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authorJohannes Ranke <jranke@uni-bremen.de>2020-04-03 17:40:55 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-04-03 17:40:55 +0200
commit8c19fc5261dc53dc7880b3f54f8f2adf413de996 (patch)
tree193aad4a3b2920ad6bff1d54cd18e992ac179bdd /R/mkinds.R
parent312255078d2529f485a81df2a53d5928622ae81f (diff)
parent47ba9ea512b82fb8b31da8ec5558f3c0952d86d4 (diff)
Merge branch 'master' into mxkin
Merge DESCRIPTION manually to combine dependencies and rerun check to update check.log
Diffstat (limited to 'R/mkinds.R')
-rw-r--r--R/mkinds.R53
1 files changed, 29 insertions, 24 deletions
diff --git a/R/mkinds.R b/R/mkinds.R
index a66adb14..d6f296bf 100644
--- a/R/mkinds.R
+++ b/R/mkinds.R
@@ -1,43 +1,50 @@
#' A dataset class for mkin
#'
-#' A dataset class for mkin
-#'
-#' @name mkinds
-#' @docType class
-#' @format An \code{\link{R6Class}} generator object.
-#' @section Fields:
-#'
-#' \describe{ \item{list("title")}{A full title for the dataset}
-#'
-#' \item{list("sampling")}{times The sampling times}
-#'
-#' \item{list("time_unit")}{The time unit}
-#'
-#' \item{list("observed")}{Names of the observed compounds}
-#'
-#' \item{list("unit")}{The unit of the observations}
-#'
-#' \item{list("replicates")}{The number of replicates}
-#'
-#' \item{list("data")}{A dataframe with at least the columns name, time and
-#' value in order to be compatible with mkinfit} }
+#' @description
+#' At the moment this dataset class is hardly used in mkin. For example,
+#' mkinfit does not take mkinds datasets as argument, but works with dataframes
+#' such as the on contained in the data field of mkinds objects. Some datasets
+#' provided by this package come as mkinds objects nevertheless.
+#'
#' @importFrom R6 R6Class
-#' @keywords datasets
+#' @seealso The S3 printing method \code{\link{print.mkinds}}
#' @examples
#'
#' mds <- mkinds$new("FOCUS A", FOCUS_2006_A)
+#' print(mds)
#'
#' @export
mkinds <- R6Class("mkinds",
public = list(
+
+ #' @field title A full title for the dataset
title = NULL,
+
+ #' @field sampling_times The sampling times
sampling_times = NULL,
+
+ #' @field time_unit The time unit
time_unit = NULL,
+
+ #' @field observed Names of the observed variables
observed = NULL,
+
+ #' @field unit The unit of the observations
unit = NULL,
+
+ #' @field replicates The maximum number of replicates per sampling time
replicates = NULL,
+
+ #' @field data A data frame with at least the columns name, time
+ #' and value in order to be compatible with mkinfit
data = NULL,
+ #' @description
+ #' Create a new mkinds object
+ #' @param title The dataset title
+ #' @param data The data
+ #' @param time_unit The time unit
+ #' @param unit The unit of the observations
initialize = function(title = "", data, time_unit = NA, unit = NA) {
self$title <- title
@@ -56,8 +63,6 @@ mkinds <- R6Class("mkinds",
#' Print mkinds objects
#'
-#' Print mkinds objects.
-#'
#' @param x An \code{\link{mkinds}} object.
#' @param \dots Not used.
#' @export

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