Don't run water sediment example to reduce time needed

Static documentation except articles rebuilt by pkgdown

4 files changed, 19 insertions, 12 deletions

diff --git a/build.log b/build.log
index a02e93ae..67f4433b 100644
--- a/build.log
+++ b/build.log
@@ -2,4 +2,9 @@
 * preparing ‘mkin’:
 * checking DESCRIPTION meta-information ... OK
 * installing the package to build vignettes
-* creating vignettes ...
\ No newline at end of file
+* creating vignettes ... OK
+* checking for LF line-endings in source and make files and shell scripts
+* checking for empty or unneeded directories
+* looking to see if a ‘data/datalist’ file should be added
+* building ‘mkin_0.9.47.1.tar.gz’
+
diff --git a/check.log b/check.log
index 5d8f5a1a..be621e26 100644
--- a/check.log
+++ b/check.log
@@ -1,18 +1,14 @@
 * using log directory ‘/home/jranke/git/mkin/mkin.Rcheck’
-* using R version 3.4.1 (2017-06-30)
+* using R version 3.4.3 (2017-11-30)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
 * using options ‘--no-tests --as-cran’
 * checking for file ‘mkin/DESCRIPTION’ ... OK
 * checking extension type ... Package
-* this is package ‘mkin’ version ‘0.9.46’
+* this is package ‘mkin’ version ‘0.9.47.1’
 * package encoding: UTF-8
-* checking CRAN incoming feasibility ... WARNING
+* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
 Maintainer: ‘Johannes Ranke <jranke@uni-bremen.de>’
-
-Insufficient package version (submitted: 0.9.46, existing: 0.9.46)
-
-The Date field is over a month old.
 * checking package namespace information ... OK
 * checking package dependencies ... OK
 * checking if this is a source package ... OK
@@ -56,10 +52,12 @@ The Date field is over a month old.
 * checking contents of ‘data’ directory ... OK
 * checking data for non-ASCII characters ... OK
 * checking data for ASCII and uncompressed saves ... OK
-* checking sizes of PDF files under ‘inst/doc’ ... OK
 * checking installed files from ‘inst/doc’ ... OK
 * checking files in ‘vignettes’ ... OK
-* checking examples ... OK
+* checking examples ... NOTE
+Examples with CPU or elapsed time > 5s
+                         user system elapsed
+test_data_from_UBA_2014 5.736  1.888   5.427
 * checking for unstated dependencies in ‘tests’ ... OK
 * checking tests ... SKIPPED
 * checking for unstated dependencies in vignettes ... OK
@@ -68,7 +66,7 @@ The Date field is over a month old.
 * checking PDF version of manual ... OK
 * DONE
 
-Status: 1 WARNING
+Status: 1 NOTE
 See
   ‘/home/jranke/git/mkin/mkin.Rcheck/00check.log’
 for details.
diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html
index e43e2cf9..e30babc4 100644
--- a/docs/reference/test_data_from_UBA_2014.html
+++ b/docs/reference/test_data_from_UBA_2014.html
@@ -123,7 +123,8 @@
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'>  <span class='co'># This is a level P-II evaluation of the dataset according to the FOCUS kinetics</span>
+    <pre class="examples"><div class='input'>
+  <span class='co'># This is a level P-II evaluation of the dataset according to the FOCUS kinetics</span>
   <span class='co'># guidance. Due to the strong correlation of the parameter estimates, the</span>
   <span class='co'># covariance matrix is not returned. Note that level P-II evaluations are</span>
   <span class='co'># generally considered deprecated due to the frequent occurrence of such</span>
@@ -248,6 +249,7 @@
 #&gt; All data 0.09246946       5  6
 #&gt; parent_w 0.06377096       3  3
 #&gt; parent_s 0.20882324       2  3</div><div class='input'>
+
   <span class='co'># This is the evaluation used for the validation of software packages</span>
   <span class='co'># in the expertise from 2014</span>
   <span class='no'>m_soil</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='fu'>c</span>(<span class='st'>"M1"</span>, <span class='st'>"M2"</span>)),
diff --git a/man/test_data_from_UBA_2014.Rd b/man/test_data_from_UBA_2014.Rd
index a3543559..6cdc73a7 100644
--- a/man/test_data_from_UBA_2014.Rd
+++ b/man/test_data_from_UBA_2014.Rd
@@ -22,6 +22,7 @@
   zu ModelMaker 4.0, Umweltbundesamt Projektnummer 27452
 }
 \examples{
+  \dontrun{
   # This is a level P-II evaluation of the dataset according to the FOCUS kinetics
   # guidance. Due to the strong correlation of the parameter estimates, the
   # covariance matrix is not returned. Note that level P-II evaluations are
@@ -35,6 +36,7 @@
 
   summary(f_river)$bpar
   mkinerrmin(f_river)
+  }
 
   # This is the evaluation used for the validation of software packages
   # in the expertise from 2014