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authorJohannes Ranke <jranke@uni-bremen.de>2022-12-19 12:31:56 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-12-19 12:38:07 +0100
commit886c9ef013124aa954d960c655b349b5340ff154 (patch)
treecc25364040ce87893d21581380de48c7e9bee422 /NEWS.md
parent0023df3c31fac29b5f9337ecd732a5dfd4d51a2d (diff)
Rename template folder, create format
Instead of rmarkdown::pdf_document, mkin::hierarchical_kinetics is used as a document format in the template. In this way, the template file can be freed from some R code and yaml options that the average user does not have to be aware of.
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# mkin 1.2.2
+- 'inst/rmarkdown/templates/hier': R markdown template to facilitate the application of hierarchical kinetic models.
+
+- 'inst/testdata/lambda-cyhalothrin_soil_efsa_2014.xlsx': Example spreadsheet for use with 'read_spreadsheet()'.
+
- 'R/mhmkin.R': Allow an 'illparms.mhmkin' object or a list with suitable dimensions as value of the argument 'no_random_effects', making it possible to exclude random effects that were ill-defined in simpler variants of the set of degradation models. Remove the possibility to exclude random effects based on separate fits, as it did not work well.
- 'R/summary.saem.mmkin.R': List all initial parameter values in the summary, including random effects and error model parameters. Avoid redundant warnings that occurred in the calculation of correlations of the fixed effects in the case that the Fisher information matrix could not be inverted. List correlations of random effects if specified by the user in the covariance model.

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