diff options
Diffstat (limited to 'docs/reference')
| -rw-r--r-- | docs/reference/FOCUS_2006.html | 44 | ||||
| -rw-r--r-- | docs/reference/FOCUS_2006_Z.html | 38 | ||||
| -rw-r--r-- | docs/reference/UBA_model_gallery.html | 33 | ||||
| -rw-r--r-- | docs/reference/gmkin.html | 62 | ||||
| -rw-r--r-- | docs/reference/gmkinws.html | 28 | ||||
| -rw-r--r-- | docs/reference/index.html | 27 |
6 files changed, 186 insertions, 46 deletions
diff --git a/docs/reference/FOCUS_2006.html b/docs/reference/FOCUS_2006.html index 2c9d327..ca9b5ce 100644 --- a/docs/reference/FOCUS_2006.html +++ b/docs/reference/FOCUS_2006.html @@ -18,12 +18,21 @@ <!-- Font Awesome icons --> <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous"> +<!-- clipboard.js --> +<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script> <!-- pkgdown --> <link href="../pkgdown.css" rel="stylesheet"> <script src="../jquery.sticky-kit.min.js"></script> <script src="../pkgdown.js"></script> - + + +<meta property="og:title" content="Example gmkin workspace for Datasets C and D from the FOCUS Kinetics report — FOCUS_2006" /> + +<meta property="og:description" content="An gmkinws object with data taken from FOCUS (2006), Appendix + 3. This is the the workspace that is loaded into gmkin by + default." /> +<meta name="twitter:card" content="summary" /> <!-- mathjax --> <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> @@ -51,10 +60,25 @@ <div id="navbar" class="navbar-collapse collapse"> <ul class="nav navbar-nav"> <li> - <a href="../reference/index.html">Reference</a> + <a href="../index.html"> + <span class="fa fa-home fa-lg"></span> + + </a> </li> <li> - <a href="../articles/index.html">Articles</a> + <a href="../reference/index.html">Reference</a> +</li> +<li class="dropdown"> + <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false"> + Articles + + <span class="caret"></span> + </a> + <ul class="dropdown-menu" role="menu"> + <li> + <a href="../articles/gmkin_manual.html">Manual for gmkin</a> + </li> + </ul> </li> <li> <a href="../news/index.html">News</a> @@ -96,16 +120,16 @@ Degradation Kinetics from Environmental Fate Studies on Pesticides in EU Registration” Report of the FOCUS Work Group on Degradation Kinetics, EC Document Reference Sanco/10058/2005 version 2.0, 434 pp, - <a href = 'http://focus.jrc.ec.europa.eu/dk'>http://focus.jrc.ec.europa.eu/dk</a></p> + <a href='http://focus.jrc.ec.europa.eu/dk'>http://focus.jrc.ec.europa.eu/dk</a></p> <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> - <pre class="examples"><div class='input'> <span class='fu'>not_run</span>({ - <span class='fu'>save</span>(<span class='no'>FOCUS_2006</span>, <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>"FOCUS_2006.RData"</span>) - <span class='co'># Now you can load the file "FOCUS_2006.RData" from gmkin,</span> - <span class='co'># restoring the workspace that is loaded at startup.</span> + <pre class="examples"><div class='input'> </div><span class='co'># NOT RUN {</span> + <span class='fu'>save</span>(<span class='no'>FOCUS_2006</span>, <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>"FOCUS_2006.RData"</span>) + <span class='co'># Now you can load the file "FOCUS_2006.RData" from gmkin,</span> + <span class='co'># restoring the workspace that is loaded at startup.</span> -})</div></pre> +<span class='co'># }</span></pre> </div> <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> <h2>Contents</h2> @@ -127,7 +151,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> + <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p> </div> </footer> diff --git a/docs/reference/FOCUS_2006_Z.html b/docs/reference/FOCUS_2006_Z.html index dff1b0e..4eff2a7 100644 --- a/docs/reference/FOCUS_2006_Z.html +++ b/docs/reference/FOCUS_2006_Z.html @@ -18,12 +18,19 @@ <!-- Font Awesome icons --> <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous"> +<!