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| author | Johannes Ranke <jranke@uni-bremen.de> | 2018-09-21 17:52:01 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2018-09-21 17:52:01 +0200 |
| commit | f50e716f52c88a9b4767031d1eb62817fba7dce5 (patch) | |
| tree | 78edcfc623911eb01ce70d5fd070e02dd5060417 | |
| parent | b12e80a875d87f790d67a4e5a50d829060316a18 (diff) | |
Skip long running test on travis to avoid timeout
| -rw-r--r-- | tests/testthat/test_irls.R | 17 |
1 files changed, 12 insertions, 5 deletions
diff --git a/tests/testthat/test_irls.R b/tests/testthat/test_irls.R index 5e09912f..72ab5111 100644 --- a/tests/testthat/test_irls.R +++ b/tests/testthat/test_irls.R @@ -107,11 +107,18 @@ test_that("Reweighting method 'tc' works", { sdfunc = function(x) sigma_twocomp(x, 0.5, 0.07), n = 15, reps = 1000, digits = 5, LOD = -Inf) - time_met_2_15_tc_15 <- system.time( - f_met_2_15_tc_e4 <- mmkin(list(m_synth_DFOP_lin), d_met_2_15, quiet = TRUE, - reweight.method = "tc", reweight.tol = 1e-4, - cores = if (Sys.getenv("TRAVIS") != "") 1 else 15) - ) + # For a single fit, we get a relative error of less than 30% in the error + # model components + f_met_2_tc_e4 <- mkinfit(m_synth_DFOP_lin, d_met_2_15[[1]], quiet = TRUE, + reweight.method = "tc", reweight.tol = 1e-4) + parm_errors_met_2_tc_e4 <- (f_met_2_tc_e4$tc_fitted - c(0.5, 0.07)) / c(0.5, 0.07) + expect_true(all(abs(parm_errors_met_2_tc_e4) < 0.3)) + + # Doing more takes a lot of computing power + skip_on_travis() + f_met_2_15_tc_e4 <- mmkin(list(m_synth_DFOP_lin), d_met_2_15, quiet = TRUE, + reweight.method = "tc", reweight.tol = 1e-4, + cores = 14) parms_met_2_15_tc_e4 <- apply(sapply(f_met_2_15_tc_e4, function(x) x$bparms.optim), 1, mean) parm_errors_met_2_15_tc_e4 <- (parms_met_2_15_tc_e4[names(parms_DFOP_lin_optim)] - |