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authorJohannes Ranke <jranke@uni-bremen.de>2022-12-07 16:19:54 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-12-07 16:19:54 +0100
commit904ba9668eb76eaae4960e2188134e8c88da07ee (patch)
tree31498997575ebcc7544d81a71f991bf127be3a41
parent97f71fc3d086bd447ab3e4d19abf32bb3114085b (diff)
Fix parplot for the case of failed multistart runs
-rw-r--r--NEWS.md2
-rw-r--r--R/parms.R2
-rw-r--r--R/parplot.R2
3 files changed, 4 insertions, 2 deletions
diff --git a/NEWS.md b/NEWS.md
index 1931142c..4540b517 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -8,6 +8,8 @@
- 'R/illparms.R': Also check if confidence intervals for slope parameters in covariate models include zero. Only implemented for fits obtained with the saemix backend.
+- 'R/parplot.R': Make the function work also in the case that some of the multistart runs failed.
+
# mkin 1.2.1 (2022-11-19)
- '{data,R}/ds_mixed.rda': Include the test data in the package instead of generating it in 'tests/testthat/setup_script.R'. Refactor the generating code to make it consistent and update tests.
diff --git a/R/parms.R b/R/parms.R
index bd4e479b..bb04a570 100644
--- a/R/parms.R
+++ b/R/parms.R
@@ -77,6 +77,6 @@ parms.multistart <- function(object, exclude_failed = TRUE, ...) {
successful <- which(!is.na(res[, 1]))
first_success <- successful[1]
colnames(res) <- names(parms(object[[first_success]]))
- if (exclude_failed) res <- res[successful, ]
+ if (exclude_failed[1]) res <- res[successful, ]
return(res)
}
diff --git a/R/parplot.R b/R/parplot.R
index 63306ac2..e9c18947 100644
--- a/R/parplot.R
+++ b/R/parplot.R
@@ -41,7 +41,7 @@ parplot.multistart.saem.mmkin <- function(object, llmin = -Inf, llquant = NA,
orig <- attr(object, "orig")
orig_parms <- parms(orig)
start_degparms <- orig$mean_dp_start
- all_parms <- parms(object)
+ all_parms <- parms(object, exclude_failed = FALSE)
if (inherits(object, "multistart.saem.mmkin")) {
llfunc <- function(object) {

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