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2015-07-03More tweaks to kinfit DESCRIPTION to avoid CRAN notesHEADmasterjranke4-4/+3
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@270 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2015-07-02Generate static docs with new DESCRIPTIONjranke2-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@269 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2015-07-02Adapt DESCRIPTION to current CRAN policyjranke1-9/+11
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@268 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2015-07-02Vignettes rebuilt by staticdocs, remove empty directoryjranke2-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@266 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2015-07-02Improve package descriptionjranke1-5/+5
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@265 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2015-07-02Adapt to R CMD check --as-cran on R-devel, improve Makefilejranke3-18/+19
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@264 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2014-12-18Use Authors@R in DESCRIPTION and update staticdocs using my master branchjranke4-5/+4
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@237 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2014-11-25Add makefile for building package and static docsjranke5-0/+85
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@234 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2014-11-24Remove leftover vignette file, decrease offending precision in test, releasejranke4-916/+106
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@232 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2014-10-29Correct name of the DFOP model according to FOCUS kineticsjranke2-2/+2
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@225 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-27Improve formatting in three help files to avoid a NOTE in the package check.jranke4-4/+9
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@166 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-22- Removed the font.main argument from the call to plot(...) in kinresplot as ↵jranke2-4/+4
it produced awkward results git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@123 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-04-14- Update the TODO list, setting some requirements for version 1.0jranke2-0/+0
- Check that initial values specified using parms.ini are actually needed for the model, stop otherwise - List all formation fractions in the same place in the summary, also if they were fitted in the model - Include an FOMC model coupled to two metabolites in the unit tests - Some updates needed because of the above - Update of static documentation including the vignettes - Update of the mkin vignettes in the vignettes directory git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@82 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-03-05Update of vignettes and static HTML documentationjranke2-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@75 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-22Make the use of globalVariables() conditional on the R versionjranke1-1/+2
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@71 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-18- Completion of the multicompartment part of the mkin examples vignettejranke2-0/+0
- Fix to chi2 error level calculation by correctly returning backtransformed parameters as bparms.optim and bparms.fixed - Adaptations of unit tests, summary and plot functions git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@67 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-17- Removed vignette files that are built during generationjranke15-1389/+0
- Updated the staticdoc documentation git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@63 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-17- Added the examples vignette to the kinfit packagejranke18-6/+1639
- Added calls to utils::globalVariables to make R CMD check pass cleanly without NOTES git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@62 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-09-20Some updates of the mkin vignettejranke1-0/+0
Added the kinfit vignette file to the repository git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@57 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-08-23Fix small inconsistency in the documentationjranke2-2/+2
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@56 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-08-23Fixes and improvements of kinobject and kinobjects functionsjranke5-11/+8
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@55 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-06-30Changed the maintainer e-mail address to my University of Bremen address as ↵jranke1-3/+3
this is the address I am using for submitting to CRAN git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@48 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-06-28Update DESCRIPTION files to bump versionsjranke1-2/+2
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@47 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-06-28Delete the PDF versions of the vignette to have them rebuilt on r-forge/CRANjranke1-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@46 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-06-26- Moved the vignette to the location that is meanwhile recommendedjranke56-24/+16
- Update of the vignette - A bit of cleanup git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@42 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-06-25- Document endpoints() functionjranke7-95/+95
- Fix unit tests that were broken by introduction of the endpoints function - Small documentation fixes - Format output of backtransformed parameters - Integrate snippet for making static documentation using staticdocs by Hadley Wickham git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@41 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-03-15Update kinfit and mkin to the latest version published on BerliOS.jranke46-276/+2164
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@17 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2010-05-20Various improvements, the most prominent being the addition of the jranke2-2/+4
test dataset from the original KinGUI Piacenza paper. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@10 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2010-05-11Pending update of the DESCRIPTION file that should have been uploaded three ↵jranke1-2/+2
weeks ago. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@7 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2010-04-12Removed the note about a formerly planned R journal article from the vignette.jranke9-138/+137
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@3 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2010-03-30Initial import of the kinfit package developed from 2008-07 to 2010-03 atjranke87-0/+4878
Harlan Laboratories Ltd (former RCC Ltd). Supports fitting of parent data with the usual FOCUS kinetic models. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/kinfit@2 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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