Fix another URL, add devcheck targetv0.9.50.3

11 files changed, 85 insertions, 11 deletions

diff --git a/.Rbuildignore b/.Rbuildignore
index dc1506da..f9ff58a0 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -1,6 +1,7 @@
 ^GNUmakefile$
 ^build.log$
 ^check.log$
+^check_dev.log$
 ^test.log$
 ^test_dev.log$
 ^tests_slow.log$
diff --git a/DESCRIPTION b/DESCRIPTION
index 9e0d63d7..3dec4d1d 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -26,7 +26,7 @@ LazyData: yes
 Encoding: UTF-8
 Language: en-GB
 VignetteBuilder: knitr
-BugReports: http://github.com/jranke/mkin/issues/
+BugReports: https://github.com/jranke/mkin/issues/
 URL: https://pkgdown.jrwb.de/mkin/
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.1.1
diff --git a/GNUmakefile b/GNUmakefile
index fea87d6b..09933ee7 100644
--- a/GNUmakefile
+++ b/GNUmakefile
@@ -62,6 +62,9 @@ quickinstall: build-no-vignettes
 check: roxygen build
 	_R_CHECK_CRAN_INCOMING_REMOTE_=false "$(RBIN)/R" CMD check --as-cran --no-tests $(TGZ) 2>&1 | tee check.log
 
+devcheck: roxygen build
+	_R_CHECK_CRAN_INCOMING_REMOTE_=false "$(RDEVBIN)/R" CMD check --as-cran --no-tests $(TGZ) 2>&1 | tee check_dev.log
+
 quickcheck: roxygen build-no-vignettes
 	mv $(TGZVNR) $(TGZ)
 	"$(RBIN)/R" CMD check --no-tests --no-build-vignettes --no-vignettes $(TGZ)
diff --git a/check_dev.log b/check_dev.log
new file mode 100644
index 00000000..1d671445
--- /dev/null
+++ b/check_dev.log
@@ -0,0 +1,70 @@
+* using log directory ‘/home/jranke/git/mkin/mkin.Rcheck’
+* using R Under development (unstable) (2020-10-07 r79311)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-tests --as-cran’
+* checking for file ‘mkin/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘mkin’ version ‘0.9.50.3’
+* package encoding: UTF-8
+* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
+Maintainer: ‘Johannes Ranke <jranke@uni-bremen.de>’
+* checking package namespace information ... OK
+* checking package dependencies ... OK
+* checking if this is a source package ... OK
+* checking if there is a namespace ... OK
+* checking for executable files ... OK
+* checking for hidden files and directories ... OK
+* checking for portable file names ... OK
+* checking for sufficient/correct file permissions ... OK
+* checking serialization versions ... OK
+* checking whether package ‘mkin’ can be installed ... OK
+* checking installed package size ... OK
+* checking package directory ... OK
+* checking for future file timestamps ... OK
+* checking ‘build’ directory ... OK
+* checking DESCRIPTION meta-information ... OK
+* checking top-level files ... OK
+* checking for left-over files ... OK
+* checking index information ... OK
+* checking package subdirectories ... OK
+* checking R files for non-ASCII characters ... OK
+* checking R files for syntax errors ... OK
+* checking whether the package can be loaded ... OK
+* checking whether the package can be loaded with stated dependencies ... OK
+* checking whether the package can be unloaded cleanly ... OK
+* checking whether the namespace can be loaded with stated dependencies ... OK
+* checking whether the namespace can be unloaded cleanly ... OK
+* checking use of S3 registration ... OK
+* checking dependencies in R code ... OK
+* checking S3 generic/method consistency ... OK
+* checking replacement functions ... OK
+* checking foreign function calls ... OK
+* checking R code for possible problems ... OK
+* checking Rd files ... OK
+* checking Rd metadata ... OK
+* checking Rd line widths ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of ‘data’ directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... SKIPPED
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking re-building of vignette outputs ... OK
+* checking PDF version of manual ... OK
+* checking for non-standard things in the check directory ... OK
+* checking for detritus in the temp directory ... OK
+* DONE
+
+Status: OK
+
diff --git a/docs/dev/404.html b/docs/dev/404.html
index 1434d6b8..9d14af1e 100644
--- a/docs/dev/404.html
+++ b/docs/dev/404.html
@@ -119,7 +119,7 @@
       </ul>
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="http://github.com/jranke/mkin/">
+  <a href="https://github.com/jranke/mkin/">
     <span class="fab fa fab fa-github fa-lg"></span>
      
