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| author | Johannes Ranke <jranke@uni-bremen.de> | 2023-08-17 08:53:15 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2023-08-17 08:53:15 +0200 |
| commit | 448e47e756c0c67fc658f93575092973aa455fb1 (patch) | |
| tree | 8a9c976fe406773ddefd26fb77f2fe60b0e7caca | |
| parent | 263613da9ac7f169dbaea875c897ff698aa10720 (diff) | |
Point to the dmta pathway vignette in the dmta test
| -rw-r--r-- | tests/testthat/test_dmta.R | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/tests/testthat/test_dmta.R b/tests/testthat/test_dmta.R index cd6de341..3941cae1 100644 --- a/tests/testthat/test_dmta.R +++ b/tests/testthat/test_dmta.R @@ -85,9 +85,12 @@ test_that("Different backends get consistent results for SFO-SFO3+, dimethenamid "Iteration 5, LME step.*not converge") ints_nlme_mets <- intervals(nlme_sfo_sfo3p_tc, which = "fixed") - skip("Fitting this ODE model with saemix takes about 15 minutes on my system") + skip("Fitting this ODE model with saemix takes about 5 minutes on my new system") + # August 2023: Please refer to the mkin vignette for the currently + # recommended way to fit the DMTA pathway data with saemix + # As DFOP is overparameterised and leads to instabilities and errors, we - # need to use SFO. + # need to use SFO with nlme # saem_saemix_sfo_sfo3p_tc <- saem(dmta_sfo_sfo3p_tc) # The fit above, using SFO for the parent leads to low values of DMTA_0 # (confidence interval from 84.4 to 92.8) which is not consistent with what |