-- clipboard.js --> +<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script> <!-- pkgdown --> <link href="../pkgdown.css" rel="stylesheet"> <script src="../jquery.sticky-kit.min.js"></script> <script src="../pkgdown.js"></script> + + +<meta property="og:title" content="Example gmkin workspace for Dataset Z from the FOCUS Kinetics report — FOCUS_2006_Z" /> +<meta property="og:description" content="Data taken from FOCUS (2006), Appendix 7, p. 350." /> +<meta name="twitter:card" content="summary" /> <!-- mathjax --> <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> @@ -51,10 +58,25 @@ <div id="navbar" class="navbar-collapse collapse"> <ul class="nav navbar-nav"> <li> - <a href="../reference/index.html">Reference</a> + <a href="../index.html"> + <span class="fa fa-home fa-lg"></span> + + </a> </li> <li> - <a href="../articles/index.html">Articles</a> + <a href="../reference/index.html">Reference</a> +</li> +<li class="dropdown"> + <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false"> + Articles + + <span class="caret"></span> + </a> + <ul class="dropdown-menu" role="menu"> + <li> + <a href="../articles/gmkin_manual.html">Manual for gmkin</a> + </li> + </ul> </li> <li> <a href="../news/index.html">News</a> @@ -94,15 +116,15 @@ Degradation Kinetics from Environmental Fate Studies on Pesticides in EU Registration” Report of the FOCUS Work Group on Degradation Kinetics, EC Document Reference Sanco/10058/2005 version 2.0, 434 pp, - <a href = 'http://focus.jrc.ec.europa.eu/dk'>http://focus.jrc.ec.europa.eu/dk</a></p> + <a href='http://focus.jrc.ec.europa.eu/dk'>http://focus.jrc.ec.europa.eu/dk</a></p> <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> - <pre class="examples"><div class='input'> <span class='fu'>not_run</span>({ - <span class='fu'>save</span>(<span class='no'>FOCUS_2006_Z</span>, <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>"FOCUS_2006_Z.RData"</span>) - <span class='co'># Now you can load the file "FOCUS_2006_Z.RData" from gmkin</span> + <pre class="examples"><div class='input'> </div><span class='co'># NOT RUN {</span> + <span class='fu'>save</span>(<span class='no'>FOCUS_2006_Z</span>, <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>"FOCUS_2006_Z.RData"</span>) + <span class='co'># Now you can load the file "FOCUS_2006_Z.RData" from gmkin</span> -})</div></pre> +<span class='co'># }</span></pre> </div> <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> <h2>Contents</h2> @@ -124,7 +146,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> + <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p> </div> </footer> diff --git a/docs/reference/UBA_model_gallery.html b/docs/reference/UBA_model_gallery.html index 74fc20b..4157743 100644 --- a/docs/reference/UBA_model_gallery.html +++ b/docs/reference/UBA_model_gallery.html @@ -18,12 +18,24 @@ <!-- Font Awesome icons --> <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous"> +<!-- clipboard.js --> +<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script> <!-- pkgdown --> <link href="../pkgdown.css" rel="stylesheet"> <script src="../jquery.sticky-kit.min.js"></script> <script src="../pkgdown.js"></script> + + +<meta property="og:title" content="A collection of some standard kinetic models — UBA_model_gallery" /> +<meta property="og:description" content="The UBA model gallery contains predefined kinetic models for some common use + cases, with metabolites named as in the commonly used PELMO degradation + scheme (Jene 1998). Please use the model gallery of the gmkin + GUI to see their definitions. The models use the topology of the models + defined by Michael Klein (2010) for DegKinManager, with the exception of the + kinetic sorption model." /> +<meta name="twitter:card" content="summary" /> <!