   </a>
diff --git a/docs/dev/articles/index.html b/docs/dev/articles/index.html
index 472e9396..b8ba57d8 100644
--- a/docs/dev/articles/index.html
+++ b/docs/dev/articles/index.html
@@ -119,7 +119,7 @@
       </ul>
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="http://github.com/jranke/mkin/">
+  <a href="https://github.com/jranke/mkin/">
     <span class="fab fa fab fa-github fa-lg"></span>
      
   </a>
diff --git a/docs/dev/authors.html b/docs/dev/authors.html
index 6473cdce..6ec78126 100644
--- a/docs/dev/authors.html
+++ b/docs/dev/authors.html
@@ -119,7 +119,7 @@
       </ul>
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="http://github.com/jranke/mkin/">
+  <a href="https://github.com/jranke/mkin/">
     <span class="fab fa fab fa-github fa-lg"></span>
      
   </a>
diff --git a/docs/dev/index.html b/docs/dev/index.html
index 12df433a..76113d7c 100644
--- a/docs/dev/index.html
+++ b/docs/dev/index.html
@@ -86,7 +86,7 @@
       </ul>
 <ul class="nav navbar-nav navbar-right">
 <li>
-  <a href="http://github.com/jranke/mkin/">
+  <a href="https://github.com/jranke/mkin/">
     <span class="fab fa fab fa-github fa-lg"></span>
      
   </a>
@@ -201,9 +201,9 @@ Ranke J, Wöltjen J, Meinecke S (2018) Comparison of software tools for kinetic
 <ul class="list-unstyled">
 <li>Download from CRAN at <br><a href="https://cloud.r-project.org/package=mkin">https://​cloud.r-project.org/​package=mkin</a>
 </li>
-<li>Browse source code at <br><a href="http://github.com/jranke/mkin/">http://​github.com/​jranke/​mkin/​</a>
+<li>Browse source code at <br><a href="https://github.com/jranke/mkin/">https://​github.com/​jranke/​mkin/​</a>
 </li>
-<li>Report a bug at <br><a href="http://github.com/jranke/mkin/issues/">http://​github.com/​jranke/​mkin/​issues/​</a>
+<li>Report a bug at <br><a href="https://github.com/jranke/mkin/issues/">https://​github.com/​jranke/​mkin/​issues/​</a>
 </li>
 </ul>
 </div>
diff --git a/docs/dev/news/index.html b/docs/dev/news/index.html
index dad1622d..5851c638 100644
--- a/docs/dev/news/index.html
+++ b/docs/dev/news/index.html
@@ -119,7 +119,7 @@
       </ul>
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="http://github.com/jranke/mkin/">
+  <a href="https://github.com/jranke/mkin/">
     <span class="fab fa fab fa-github fa-lg"></span>
      
   </a>
@@ -138,7 +138,7 @@
   <div class="col-md-9 contents">
     <div class="page-header">
       <h1 data-toc-skip>Changelog <small></small></h1>
-      <small>Source: <a href='http://github.com/jranke/mkin/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
+      <small>Source: <a href='https://github.com/jranke/mkin/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
     </div>
 
     <div id="mkin-0-9-50-3" class="section level1">
diff --git a/docs/dev/pkgdown.yml b/docs/dev/pkgdown.yml
index d80606cc..116561ef 100644
--- a/docs/dev/pkgdown.yml
+++ b/docs/dev/pkgdown.yml
@@ -10,7 +10,7 @@ articles:
   NAFTA_examples: web_only/NAFTA_examples.html
   benchmarks: web_only/benchmarks.html
   compiled_models: web_only/compiled_models.html
-last_built: 2020-10-08T07:26Z
+last_built: 2020-10-08T07:50Z
 urls:
   reference: https://pkgdown.jrwb.de/mkin/reference
   article: https://pkgdown.jrwb.de/mkin/articles
diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html
index b72d0c85..a5cd6663 100644
--- a/docs/dev/reference/index.html
+++ b/docs/dev/reference/index.html
@@ -119,7 +119,7 @@
       </ul>
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="http://github.com/jranke/mkin/">
+  <a href="https://github.com/jranke/mkin/">
     <span class="fab fa fab fa-github fa-lg"></span>
      
   </a>