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authorJohannes Ranke <jranke@uni-bremen.de>2020-02-07 07:23:06 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2020-02-07 07:23:06 +0100
commit49ebe44092d2033f548c901ea406619713583103 (patch)
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parent9a1e685a636f7632fc77c7375f9d42735be2decc (diff)
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<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Manual for gmkin • gmkin</title>
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<h1>Manual for gmkin</h1>
<h4 class="author">Johannes Ranke</h4>
- <h4 class="date">2019-07-09</h4>
+ <h4 class="date">2020-02-07</h4>
<div class="hidden name"><code>gmkin_manual.Rmd</code></div>
@@ -95,7 +97,7 @@
<h2 class="hasAnchor">
<a href="#starting-gmkin" class="anchor"></a>Starting gmkin</h2>
<p>As gmkin is an R package, you need to start R and load the gmkin package before you can run gmkin. The latter can be achieved by entering the command</p>
-<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(gmkin)</a></code></pre></div>
+<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" title="1"><span class="kw"><a href="https://rdrr.io/r/base/library.html">library</a></span>(gmkin)</a></code></pre></div>
<p>into the R console. This will also load the packages that gmkin depends on, most notably gWidgetsWWW2 and mkin. Loading the package only has to be done once after you have started R.</p>
<p>Before you start gmkin, you should make sure that R is using the working directory that you would like to keep your gmkin project file(s) in. If you use the standard R GUI application on windows, you can change the working directory from the File menu (‘File’ -&gt; ‘Change dir…’).</p>
<p>Once you are sure that the working directory is what you want it to be, gmkin can be started by entering the R command</p>
@@ -161,7 +163,7 @@
<a href="#importing-data-from-text-files" class="anchor"></a>Importing data from text files</h3>
<p>In case you want to work with a larger dataset that is already available as a computer file e.g. in a spreadsheet application, you can export these data as a tab separated or comma separated text file and import it using the “Browse” and “Upload” buttons in the dataset editor.</p>
<p>As an example, we can create a text file from one of the datasets shipped with the mkin package using the following R command:</p>
-<div class="sourceCode" id="cb3"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb3-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/write.table">write.table</a></span>(schaefer07_complex_case, <span class="dt">sep =</span> <span class="st">","</span>, <span class="dt">dec =</span> <span class="st">"."</span>,</a>
+<div class="sourceCode" id="cb3"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb3-1" title="1"><span class="kw"><a href="https://rdrr.io/r/utils/write.table.html">write.table</a></span>(schaefer07_complex_case, <span class="dt">sep =</span> <span class="st">","</span>, <span class="dt">dec =</span> <span class="st">"."</span>,</a>
<a class="sourceLine" id="cb3-2" title="2"> <span class="dt">row.names =</span> <span class="ot">FALSE</span>, <span class="dt">quote =</span> <span class="ot">FALSE</span>,</a>
<a class="sourceLine" id="cb3-3" title="3"> <span class="dt">file =</span> <span class="st">"schaefer07.csv"</span>)</a></code></pre></div>
<p>This produces a text file with comma separated values in the current working directory of R.</p>
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</div>
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<a href="#tocnav" class="anchor"></a>Contents</h2>
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