-- mathjax --> <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> @@ -51,10 +63,25 @@ <div id="navbar" class="navbar-collapse collapse"> <ul class="nav navbar-nav"> <li> - <a href="../reference/index.html">Reference</a> + <a href="../index.html"> + <span class="fa fa-home fa-lg"></span> + + </a> </li> <li> - <a href="../articles/index.html">Articles</a> + <a href="../reference/index.html">Reference</a> +</li> +<li class="dropdown"> + <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false"> + Articles + + <span class="caret"></span> + </a> + <ul class="dropdown-menu" role="menu"> + <li> + <a href="../articles/gmkin_manual.html">Manual for gmkin</a> + </li> + </ul> </li> <li> <a href="../news/index.html">News</a> @@ -125,7 +152,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> + <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p> </div> </footer> diff --git a/docs/reference/gmkin.html b/docs/reference/gmkin.html index 961372e..75548cb 100644 --- a/docs/reference/gmkin.html +++ b/docs/reference/gmkin.html @@ -18,12 +18,21 @@ <!-- Font Awesome icons --> <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous"> +<!-- clipboard.js --> +<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script> <!-- pkgdown --> <link href="../pkgdown.css" rel="stylesheet"> <script src="../jquery.sticky-kit.min.js"></script> <script src="../pkgdown.js"></script> - + + +<meta property="og:title" content="Start a graphical user interface (GUI) based on the <code>gWidgetsWWW2</code> toolkit. — gmkin" /> + +<meta property="og:description" content="This function starts a browser based GUI. Please visit the + github page of gWidgetsWWW2 + for an explanation how this toolkit works." /> +<meta name="twitter:card" content="summary" /> <!-- mathjax --> <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> @@ -51,10 +60,25 @@ <div id="navbar" class="navbar-collapse collapse"> <ul class="nav navbar-nav"> <li> - <a href="../reference/index.html">Reference</a> + <a href="../index.html"> + <span class="fa fa-home fa-lg"></span> + + </a> </li> <li> - <a href="../articles/index.html">Articles</a> + <a href="../reference/index.html">Reference</a> +</li> +<li class="dropdown"> + <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false"> + Articles + + <span class="caret"></span> + </a> + <ul class="dropdown-menu" role="menu"> + <li> + <a href="../articles/gmkin_manual.html">Manual for gmkin</a> + </li> + </ul> </li> <li> <a href="../news/index.html">News</a> @@ -79,7 +103,7 @@ <p>This function starts a browser based GUI. Please visit the - <a href = 'http://github.com/jverzani/gWidgetsWWW2'>github page of gWidgetsWWW2</a> + <a href='http://github.com/jverzani/gWidgetsWWW2'>github page of gWidgetsWWW2</a> for an explanation how this toolkit works.</p> @@ -107,19 +131,21 @@ <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> - <pre class="examples"><div class='input'> <span class='co'>## Not run: gmkin() # Start the gmkin GUI</span> - <span class='fu'>not_run</span>({ - <span class='no'>g</span> <span class='kw'><-</span> <span class='fu'>gmkin</span>() - - <span class='co'># Only for debugging or other advanced usage:</span> - <span class='no'>session</span> <span class='kw'><-</span> <span class='kw'>gmkin</span><span class='kw'>:::</span><span class='fu'>get_current_session</span>(<span class='no'>g</span>) - <span class='no'>session</span>$<span class='no'>p.df</span> - <span class='no'>session</span>$<span class='no'>ds.df</span> - <span class='no'>session</span>$<span class='no'>ds.cur</span> - <span class='no'>session</span>$<span class='no'>m.cur</span> - <span class='no'>session</span>$<span class='no'>ws</span> - -})</div></pre> + <pre class="examples"><div class='input'> </div><span class='co'># NOT RUN {</span> +<span class='fu'>gmkin</span>() +<span class='co'># }</span><div class='input'> # Start the gmkin GUI + </div><span class='co'># NOT RUN {</span> + <span class='no'>g</span> <span class='kw'><-</span> <span class='fu'>gmkin</span>() + + <span class='co'># Only for debugging or other advanced usage:</span> + <span