1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
|
<!-- Generated by pkgdown: do not edit by hand -->
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells — antifoul • drfit</title>
<!-- jquery -->
<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script>
<!-- Bootstrap -->
<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
<!-- Font Awesome icons -->
<link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
<!-- pkgdown -->
<link href="../pkgdown.css" rel="stylesheet">
<script src="../jquery.sticky-kit.min.js"></script>
<script src="../pkgdown.js"></script>
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
</head>
<body>
<div class="container template-reference-topic">
<header>
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="../index.html">drfit</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="../reference/index.html">Reference</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
</header>
<div class="row">
<div class="col-md-9 contents">
<div class="page-header">
<h1>Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells</h1>
</div>
<p>This data set shows the response of the rat leukaemic cell line IPC-81 to
dilution series of tributyltin chloride (TBT) and Zink Pyrithione as retrieved
from the "cytotox" database of the UFT Department of Bioorganic Chemistry on
February 25, 2004</p>
<pre class="usage"><span class='fu'>data</span>(<span class='no'>antifoul</span>)</pre>
<h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
<p>A dataframe containing 135 and 81 data points for concentrations and responses
for TBT and Zink Pyrithione, respectively. Some additional columns from the
database are also present.</p>
<h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
<p><a href = 'http://www.uft.uni-bremen.de/chemie'>http://www.uft.uni-bremen.de/chemie</a></p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'><span class='no'>rantifoul.ED50</span> <span class='kw'><-</span> <span class='fu'><a href='drfit.html'>drfit</a></span>(<span class='no'>antifoul</span>,
<span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
<span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
<span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>10</span>))</div><div class='output co'>#> <span class='message'></span>
#> <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'></span>
#> <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='input'><span class='fu'>print</span>(<span class='no'>rantifoul.ED50</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>5</span>)</div><div class='output co'>#> Substance ndl n lld lhd mtype logED50 2.5% 97.5%
#> 1 TBT 38 135 -2.7093 2.3979 linlogit -0.15809 -0.26021 -0.050475
#> 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.26504 -0.056498
#> 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.26116 -0.052591
#> 4 TBT 38 135 -2.7093 2.3979 weibull -0.11507 NA NA
#> 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41329 -0.52932 -0.299799
#> 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.50783 -0.291563
#> 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.51049 -0.293501
#> 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.38795 NA NA
#> unit sigma a b c ED50 ED50 2.5% ED50 97.5%
#> 1 microM 0.19264 -0.15809 1.04065 -0.024165 0.69487 0.54927 0.89028
#> 2 microM 0.19286 -0.16436 0.67637 NA 0.68493 0.54320 0.87801
#> 3 microM 0.19199 -0.16012 0.41358 NA 0.69164 0.54808 0.88595
#> 4 microM 0.18810 0.63743 1.28891 NA 0.76724 NA NA
#> 5 microM 0.22878 -0.41329 1.74249 0.610810 0.38611 0.29558 0.50142
#> 6 microM 0.22866 -0.39792 0.41696 NA 0.40002 0.31058 0.51102
#> 7 microM 0.22802 -0.40035 0.25395 NA 0.39779 0.30868 0.50874
#> 8 microM 0.23008 0.47647 2.51561 NA 0.40931 NA NA
#> EDx10
#> 1 0.085214
#> 2 0.093077
#> 3 0.085340
#> 4 0.053392
#> 5 0.120232
#> 6 0.116872
#> 7 0.110068
#> 8 0.121166</div><div class='input'>
<span class='no'>rantifoul.drc</span> <span class='kw'><-</span> <span class='fu'><a href='drcfit.html'>drcfit</a></span>(<span class='no'>antifoul</span>,
<span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
<span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
<span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>10</span>))</div><div class='output co'>#> <span class='message'></span>
#> <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#> <span class='message'></span>
#> <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='input'><span class='fu'>print</span>(<span class='no'>rantifoul.drc</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>5</span>)</div><div class='output co'>#> Substance ndl n lld lhd mtype logED50 2.5% 97.5%
#> 1 TBT 38 135 -2.7093 2.3979 linlogit NA NA NA
#> 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.28178 -0.072022
#> 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.27782 -0.067603
#> 4 TBT 38 135 -2.7093 2.3979 weibull -0.13012 -0.23786 -0.043860
#> 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41330 -0.54457 -0.312631
#> 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.52005 -0.302705
#> 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.52324 -0.304676
#> 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.37351 -0.49792 -0.276917
#> unit sigma a b c ED50 ED50 2.5% ED50 97.5%
#> 1 microM 0.19264 0.71806 1.04061 -0.024169 NA NA NA
#> 2 microM 0.19286 0.68492 -0.64209 NA 0.68492 0.52267 0.84718
#> 3 microM 0.19199 0.69165 1.05007 NA 0.69165 0.52744 0.85585
#> 4 microM 0.18900 -0.13012 0.79816 NA 0.74111 0.57828 0.90394
#> 5 microM 0.22878 0.30926 1.74257 0.611358 0.38610 0.28538 0.48682
#> 6 microM 0.22866 0.40002 -1.04159 NA 0.40002 0.30196 0.49808
#> 7 microM 0.22802 0.39779 1.71015 NA 0.39779 0.29975 0.49582
#> 8 microM 0.23077 -0.37351 1.19152 NA 0.42315 0.31775 0.52855
#> EDx10 EDx10 2.5% EDx10 97.5%
#> 1 NA NA NA
#> 2 0.093074 0.040308 0.14584
#> 3 0.085338 0.035963 0.13471
#> 4 0.069958 0.026197 0.11372
#> 5 0.120238 0.043513 0.19696
#> 6 0.116878 0.048151 0.18561
#> 7 0.110068 0.043085 0.17705
#> 8 0.087066 0.017958 0.15617</div></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
<h2>Contents</h2>
<ul class="nav nav-pills nav-stacked">
<li><a href="#format">Format</a></li>
<li><a href="#source">Source</a></li>
<li><a href="#examples">Examples</a></li>
</ul>
</div>
</div>
<footer>
<div class="copyright">
<p>Developed by Johannes Ranke.</p>
</div>
<div class="pkgdown">
<p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p>
</div>
</footer>
</div>
</body>
</html>
|