diff options
Diffstat (limited to 'R')
| -rw-r--r-- | R/drfit.R | 9 |
1 files changed, 4 insertions, 5 deletions
@@ -39,7 +39,7 @@ linlogitf <- function(x,k,f,mu,b) drfit <- function(data, startlogEC50 = NA, chooseone=TRUE, probit = TRUE, logit = FALSE, weibull = FALSE, linlogit = FALSE, linlogitWrong = NA, allWrong = NA, - b0 = 2, f0 = 0) + s0 = 0.5, b0 = 2, f0 = 0) { if(!is.null(data$ok)) data <- subset(data,ok!="no fit") # Don't use data where ok # was set to "no fit" @@ -130,7 +130,7 @@ drfit <- function(data, startlogEC50 = NA, chooseone=TRUE, length(subset(allWrong,allWrong == i))==0) { m <- try(nls(response ~ pweibull(-log10(dose)+location,shape), data=tmp, - start=list(location=-0.16,shape=0.4659))) + start=list(location=startlogEC50[[i]],shape=s0))) if (chooseone==FALSE || fit==FALSE) { if (!inherits(m, "try-error")) { fit <- TRUE @@ -179,7 +179,8 @@ drfit <- function(data, startlogEC50 = NA, chooseone=TRUE, rlld[[ri]] <- log10(lowestdose) rlhd[[ri]] <- log10(highestdose) mtype[[ri]] <- "logit" - logEC50[[ri]] <- coef(m)[["logEC50"]] + logEC50[[ri]] <- a[[ri]] <- coef(m)[["logEC50"]] + b[[ri]] <- coef(m)[["scale"]] c[[ri]] <- NA if (logEC50[[ri]] > rlhd[[ri]]) { logEC50[[ri]] <- NA @@ -188,8 +189,6 @@ drfit <- function(data, startlogEC50 = NA, chooseone=TRUE, b[[ri]] <- NA } else { stderrlogEC50[[ri]] <- s$parameters["logEC50","Std. Error"] - a[[ri]] <- coef(m)[["logEC50"]] - b[[ri]] <- coef(m)[["scale"]] } } } |