class='no'>session</span> <span class='kw'><-</span> <span class='kw pkg'>gmkin</span><span class='kw ns'>:::</span><span class='fu'>get_current_session</span>(<span class='no'>g</span>) + <span class='no'>session</span>$<span class='no'>p.df</span> + <span class='no'>session</span>$<span class='no'>ds.df</span> + <span class='no'>session</span>$<span class='no'>ds.cur</span> + <span class='no'>session</span>$<span class='no'>m.cur</span> + <span class='no'>session</span>$<span class='no'>ws</span> + +<span class='co'># }</span></pre> </div> <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> <h2>Contents</h2> @@ -144,7 +170,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> + <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p> </div> </footer> diff --git a/docs/reference/gmkinws.html b/docs/reference/gmkinws.html index 28f6014..2c1f509 100644 --- a/docs/reference/gmkinws.html +++ b/docs/reference/gmkinws.html @@ -18,12 +18,19 @@ <!-- Font Awesome icons --> <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous"> +<!-- clipboard.js --> +<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script> <!-- pkgdown --> <link href="../pkgdown.css" rel="stylesheet"> <script src="../jquery.sticky-kit.min.js"></script> <script src="../pkgdown.js"></script> + + +<meta property="og:title" content="A workspace class for gmkin — gmkinws" /> +<meta property="og:description" content="Datasets, models and fits are stored in lists." /> +<meta name="twitter:card" content="summary" /> <!-- mathjax --> <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> @@ -51,10 +58,25 @@ <div id="navbar" class="navbar-collapse collapse"> <ul class="nav navbar-nav"> <li> - <a href="../reference/index.html">Reference</a> + <a href="../index.html"> + <span class="fa fa-home fa-lg"></span> + + </a> </li> <li> - <a href="../articles/index.html">Articles</a> + <a href="../reference/index.html">Reference</a> +</li> +<li class="dropdown"> + <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false"> + Articles + + <span class="caret"></span> + </a> + <ul class="dropdown-menu" role="menu"> + <li> + <a href="../articles/gmkin_manual.html">Manual for gmkin</a> + </li> + </ul> </li> <li> <a href="../news/index.html">News</a> @@ -118,7 +140,7 @@ by the names used in the models contained in field m</p></dd> </div> <div class="pkgdown"> - <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> + <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p> </div> </footer> diff --git a/docs/reference/index.html b/docs/reference/index.html index 6f21a01..3fd068b 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -18,12 +18,16 @@ <!-- Font Awesome icons --> <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous"> +<!-- clipboard.js --> +<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script> <!-- pkgdown --> <link href="../pkgdown.css" rel="stylesheet"> <script src="../jquery.sticky-kit.min.js"></script> <script src="../pkgdown.js"></script> - + + +<meta property="og:title" content="Function reference" /> <!-- mathjax --> <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> @@ -51,10 +55,25 @@ <div id="navbar" class="navbar-collapse collapse"> <ul class="nav navbar-nav"> <li> - <a href="../reference/index.html">Reference</a> + <a href="../index.html"> + <span class="fa fa-home fa-lg"></span> + + </a> </li> <li> - <a href="../articles/index.html">Articles</a> + <a href="../reference/index.html">Reference</a> +</li> +<li class="dropdown"> + <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false"> + Articles + + <span class="caret"></span> + </a> + <ul class="dropdown-menu" role="menu"> + <li> + <a href="../articles/gmkin_manual.html">Manual for gmkin</a> + </li> + </ul> </li> <li> <a href="../news/index.html">News</a> @@ -145,7 +164,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> + <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p> </div> </footer> |