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-rw-r--r--man/checkexperiment.Rd13
-rw-r--r--man/checksubstance.Rd13
-rw-r--r--man/drplot.Rd13
3 files changed, 30 insertions, 9 deletions
diff --git a/man/checkexperiment.Rd b/man/checkexperiment.Rd
index 56db90c..1162d1b 100644
--- a/man/checkexperiment.Rd
+++ b/man/checkexperiment.Rd
@@ -7,16 +7,19 @@
specified database, box plot controls, and plot the dose-response data.
}
\usage{
- checkplate(id,db="cytotox")
- checkexperiment(id,db="ecotox")
+ checkplate(id, db = "cytotox")
+ checkexperiment(id, db = "ecotox", endpoint = "\%")
}
\arguments{
\item{id}{
The id of the experiment or the plate identifying it within the database.}
\item{db}{
- The database to be used. Currently, the microtiter plate databases
- "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are
- supported, as well as the database of ecotoxicity experiments "ecotox".}
+ The database to be used. Currently, the microtiter plate databases
+ "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are
+ supported, as well as the database of ecotoxicity experiments "ecotox".}
+ \item{endpoint}{
+ The endpoint that should be used for selecting the data. Only important if
+ the database "ecotox" is used. Defaults to "\%".}
}
\value{
The function lists a report and shows two graphs side by side.
diff --git a/man/checksubstance.Rd b/man/checksubstance.Rd
index f5340fe..387785f 100644
--- a/man/checksubstance.Rd
+++ b/man/checksubstance.Rd
@@ -6,7 +6,10 @@
the data.
}
\usage{
- checksubstance(substance,db="cytotox",experimentator="\%",celltype="\%",enzymetype="\%",whereClause="1",ok="\%")
+ checksubstance(substance, db = "cytotox", experimentator = "\%",
+ celltype = "\%", enzymetype = "\%", organism = "\%",
+ endpoint = "\%",
+ whereClause = "1", ok = "\%")
}
\arguments{
\item{substance}{
@@ -25,9 +28,15 @@
\item{enzymetype}{
Currently, only data for AChE, GR and GST are supported. The default value
is "\%", i.e. data for any enzyme type will be displayed.}
+ \item{organism}{
+ The latin name of the tested organism, if the ecotox db was selected. The
+ default value is "\%", i.e. data for any organism will be displayed.}
+ \item{endpoint}{
+ The endpoint that should be used for selecting the data. Only important if
+ the database "ecotox" is used. Defaults to "\%".}
\item{whereClause}{
With this argument, additional conditions for the SQL query can be set,
- e.g. "where plate != 710". The default is 1 (in SQL syntax this means TRUE).}
+ e.g. "plate != 710". The default is 1 (in SQL syntax this means TRUE).}
\item{ok}{
With the default value "\%", all data in the database is retrieved for the
specified substance.}
diff --git a/man/drplot.Rd b/man/drplot.Rd
index bff2388..7924be2 100644
--- a/man/drplot.Rd
+++ b/man/drplot.Rd
@@ -7,8 +7,8 @@
}
\usage{
drplot(drresults, data, dtype, alpha, ctype, path,
- fileprefix, overlay, xlim, ylim, postscript, pdf, png, bw,
- pointsize, colors, devoff, lpos)
+ fileprefix, overlay, xlim, ylim, xlab, ylab, postscript, pdf, png, bw,
+ pointsize, colors, ltys, devoff, lpos)
}
\arguments{
\item{drresults}{
@@ -57,6 +57,12 @@
\item{ylim}{
The plot limits (min,max) on the response axis.
}
+ \item{xlab}{
+ The axis title for the x axis. Defaults to "Concentration in" \code{unit}.
+ }
+ \item{ylab}{
+ The axis title for the y axis. Defaults to "Normalized response".
+ }
\item{postscript}{
If TRUE, (a) postscript graph(s) will be created. Otherwise, and if
the pdf and png arguments are also FALSE, graphics will be
@@ -82,6 +88,9 @@
\item{colors}{
This is a vector of colors, defaulting to 1:8, used for plotting the data.
}
+ \item{ltys}{
+ This is a vector of line types for the dose-response models, defaulting to 1:8.
+ }
\item{lpos}{
An optional argument defaulting to "topright" specifying the position
of the legend by being passed to the legend function. See the help for the

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