Add DTx function, check and testHEADmain

The tolerance of one test had to be increased in test_deSolve.R,
and four vdiffr snapshots with negligible differences were updated.

Tests run with a maximum of 16 cores when running in the Agroscope
Apptainer environment.

1 files changed, 55 insertions, 44 deletions

diff --git a/NAMESPACE b/NAMESPACE
index 5b9a1c85..445a3649 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -83,6 +83,7 @@ S3method(update,saem.mmkin)
 S3method(which.best,default)
 export(CAKE_export)
 export(DFOP.solution)
+export(DTx)
 export(FOMC.solution)
 export(HS.solution)
 export(IORE.solution)
@@ -155,49 +156,59 @@ import(nlme)
 importFrom(R6,R6Class)
 importFrom(grDevices,dev.cur)
 importFrom(lmtest,lrtest)
-importFrom(methods,is)
-importFrom(methods,signature)
-importFrom(nlme,intervals)
-importFrom(nlme,nlme)
-importFrom(parallel,detectCores)
-importFrom(parallel,mclapply)
-importFrom(parallel,parLapply)
+importFrom(methods,
+  is,
+  signature
+)
+importFrom(nlme,
+  intervals,
+  nlme
+)
+importFrom(parallel,
+  detectCores,
+  mclapply,
+  parLapply
+)
 importFrom(rlang,"!!!")
 importFrom(saemix,saemix)
-importFrom(stats,AIC)
-importFrom(stats,BIC)
-importFrom(stats,aggregate)
-importFrom(stats,anova)
-importFrom(stats,as.formula)
-importFrom(stats,coef)
-importFrom(stats,coefficients)
-importFrom(stats,cov2cor)
-importFrom(stats,dist)
-importFrom(stats,dnorm)
-importFrom(stats,lm)
-importFrom(stats,logLik)
-importFrom(stats,median)
-importFrom(stats,na.fail)
-importFrom(stats,nlminb)
-importFrom(stats,nobs)
-importFrom(stats,optimize)
-importFrom(stats,pchisq)
-importFrom(stats,plogis)
-importFrom(stats,predict)
-importFrom(stats,pt)
-importFrom(stats,qchisq)
-importFrom(stats,qf)
-importFrom(stats,qlogis)
-importFrom(stats,qnorm)
-importFrom(stats,qt)
-importFrom(stats,quantile)
-importFrom(stats,residuals)
-importFrom(stats,rnorm)
-importFrom(stats,shapiro.test)
-importFrom(stats,terms)
-importFrom(stats,update)
-importFrom(stats,vcov)
-importFrom(utils,capture.output)
-importFrom(utils,getFromNamespace)
-importFrom(utils,packageVersion)
-importFrom(utils,write.table)
+importFrom(stats,
+  AIC,
+  BIC,
+  aggregate,
+  anova,
+  as.formula,
+  coef,
+  coefficients,
+  cov2cor,
+  dist,
+  dnorm,
+  lm,
+  logLik,
+  median,
+  na.fail,
+  nlminb,
+  nobs,
+  optimize,
+  pchisq,
+  plogis,
+  predict,
+  pt,
+  qchisq,
+  qf,
+  qlogis,
+  qnorm,
+  qt,
+  quantile,
+  residuals,
+  rnorm,
+  shapiro.test,
+  terms,
+  update,
+  vcov
+)
+importFrom(utils,
+  capture.output,
+  getFromNamespace,
+  packageVersion,
+  write.table
+)