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mkinfit does not take mkinds datasets as argument, but works with dataframes
such as the on contained in the data field of mkinds objects. Some datasets
provided by this package come as mkinds objects nevertheless."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>A dataset class for mkin</h1>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/mkinds.R" class="external-link"><code>R/mkinds.R</code></a></small>
<div class="hidden name"><code>mkinds.Rd</code></div>
</div>
<div class="ref-description">
<p>At the moment this dataset class is hardly used in mkin. For example,
mkinfit does not take mkinds datasets as argument, but works with dataframes
such as the on contained in the data field of mkinds objects. Some datasets
provided by this package come as mkinds objects nevertheless.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for mkinds</span></span>
<span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, data <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>x</dt>
<dd><p>An mkinds object.</p></dd>
<dt>data</dt>
<dd><p>Should the data be printed?</p></dd>
<dt>...</dt>
<dd><p>Not used.</p></dd>
</dl></div>
<div id="public-fields">
<h2>Public fields</h2>
<p></p><div class="r6-fields"><dl><dt><code>title</code></dt>
<dd><p>A full title for the dataset</p></dd>
<dt><code>sampling_times</code></dt>
<dd><p>The sampling times</p></dd>
<dt><code>time_unit</code></dt>
<dd><p>The time unit</p></dd>
<dt><code>observed</code></dt>
<dd><p>Names of the observed variables</p></dd>
<dt><code>unit</code></dt>
<dd><p>The unit of the observations</p></dd>
<dt><code>replicates</code></dt>
<dd><p>The maximum number of replicates per sampling time</p></dd>
<dt><code>data</code></dt>
<dd><p>A data frame with at least the columns name, time
and value in order to be compatible with mkinfit</p></dd>
</dl><p></p></div>
</div>
<div id="methods">
<h2>Methods</h2>
<div class="section">
<h3 id="public-methods">Public methods<a class="anchor" aria-label="anchor" href="#public-methods"></a></h3>
<ul><li><p><a href="#method-mkinds-new"><code>mkinds$new()</code></a></p></li>
<li><p><a href="#method-mkinds-clone"><code>mkinds$clone()</code></a></p></li>
</ul></div><p></p><hr><a id="method-mkinds-new"></a><div class="section">
<h3 id="method-new-">Method <code>new()</code><a class="anchor" aria-label="anchor" href="#method-new-"></a></h3>
<p>Create a new mkinds object</p><div class="section">
<h4 id="usage">Usage<a class="anchor" aria-label="anchor" href="#usage"></a></h4>
<p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va"><a href="../reference/mkinds.html">mkinds</a></span><span class="op">$</span><span class="fu">new</span><span class="op">(</span>title <span class="op">=</span> <span class="st">""</span>, <span class="va">data</span>, time_unit <span class="op">=</span> <span class="cn">NA</span>, unit <span class="op">=</span> <span class="cn">NA</span><span class="op">)</span></span></code></pre></div><p></p></div>
</div>
<div class="section">
<h4 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h4>
<p></p><div class="arguments"><dl><dt><code>title</code></dt>
<dd><p>The dataset title</p></dd>
<dt><code>data</code></dt>
<dd><p>The data</p></dd>
<dt><code>time_unit</code></dt>
<dd><p>The time unit</p></dd>
<dt><code>unit</code></dt>
<dd><p>The unit of the observations</p></dd>
</dl><p></p></div>
</div>
</div><p></p><hr><a id="method-mkinds-clone"></a><div class="section">
<h3 id="method-clone-">Method <code>clone()</code><a class="anchor" aria-label="anchor" href="#method-clone-"></a></h3>
<p>The objects of this class are cloneable with this method.</p><div class="section">
<h4 id="usage-1">Usage<a class="anchor" aria-label="anchor" href="#usage-1"></a></h4>
<p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va">mkinds</span><span class="op">$</span><span class="fu">clone</span><span class="op">(</span>deep <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div><p></p></div>
</div>
<div class="section">
<h4 id="arguments-1">Arguments<a class="anchor" aria-label="anchor" href="#arguments-1"></a></h4>
<p></p><div class="arguments"><dl><dt><code>deep</code></dt>
<dd><p>Whether to make a deep clone.</p></dd>
</dl><p></p></div>
</div>
</div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
<span class="r-in"><span><span class="va">mds</span> <span class="op"><-</span> <span class="va">mkinds</span><span class="op">$</span><span class="fu">new</span><span class="op">(</span><span class="st">"FOCUS A"</span>, <span class="va">FOCUS_2006_A</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mds</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#></span> <mkinds> with $title: FOCUS A </span>
<span class="r-out co"><span class="r-pr">#></span> Observed compounds $observed: parent </span>
<span class="r-out co"><span class="r-pr">#></span> Sampling times $sampling_times:</span>
<span class="r-out co"><span class="r-pr">#></span> 0, 3, 7, 14, 30, 62, 90, 118 </span>
<span class="r-out co"><span class="r-pr">#></span> With a maximum of 1 replicates</span>
<span class="r-in"><span></span></span>
</code></pre></div>
</div>
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