6 | ||||
| -rw-r--r-- | tests/pyrithione.Rout.save | 78 |
6 files changed, 48 insertions, 58 deletions
diff --git a/DESCRIPTION b/DESCRIPTION index 997f7c1..a31c084 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: drfit -Version: 0.05-87 +Version: 0.05-88 Date: 2007-03-29 Title: Dose-response data evaluation Author: Johannes Ranke <jranke@uni-bremen.de> diff --git a/data/pyrithione.rda b/data/pyrithione.rda Binary files differindex 0256679..2ce3baf 100644 --- a/data/pyrithione.rda +++ b/data/pyrithione.rda diff --git a/tests/IM1xIPC81.Rout.save b/tests/IM1xIPC81.Rout.save index 41d4e48..c927d25 100644 --- a/tests/IM1xIPC81.Rout.save +++ b/tests/IM1xIPC81.Rout.save @@ -1,6 +1,6 @@ -R : Copyright 2006, The R Foundation for Statistical Computing -Version 2.3.1 beta (2006-05-18 r38119) +R version 2.4.1 (2006-12-18) +Copyright (C) 2006 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -25,8 +25,8 @@ IM13 BF4: Fitting data... IM14 BF4: Fitting data... Error in nls(response ~ linlogitf(dose, 1, f, logED50, b), data = tmp, : - singular gradient -Error in numericDeriv(form[[3]], names(ind), env) : + Convergence failure: false convergence (8) +Error in numericDeriv(form[[3]], names(ind), env, ifelse(internalPars < : Missing value or an infinity produced when evaluating the model In addition: Warning message: NaNs produced in: pnorm(q, mean, sd, lower.tail, log.p) @@ -37,21 +37,21 @@ IM16 BF4: Fitting data... IM17 BF4: Fitting data... Waiting for profiling to be done... -Error in numericDeriv(form[[3]], names(ind), env) : +Error in numericDeriv(form[[3]], names(ind), env, ifelse(internalPars < : Missing value or an infinity produced when evaluating the model In addition: Warning message: NaNs produced in: pnorm(q, mean, sd, lower.tail, log.p) IM18 BF4: Fitting data... Waiting for profiling to be done... -Error in numericDeriv(form[[3]], names(ind), env) : +Error in numericDeriv(form[[3]], names(ind), env, ifelse(internalPars < : Missing value or an infinity produced when evaluating the model In addition: Warning message: NaNs produced in: pnorm(q, mean, sd, lower.tail, log.p) IM19 BF4: Fitting data... Waiting for profiling to be done... -Error in numericDeriv(form[[3]], names(ind), env) : +Error in numericDeriv(form[[3]], names(ind), env, ifelse(internalPars < : Missing value or an infinity produced when evaluating the model In addition: Warning message: NaNs produced in: pnorm(q, mean, sd, lower.tail, log.p) @@ -76,5 +76,5 @@ Waiting for profiling to be done... 5 0.23759 2.5786 2.3002 0.014680 6 0.23249 1.6806 2.2373 0.057193 7 0.14527 1.6496 1.9770 0.109561 -8 0.29877 0.7697 1.9363 0.458086 +8 0.29877 0.7697 1.9363 0.458090 > diff --git a/tests/XY.Rout.save b/tests/XY.Rout.save index 749e699..9172e08 100644 --- a/tests/XY.Rout.save +++ b/tests/XY.Rout.save @@ -1,6 +1,6 @@ -R : Copyright 2006, The R Foundation for Statistical Computing -Version 2.3.1 beta (2006-05-18 r38119) +R version 2.4.1 (2006-12-18) +Copyright (C) 2006 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. diff --git a/tests/antifoul.Rout.save b/tests/antifoul.Rout.save index 8f1d276..9cd818f 100644 --- a/tests/antifoul.Rout.save +++ b/tests/antifoul.Rout.save @@ -1,6 +1,6 @@ -R : Copyright 2006, The R Foundation for Statistical Computing -Version 2.3.1 beta (2006-05-18 r38119) +R version 2.4.1 (2006-12-18) +Copyright (C) 2006 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -31,6 +31,6 @@ Waiting for profiling to be done... 1 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.26504 -0.056486 然 2 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.50783 -0.291561 然 sigma a b -1 0.19286 -0.16436 0.67639 +1 0.19286 -0.16436 0.67637 2 0.22866 -0.39792 0.41696 > diff --git a/tests/pyrithione.Rout.save b/tests/pyrithione.Rout.save index b07d555..b5712db 100644 --- a/tests/pyrithione.Rout.save +++ b/tests/pyrithione.Rout.save @@ -1,6 +1,6 @@ -R : Copyright 2006, The R Foundation for Statistical Computing -Version 2.3.1 beta (2006-05-18 r38119) +R version 2.4.1 (2006-12-18) +Copyright (C) 2006 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -23,11 +23,13 @@ Loading required package: RODBC Na Pyrithion: Fitting data... Waiting for profiling to be done... -Error in prof$getProfile() : number of iterations exceeded maximum of 50 +Error in prof$getProfile() : attempt to apply non-function Pyridin: Fitting data... PyNO: Fitting data... +Error in nls(response ~ linlogitf(dose, 1, f, logED50, b), data = tmp, : + Convergence failure: false convergence (8) (PT)2: Fitting data... Waiting for profiling to be done... @@ -38,13 +40,8 @@ MSPHI: Fitting data... Waiting for profiling to be done... PyS: Fitting data... -Error in nls(response ~ linlogitf(dose, 1, f, logED50, b), data = tmp, : - step factor 0.000488281 reduced below 'minFactor' of 0.000976562 Waiting for profiling to be done... -Error in numericDeriv(form[[3]], names(ind), env) : - Missing value or an infinity produced when evaluating the model -In addition: Warning message: -NaNs produced in: pnorm(q, mean, sd, lower.tail, log.p) +Error in prof$getProfile() : attempt to apply non-function Zn Pyrithion: Fitting data... Waiting for profiling to be done... @@ -55,11 +52,6 @@ Waiting for profiling to be done... Fe Pyrithion: Fitting data... Waiting for profiling to be done... -(PyS)2: Fitting data... -Error in nls(response ~ linlogitf(dose, 1, f, logED50, b), data = tmp, : - singular gradient -Waiting for profiling to be done... - MSPT: Fitting data... Waiting for profiling to be done... @@ -68,34 +60,32 @@ Waiting for profiling to be done... NaJ: Fitting data... > print(rpyr,digits=3) - Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma -1 Na Pyrithion 20 108 -2.107 2.0 linlogit -0.346 NA NA 然 0.2086 -2 Pyridin 19 161 0.592 3.7 inactive NA NA NA 然 NA -3 PyNO 19 81 0.592 3.7 no fit NA NA NA 然 0.0919 -4 (PT)2 19 81 -2.408 2.0 linlogit -0.420 -0.533 NA 然 0.2051 -5 MSO2P 28 108 -1.709 3.7 inactive NA NA NA 然 NA -6 MSPHI 19 81 0.592 3.7 probit 3.663 3.555 3.8805 然 0.1294 -7 PyS 18 80 -0.408 3.0 probit 2.682 NA NA 然 0.1340 -8 Zn Pyrithion 27 81 -2.107 2.0 linlogit -0.413 -0.529 -0.2998 然 0.2288 -9 Cu Pyrithion 19 79 -2.408 2.0 linlogit -0.307 -0.475 -0.1544 然 0.2449 -10 Fe Pyrithion 19 81 -2.408 2.0 linlogit -0.353 -0.500 -0.2146 然 0.2338 -11 (PyS)2 20 81 -0.408 3.0 probit 1.784 1.673 1.8882 然 0.2330 -12 MSPT 18 108 -0.408 3.0 probit 2.138 2.071 2.2051 然 0.2288 -13 TBT 38 135 -2.709 2.4 linlogit -0.158 -0.260 -0.0505 然 0.1926 -14 NaJ 10 108 0.592 3.3 inactive NA NA NA 然 NA - a b c -1 -0.346 2.119 -0.2670 -2 NA NA NA -3 NA NA NA -4 -0.420 1.847 -0.5151 -5 NA NA NA -6 3.663 0.439 NA -7 2.682 0.125 NA -8 -0.413 1.742 0.6108 -9 -0.307 1.015 -0.0490 -10 -0.353 1.182 0.0251 -11 1.784 0.410 NA -12 2.138 0.211 NA -13 -0.158 1.041 -0.0242 -14 NA NA NA + Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma +1 Na Pyrithion 20 108 -2.107 2.0 linlogit -0.346 NA NA 然 0.209 +2 Pyridin 19 161 0.592 3.7 inactive NA NA NA 然 NA +3 PyNO 19 81 0.592 3.7 no fit NA NA NA 然 0.107 +4 (PT)2 19 81 -2.408 2.0 linlogit -0.420 -0.533 NA 然 0.205 +5 MSO2P 28 108 -1.709 3.7 inactive NA NA NA 然 NA +6 MSPHI 19 81 0.592 3.7 probit 3.663 3.555 3.8805 然 0.129 +7 PyS 18 80 -0.408 3.0 linlogit 2.756 NA NA 然 0.146 +8 Zn Pyrithion 27 81 -2.107 2.0 linlogit -0.413 -0.529 -0.2998 然 0.229 +9 Cu Pyrithion 19 79 -2.408 2.0 linlogit -0.307 -0.475 -0.1544 然 0.245 +10 Fe Pyrithion 19 81 -2.408 2.0 linlogit -0.353 -0.500 -0.2146 然 0.234 +11 MSPT 18 108 -0.408 3.0 probit 2.138 2.071 2.2051 然 0.229 +12 TBT 38 135 -2.709 2.4 linlogit -0.158 -0.260 -0.0505 然 0.193 +13 NaJ 10 108 0.592 3.3 inactive NA NA NA 然 NA + a b c +1 -0.346 2.119 -0.266998 +2 NA NA NA +3 NA NA NA +4 -0.420 1.847 -0.515071 +5 NA NA NA +6 3.663 0.439 NA +7 2.756 0.743 -0.000993 +8 -0.413 1.742 0.610900 +9 -0.307 1.015 -0.048966 +10 -0.353 1.182 0.025082 +11 2.138 0.211 NA +12 -0.158 1.041 -0.024165 +13 NA NA NA > |