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-rw-r--r--R/drfit.R17
1 files changed, 9 insertions, 8 deletions
diff --git a/R/drfit.R b/R/drfit.R
index e3d9d3b..e993c61 100644
--- a/R/drfit.R
+++ b/R/drfit.R
@@ -2,7 +2,8 @@ drfit <- function(data, startlogED50 = NA, chooseone=TRUE,
probit = TRUE, logit = FALSE, weibull = FALSE,
linlogit = FALSE, level = 0.95,
linlogitWrong = NA, allWrong = NA,
- s0 = 0.5, b0 = 2, f0 = 0)
+ ps0 = 1, ls0 = 0.5, ws0 = 0.5,
+ b0 = 2, f0 = 0)
{
require(MASS)
if(!is.null(data$ok)) data <- subset(data,ok!="no fit") # Don't use data
@@ -114,7 +115,7 @@ drfit <- function(data, startlogED50 = NA, chooseone=TRUE,
length(subset(allWrong,allWrong == i))==0) {
m <- try(nls(response ~ pnorm(-log10(dose),-logED50,scale),
data=tmp,
- start=list(logED50=startlogED50[[i]],scale=1)))
+ start=list(logED50=startlogED50[[i]],scale=ps0)))
if (chooseone==FALSE || fit==FALSE) {
if (!inherits(m, "try-error")) {
fit <- TRUE
@@ -157,7 +158,7 @@ drfit <- function(data, startlogED50 = NA, chooseone=TRUE,
length(subset(allWrong,allWrong == i))==0) {
m <- try(nls(response ~ plogis(-log10(dose),-logED50,scale),
data=tmp,
- start=list(logED50=startlogED50[[i]],scale=1)))
+ start=list(logED50=startlogED50[[i]],scale=ls0)))
if (chooseone==FALSE || fit==FALSE) {
if (!inherits(m, "try-error")) {
fit <- TRUE
@@ -199,7 +200,7 @@ drfit <- function(data, startlogED50 = NA, chooseone=TRUE,
length(subset(allWrong,allWrong == i))==0) {
m <- try(nls(response ~ pweibull(-log10(dose)+location,shape),
data=tmp,
- start=list(location=startlogED50[[i]],shape=s0)))
+ start=list(location=startlogED50[[i]],shape=ws0)))
if (chooseone==FALSE || fit==FALSE) {
if (!inherits(m, "try-error")) {
fit <- TRUE
@@ -273,10 +274,10 @@ drfit <- function(data, startlogED50 = NA, chooseone=TRUE,
}
results <- data.frame(rsubstance, rndl, rn, rlld, rlhd, mtype,
logED50, logED50low, logED50high, runit, sigma, a, b)
- names(results) <- c("Substance","ndl","n","lld","lhd","mtype","logED50",
- paste(100*(1-level)/2,"%",sep=""),
- paste(100*(1+level)/2,"%",sep=""),
- "unit","sigma","a","b")
+ names(results) <- c("Substance","ndl","n","lld","lhd","mtype","logED50",
+ paste(100*(1-level)/2,"%",sep=""),
+ paste(100*(1+level)/2,"%",sep=""),
+ "unit","sigma","a","b")
if (linlogit) {
results$c <- c

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