Reformat McCall data to have one Rd file per object

2 files changed, 42 insertions, 35 deletions

diff --git a/man/mccall81_245T.Rd b/man/mccall81_245T.Rd
new file mode 100644
index 0000000..6c1a137
--- /dev/null
+++ b/man/mccall81_245T.Rd
@@ -0,0 +1,42 @@
+\name{mccall81_245T}

+\alias{mccall81_245T}

+\docType{data}

+\title{

+  Datasets on aerobic soil metabolism of 2,4,5-T in six soils

+}

+\description{

+ Time course of 2,4,5-trichlorophenoxyacetic acid, and the corresponding

+ 2,4,5-trichlorophenol and 2,4,5-trichloroanisole as recovered in diethylether

+ extracts.

+}

+\usage{mccall81_245T}

+\format{

+  A dataframe containing the following variables.

+  \describe{

+    \item{\code{name}}{the name of the compound observed. Note that T245 is used as 

+                       an acronym for 2,4,5-T. T245 is a legitimate object name

+                       in R, which is necessary for specifying models using

+                       \code{\link{mkinmod}}.} 

+    \item{\code{time}}{a numeric vector containing sampling times in days after

+                       treatment}

+    \item{\code{value}}{a numeric vector containing concentrations in percent of applied radioactivity}

+    \item{\code{soil}}{a factor containing the name of the soil}

+  }

+}

+\source{

+  McCall P, Vrona SA, Kelley SS (1981) Fate of uniformly carbon-14 ring labeled 2,4,5-Trichlorophenoxyacetic acid and 2,4-dichlorophenoxyacetic acid. J Agric Chem 29, 100-107

+  \url{http://dx.doi.org/10.1021/jf00103a026}

+}

+\examples{

+  SFO_SFO_SFO <- mkinmod(T245 = list(type = "SFO", to = "phenol"),

+                         phenol = list(type = "SFO", to = "anisole"),

+                         anisole = list(type = "SFO"))

+  \dontrun{fit.1 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"))

+  summary(fit.1, data = FALSE)}

+  # No covariance matrix and k_phenol_sink is really small, therefore fix it to zero

+  fit.2 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"),

+                 parms.ini = c(k_phenol_sink = 0),

+                 fixed_parms = "k_phenol_sink")

+  summary(fit.2, data = FALSE)

+}

+\keyword{datasets}

diff --git a/man/mccall81_245T_soil_metabolism.Rd b/man/mccall81_245T_soil_metabolism.Rd
deleted file mode 100644
index 2ccc23d..0000000
--- a/man/mccall81_245T_soil_metabolism.Rd
+++ /dev/null
@@ -1,35 +0,0 @@
-\name{mccall81_245T_soil_metabolism}

-\Rdversion{1.1}

-\alias{commerce}

-\alias{catlin}

-\alias{fargo}

-\alias{keith}

-\alias{walla_walla}

-\alias{cecil}

-\docType{data}

-\title{

-  Datasets on aerobic soil metabolism of 2,4,5-T in six soils

-}

-\description{

- Time course of 2,4,5-trichlorophenoxyacetic acid, and the corresponding 2,4,5-trichlorophenol and 

- 2,4,5-trichloroanisole as recovered in diethylether extracts.

-}

-\usage{mccall81_245T_soil_metabolism}

-\format{

-  6 dataframes containing the following variables.

-  \describe{

-    \item{\code{name}}{the name of the compound observed. Note that T245 is used as an acronym for 2,4,5-T. T245 is 

-                       a legitimate object name in R, which is necessary for

-                       specifying models using \code{\link{mkinmod}}.}

-    \item{\code{time}}{a numeric vector containing sampling times in days after treatment}

-    \item{\code{value}}{a numeric vector containing concentrations in percent of applied radioactivity}

-  }

-}

-\source{

-  McCall P, Vrona SA, Kelley SS (1981) Fate of uniformly carbon-14 ring labeled 2,4,5-Trichlorophenoxyacetic acid and 2,4-dichlorophenoxyacetic acid. J Agric Chem 29, 100-107

-  \url{http://dx.doi.org/10.1021/jf00103a026}

-}

-\examples{

-  commerce

-}

-\keyword{datasets}