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+\name{kinfit}
+\Rdversion{1.1}
+\alias{kinfit}
+\title{
+Fit kinetic models to chemical degradation data
+}
+\description{
+ A selection of kinetic models as defined in the FOCUS kinetics report from
+ 2006 are fitted to a given dataframe of chemical degradation data.
+}
+\usage{
+kinfit(kindata, kinmodels = c("SFO"), parent.0.user = NA,
+ start.SFO = list(parent.0 = NA, k = NA),
+ start.FOMC = list(parent.0 = NA, alpha = NA, beta = NA),
+ start.DFOP = list(parent.0 = NA, k1 = NA, k2 = NA, g = NA),
+ start.HS = list(parent.0 = NA, k1 = NA, k2 = NA, tb = NA),
+ algorithm = "port")
+}
+\arguments{
+ \item{kindata}{
+ A data frame containing a time variable named \code{t} and concentration
+ data for the parent compound named \code{parent}.
+ }
+ \item{kinmodels}{
+ An array of character strings which are names of the models to be fit.
+ Possible names are \code{\link{SFO}}, \code{\link{FOMC}}, \code{\link{DFOP}}
+ and \code{\link{HS}}.
+ }
+ \item{parent.0.user}{
+ The user can give a starting estimate for parent.0 here, overriding other
+ potential sources for starting values as specified below.
+ }
+ \item{start.SFO}{
+ A list of starting parameters for fitting the \code{\link{SFO}} model,
+ containing \code{parent.0} and \code{k}.
+ }
+ \item{start.FOMC}{
+ A list of starting parameters for fitting the \code{\link{FOMC}} model,
+ containing \code{parent.0}, \code{alpha} and \code{beta}.
+ }
+ \item{start.DFOP}{
+ A list of starting parameters for fitting the \code{\link{DFOP}} model,
+ containing \code{parent.0}, \code{k1}, \code{k2} and \code{g}.
+ }
+ \item{start.HS}{
+ A list of starting parameters for fitting the \code{\link{HS}} model,
+ containing \code{parent.0}, \code{k1}, \code{k2} and \code{tb}.
+ }
+ \item{algorithm}{
+ The algorithm to use for the calls to \code{\link{nls}}.
+ }
+}
+\details{
+ Per default all starting parameters are \code{NA} and the function tries to
+ find suitable starting parameters on its own.
+}
+\value{
+ A list of models of class \code{nls} representing the models that were
+ fitted successfully.
+}
+\references{
+ FOCUS (2006) \dQuote{Guidance Document on Estimating Persistence and
+ Degradation Kinetics from Environmental Fate Studies on Pesticides in EU
+ Registration} Report of the FOCUS Work Group on Degradation Kinetics,
+ EC Document Reference Sanco/10058/2005 version 2.0, 434 pp,
+ \url{http://focus.jrc.ec.europa.eu/dk}
+}
+\author{ Johannes Ranke }
+\examples{
+data(FOCUS_2006_A)
+(kinfits <- kinfit(FOCUS_2006_A))
+data(FOCUS_2006_B)
+(kinfits <- kinfit(FOCUS_2006_B, kinmodels=c("SFO","FOMC")))
+}
+\keyword{ models }
+\keyword{ regression }
+\keyword{ nonlinear }

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